BAC Information

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BAC

Clone NameB6Ng01-282I17
Chromosome6 (Build37)
Map Location 38,086,020 - 38,087,043
singlet/doubletsinglet
Overlap geneD630045J12Rik
Upstream geneDgki, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik
Downstream geneLOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282I17.bB6Ng01-282I17.g
ACCGA081732GA081733
length1,2061,057
definitionB6Ng01-282I17.b B6Ng01-282I17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggtcaatggcatagactagatcttcaacaagatcataaaaga
gtcccaaaatcaaggaatgacatacccataacagataccaaaaaaagcac
actaaacctcaaactacccactgtatattatgatttaaacatgagatgta
tagagaacaaagagagagtactgaaagctgcaagaggaaaatcccatgtt
taggaaaatccataaggaggagctgactccctaatgaaaactttcagaac
cagaagaacctggagttatctactttaactcctaagaccatgggtgccaa
cctacactactggacacagcaaaatatctgctgtagtttaagaagaaaga
aaaatggtctgtggcacaaacaggctaaaagaattcgtgtcctaaccagc
cctacgtggaatgatggccacagtactgcagactgaaaataggaataagc
ccacttgagagatatagacagaaaacaagtgaggctataattactgaaac
aactggaccgagaacagaaggaggaaaaaatataataaaatggcagcaat
caacatatactttacaataatgtctttaaaaattaataccctcaacttac
caattaaaaaaaaaaaaaacaaagtagccaagtggcttaagaaagccatc
tctctgttatctacaagaaatcaccaccttgccctcaatgataggcacta
ccttaaaaagaaaggttggaagaaagtattctaagcatctgtgaacagaa
agcaagcagatatcaacaatatcctaatattcatcaagatagacttcaaa
ttaaaattagtcagagagataaagaaaggctatatccttccaatcaaagg
aacaattatccaagaatatattacaatcctaagtatttgtgcaacaaact
ctgacacacccgattttatgaaaagcatattgaacctaaagacacagata
aattccaactcagtaatagtggttgatttctataaatcttcttctcatag
gtcagctagtcaaaagagaatacatgtatcaaaataatattgtaatacat
caggaggactacataatatacagaatatcctactcgatacattctaatca
gcaggtccagaagtaattcatggaaaagcagatccaattctgaaaactaa
aaactctacatttcgaactatttggaatatatcccagtgcatctccataa
tattga
gaattccagaatggggtaaggggttttgatgtgtgctctgctctcccagc
agacctagctttggcccagggttgctgccgtcttcagagttggttccccc
tgaacccccacagccacagtcatcaactgatgctccatatgctgcccgag
ggatctactcagaggagatgccatcagtggcccggcctcggcctgttggg
ggcaccacaggtgggtatggtgattgagcttgcatttctggatgctagga
cacttgctttaggagtcaggaagatgcgtcagcaggtgaaggcacttgct
gccaagccagtatagctggctcactagcttctggccagttcccttgtctt
taccttccatctcaccttaagcgtactgggttccagatgtgtgctgctcc
atcgggctcaggtggtcaggccttcatgtcaagggcctttacccactggg
tcatctccattgccctacaacttacaagattagttcctctgatcaggcca
ccagaggtgtaatagtggaacagtgtgagaccctttagggtttcagtagg
ggacactgctctttggtggacaagctgtggccaccacggatgtgcttaca
ttcactatggcatctattggtgtcactccagcggttacccaaagcttcag
acttcacctccccagatcactgacgcctttcatgggctgtaaactcatga
agagctcatgctctgagctctgttttgtaaatgctgtcctgtgtttctag
agcatctgtgctgcctgagatcattgggcctttgccaggctcaccctgtt
tcctgtgtattttacaaaagtcactgttggagtaccccaccttcaatgtc
ttcctggtccctcctctatgactcccagagccttcctttctacagaatat
atacttctttggatggtccatcaagaaagtagtttattgtgaattctaat
tttcagtgattggctaatatccttagtccaaatttctggttgctatgagc
cagaacacccatgaactatggcaactccttataaaaggaaacatttgaga
tttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38086020_38087043
seq2: B6Ng01-282I17.g_66_1110 (reverse)

seq1  AATGTTTCCTTTTATAA-GAGTTGCCAT-GGTCAT-GGTG-TCT-GCTCA  45
      ||||||||||||||||| |||||||||| | |||| |||| ||| |||||
seq2  AATGTTTCCTTTTATAAGGAGTTGCCATAGTTCATGGGTGTTCTGGCTCA  50

seq1  TAGCAA-CAG-AATTTTGACTAA-GATATTTAGCAATCACTGAAAATTTA  92
      |||||| ||| ||||| |||||| ||||||   ||||||||||||| |||
seq2  TAGCAACCAGAAATTTGGACTAAGGATATTAGCCAATCACTGAAAA-TTA  99

seq1  GAATTCAC-ATAAACTACTTTCTTGATG--ACAT-CAAAGAAGTATATAT  138
      |||||||| |||||||||||||||||||   ||| |||||||||||||||
seq2  GAATTCACAATAAACTACTTTCTTGATGGACCATCCAAAGAAGTATATAT  149

seq1  TCTGTAGAAAG--AAGCTCTGGGAGTCATAGAGGAGGGA-CAGGAAGACA  185
      |||||||||||  | |||||||||||||||||||||||| ||||||||||
seq2  TCTGTAGAAAGGAAGGCTCTGGGAGTCATAGAGGAGGGACCAGGAAGACA  199

seq1  TTGAAGGTGGGGTAC-CCAACAGTGAC-TTTGTAAAATACACAGGAAACA  233
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TTGAAGGTGGGGTACTCCAACAGTGACTTTTGTAAAATACACAGGAAACA  249

seq1  GGGTGAGCCTGGCAAAGGCCC-ATGATCTCAGGCAGCACAGATGCTCTAG  282
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGTGAGCCTGGCAAAGGCCCAATGATCTCAGGCAGCACAGATGCTCTAG  299

seq1  AAACACAGGACAGCATTTAC-AAACAGAGCTCAGAGCATGAGCTCTTCAT  331
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAACACAGGACAGCATTTACAAAACAGAGCTCAGAGCATGAGCTCTTCAT  349

seq1  GAG-TTACAG-CCATGAAAGGCGTCAGTGATCTGGGGAGGTGAAGTCTGA  379
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACAGCCCATGAAAGGCGTCAGTGATCTGGGGAGGTGAAGTCTGA  399

seq1  AGC-TTGGGTAACCGCTGGAGTGACACCAATAGATGCCATAGTGAATGTA  428
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGGTAACCGCTGGAGTGACACCAATAGATGCCATAGTGAATGTA  449

seq1  AGCACATCCGTGGTGGCCACAGCTTGTCCACCAAAGAGCAGTGTCCCCTA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCCGTGGTGGCCACAGCTTGTCCACCAAAGAGCAGTGTCCCCTA  499

seq1  CTGAAACCCTAAAGGGTCTCACACTGTTCCACTATTACACCTCTGGTGGC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCCTAAAGGGTCTCACACTGTTCCACTATTACACCTCTGGTGGC  549

seq1  CTGATCAGAGGAACTAATCTTGTAAGTTGTAGGGCAATGGAGATGACCCA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAGAGGAACTAATCTTGTAAGTTGTAGGGCAATGGAGATGACCCA  599

seq1  GTGGGTAAAGGCCCTTGACATGAAGGCCTGACCACCTGAGCCCGATGGAG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAAAGGCCCTTGACATGAAGGCCTGACCACCTGAGCCCGATGGAG  649

seq1  CAGCACACATCTGGAACCCAGTACGCTTAAGGTGAGATGGAAGGTAAAGA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACATCTGGAACCCAGTACGCTTAAGGTGAGATGGAAGGTAAAGA  699

seq1  CAAGGGAACTGGCCAGAAGCTAGTGAGCCAGCTATACTGGCTTGGCAGCA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAACTGGCCAGAAGCTAGTGAGCCAGCTATACTGGCTTGGCAGCA  749

seq1  AGTGCCTTCACCTGCTGACGCATCTTCCTGACTCCTAAAGCAAGTGTCCT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTCACCTGCTGACGCATCTTCCTGACTCCTAAAGCAAGTGTCCT  799

seq1  AGCATCCAGAAATGCAAGCTCAATCACCATACCCACCTGTGGTGCCCCCA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCAGAAATGCAAGCTCAATCACCATACCCACCTGTGGTGCCCCCA  849

seq1  ACAGGCCGAGGCCGGGCCACTGATGGCATCTCCTCTGAGTAGATCCCTCG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCGAGGCCGGGCCACTGATGGCATCTCCTCTGAGTAGATCCCTCG  899

seq1  GGCAGCATATGGAGCATCAGTTGATGACTGTGGCTGTGGGGGTTCAGGGG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATATGGAGCATCAGTTGATGACTGTGGCTGTGGGGGTTCAGGGG  949

seq1  GAACCAACTCTGAAGACGGCAGCAACCCTGGGCCAAAGCTAGGTCTGCTG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACTCTGAAGACGGCAGCAACCCTGGGCCAAAGCTAGGTCTGCTG  999

seq1  GGAGAGCAGAGCACACATCAAAACCCCTTACCCCATTCTGGAATTC  1024
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCAGAGCACACATCAAAACCCCTTACCCCATTCTGGAATTC  1045