BAC Information

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BAC

Clone NameB6Ng01-282I01
Chromosome6 (Build37)2 (Build37)
Map Location 46,552,051 - 46,553,21090,913,131 - 90,913,540
singlet/doubletsingletsinglet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282I01.bB6Ng01-282I01.g
ACCGA081704GA081705
length1,162933
definitionB6Ng01-282I01.b B6Ng01-282I01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,552,051 - 46,553,210)(90,913,131 - 90,913,540)
sequence
gaattcaattgtcagcattacaaaaccaagcaataaccacaggacattgt
tatagatttgaaatgtgatggtacctcaaggagcatatcacagtcctgtc
atagtgttaagcatccagaacatcatcatagttataatagtgatcactgc
ttatattcttgctagaatatgcagccagaaacaatataattatagaaaat
ccctgggaagtctaatataaaataaaataaaaatgacactggtcactatt
atttttaaaaattaaaaatattaaattaatctaataaacagaattattca
agtattaaatatcaaacactcaattgaattgaccataaattgttgatata
gatatacgacttaaactttcatacctaataatataatctcactttatata
tgaacagtttgtaattctaacatgtggagctcttctaccgactcgattgt
tgaggatgcccaaggaaatacaggtacaattcctaccctgagaacactta
ctgtctgtattacaataagagagcaaaaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga
agaagaagacgactctatggcttacacaacatgggaaatttcagtattat
tctaaagactattatgttcagtacgtgttttatgttggtttctgatgagg
ccaagcttcctgcttacaggcagtcacatccttgctgtgttctttgcgtt
acctttcctctgtgtacatgataaaagagttttctgagtctctttctcat
cttataaggacactaactttgttagatcatgaccccaactttataataca
tttaatttaattatattcttgagtgttcagcatccatatgcagtcacatt
aggggttggacttcagtgtataactttagacaaggagatacaattccacc
catagcactagacaaagagcaagaaatttaatgatcagctacagtttatt
ttggtgatagtgggcctagctcaaatctttgggtagtataatgattaatt
tttactagcatcctgactagttttgatccacattagcagaccacacttct
gaatgttatgttgaagaaacatttcagaaaggtataacaggaagggaagt
cctgggtgggca

gaattctgggacttgcaagtttgaatacagcacaagaggatagaaggcat
cagtatatctatatgtatctacagcagctaagtgtggctatcatagcatc
ctgggactgcctgggatttctgaggatacccaaatctgaggatgcctaag
tccttggctataatggtacaagtctaacaggcaagggaaaaggaggcgtc
agtgactgtatgtgtatttgacatgtggttgtttactggaggcgtggttt
tattcttagagtgaagggttattctttgtggttgcttatcagaacacatt
ttttctttcattttgctgtattgtttttctgattctccatttacattgcc
tgacctttatcatttccttttgcttattaaacttaggctttgtttttttc
ccatatctaatttcttgaagtttaatgctggtttatgatttgaatttatt
tatttatttatttatttatttatttatttatttatggtttttcgagacag
ggtttctctgtatagccctggctgtcctggaactcactctgtagaccagg
ctggcctcgaactcagaaatctgcctgcctctgccttcagggcgctgggc
tgtttttcgtcatgcctgacactgcctggatggccaggaaccaaagaaag
aaaaccgagagactcaggatagaactaagtacaactgggaaaaaaaagtc
aatgaaacaatttctgctatatccatagttcagtgcttagctcaattgtc
atcagagggttgtcatccaacaactgatgggtgcagacacagagacctac
agtcaaacatgaggtgaagccaggggaagccagtagagtagagggaggaa
gtatttactgtagaagccaaaaaatagaggacactgtgaggatgccagtc
acaggaatcaactaagcaaggctcataggaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46552051_46553210
seq2: B6Ng01-282I01.b_50_1211

seq1  GAATTCAATTGTCAGCATTACAAAACCAAGCAATAACCACAGGACATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGTCAGCATTACAAAACCAAGCAATAACCACAGGACATTGT  50

seq1  TATAGATTTGAAATGTGATGGTACCTCAAGGAGCATATCACAGTCCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTTGAAATGTGATGGTACCTCAAGGAGCATATCACAGTCCTGTC  100

seq1  ATAGTGTTAAGCATCCAGAACATCATCATAGTTATAATAGTGATCACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTAAGCATCCAGAACATCATCATAGTTATAATAGTGATCACTGC  150

seq1  TTATATTCTTGCTAGAATATGCAGCCAGAAACAATATAATTATAGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCTTGCTAGAATATGCAGCCAGAAACAATATAATTATAGAAAAT  200

seq1  CCCTGGGAAGTCTAATATAAAATAAAATAAAAATGACACTGGTCACTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAAGTCTAATATAAAATAAAATAAAAATGACACTGGTCACTATT  250

seq1  ATTTTTAAAAATTAAAAATATTAAATTAATCTAATAAACAGAATTATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAAATTAAAAATATTAAATTAATCTAATAAACAGAATTATTCA  300

seq1  AGTATTAAATATCAAACACTCAATTGAATTGACCATAAATTGTTGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAAATATCAAACACTCAATTGAATTGACCATAAATTGTTGATATA  350

seq1  GATATACGACTTAAACTTTCATACCTAATAATATAATCTCACTTTATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACGACTTAAACTTTCATACCTAATAATATAATCTCACTTTATATA  400

seq1  TGAACAGTTTGTAATTCTAACATGTGGAGCTCTTCTACCGACTCGATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTTTGTAATTCTAACATGTGGAGCTCTTCTACCGACTCGATTGT  450

seq1  TGAGGATGCCCAAGGAAATACAGGTACAATTCCTACCCTGAGAACACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGCCCAAGGAAATACAGGTACAATTCCTACCCTGAGAACACTTA  500

seq1  CTGTCTGTATTACAATAAGAGAGCAAAAAGAAGAAGAAGAAGAAGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTATTACAATAAGAGAGCAAAAAGAAGAAGAAGAAGAAGAAGAA  550

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  600

seq1  AGAAGAAGACGACTCTATGGCTTACACAACATGGGAAATTTCAGTATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGACGACTCTATGGCTTACACAACATGGGAAATTTCAGTATTAT  650

seq1  TCTAAAGACTATTATGTTCAGTACGTGTTTTATGTTGGTTTCTGATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGACTATTATGTTCAGTACGTGTTTTATGTTGGTTTCTGATGAGG  700

seq1  CCAAGCTTCCTGCTTACAGGCAGTCACATCCTTGCTGTGTTCTTTGCGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTCCTGCTTACAGGCAGTCACATCCTTGCTGTGTTCTTTGCGTT  750

seq1  ACCTTTCCTCTGTGTACATGATAAAAGAGTTTTCTGAGTCTCTTTCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCTCTGTGTACATGATAAAAGAGTTTTCTGAGTCTCTTTCTCAT  800

seq1  CTTATAAGGACACTAACTTTGTTAGATCATGACCCCAACTTTATAATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAGGACACTAACTTTGTTAGATCATGACCCCAACTTTATAATACA  850

seq1  TTTAATTTAATTATATTCTTGAGTGTTCAGCATCCATATGCAGTCACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAATTATATTCTTGAGTGTTCAGCATCCATATGCAGTCACATT  900

seq1  AGGGGTTGGACTTCAGTGTATAACTTTAGACAAGGGAGATACAATTCCAC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGGGTTGGACTTCAGTGTATAACTTTAGACAA-GGAGATACAATTCCAC  949

seq1  CCATAGCACTAGACAAAGAGCAAGAAATTTAATGATCAGCTACAGTTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCACTAGACAAAGAGCAAGAAATTTAATGATCAGCTACAGTTTAT  999

seq1  TTTGGTGATAGTGGGCCTAGCTCAAATCTTTGGGTAAGTATAATGATTAA  1050
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTGGTGATAGTGGGCCTAGCTCAAATCTTTGGGT-AGTATAATGATTAA  1048

seq1  TTTTTACTAGCATCCTGACTAGGTTTTGAATCACA-TAGCAGA-CACACT  1098
      ||||||||||||||||||||| |||||||  |||| ||||||| ||||||
seq2  TTTTTACTAGCATCCTGACTA-GTTTTGATCCACATTAGCAGACCACACT  1097

seq1  TCTGAGTG-TATG-TGA--GAACATTTC-CAGAGGTATAACAAGTGAGGG  1143
      ||||| || |||| |||   ||||||||  | ||||||||| ||  ||||
seq2  TCTGAATGTTATGTTGAAGAAACATTTCAGAAAGGTATAAC-AGGAAGGG  1146

seq1  AAGTCCTGGTGTGGGCA  1160
      ||||||||| |||||||
seq2  AAGTCCTGG-GTGGGCA  1162


seq1: chr2_90913131_90913540
seq2: B6Ng01-282I01.g_516_864 (reverse)

seq1  TAGGTCTCTGTGTCTG------TGTGTAGT--GAGGA-ATGAATAAAATG  41
      ||||||||||||||||      |  || ||  || || |    |   |||
seq2  TAGGTCTCTGTGTCTGCACCCATCAGTTGTTGGATGACAACCCTCTGATG  50

seq1  ACAGAAGAGTGCCAGGTTGGTGCCACACACCTTTAGTCCCAGCACTCGGG  91
      ||  ||  | || | |       |||  | || | |    ||||     |
seq2  AC--AATTGAGCTAAG-------CACTGAACTATGGATATAGCA-----G  86

seq1  AGTCAGGTGCAGGCAGCTAGCCCTCTGTGAGTTCCAGGCCAGCCTGGTCT  141
      |    | | ||      | | | | | |   |||        || | | |
seq2  AAATTGTTTCA------TTGACTTTTTT---TTC--------CCAGTTGT  119

seq1  ACAT-GATGGTTCCAGAG-CAGTCAGGGCTACATAATGAGACCTTGATTC  189
      || | | |   ||| ||| |  || ||  | | |       | ||| |||
seq2  ACTTAGTTCTATCCTGAGTCTCTC-GGTTTTCTT------TCTTTGGTTC  162

seq1  AAAAAAATAAAAATAAAAAAATAAATAAAATAAAAATAAAAGCTGGGCGT  239
                                    |    ||  | || | |   
seq2  -----------------------------CTGGCCATCCAGGCAGTGTCA  183

seq1  GG--TGGCGCACGTCTTTAATCCCAGCACTCAGAAGGCAGAGGCAGGCGG  287
      ||  || || |   |    | |||||| | | |||||||||||||||| |
seq2  GGCATGACGAAAAAC----AGCCCAGCGCCCTGAAGGCAGAGGCAGGCAG  229

seq1  ATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGGCAGC  337
      ||||||||||| ||||||||||||||||||| ||||||||||||| ||||
seq2  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  279

seq1  CAGGGCTATACAGAGAAACCCTGTCTCGAAAAAACCAATTAAATAAATAA  387
      |||||||||||||||||||||||||||| ||||||||  |||||||||||
seq2  CAGGGCTATACAGAGAAACCCTGTCTCG-AAAAACCA--TAAATAAATAA  326

seq1  ATAAATAAATAAATAAATAAATA  410
      |||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATAAATA  349


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