BAC Information

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BAC

Clone NameB6Ng01-283K18
Chromosome6 (Build37)
Map Location 33,789,898 - 33,977,844
singlet/doubletdoublet
Overlap geneExoc4
Upstream geneChchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283K18.bB6Ng01-283K18.g
ACCGA082573GA082574
length6111,049
definitionB6Ng01-283K18.b B6Ng01-283K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,789,898 - 33,790,510)(33,976,809 - 33,977,844)
sequence
gaattctttaccttttagtgcatagtgagttccatgcttgtctaaccgga
tgacccagagtcaaaaaggaaaaagagagaggaggaaaaaggggaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagagagagaaaggagagggagaggagag
gagaggagagaagagaagagaagagaagagaagagaagagaagagaagag
aagagaagagaagagaagagaagagaagagaagagaagagaaaaaggaag
gaaggccaaaaataagaataaatagtttttaagaaaatggccattgtctt
cactttcaacttaagatcaaacaataggctcatctctgacagaatgtaga
ttgaaactctagctaatgtggtgcttagaatgagaatgtgccccaggtac
tcaagtatttgaatatgtggtccccagttggtggccttgtttgggggagg
tttagaaggaacgtgctactgggagcatgctttgaatctcacatccctgc
cttctttcccttccctgttttttatggtatcctactgcccttccttctgt
attctccctct
gaattctccccaatctctgcttggacaataaaaggctagagcccaagact
gggaaggagagagaggaaggcagaacttgaaatggagtagggggtcttag
gtagggactacaaggagaaggaaaaaggtaaaggaagaaggaggactcca
tgaggcaggatggcccatgatcatgtggccaagagaagctcaccctgagg
ccacacatgaaacaaaacaagactcagttggcaagcagtgggtatattca
tctggttattaatagcctcattgggttgtcatagtgtcagaacctgccca
gtttaggtttgtagcttgttaatgaattctgatgtctttgtgttgtttac
tcaggagctaaatgggaaggagtgtggcagaaacaataaatgacatcagt
aattattcaagtcaatcagagttaaagatggcaaccatattcagaatcca
caagataaggaattgtgacatagacttgctaagttagagactgttcgaag
taactttgaggtcccaaagacagagcccaccactccatctgaagcgtctc
aacaaagcaaaatgttactctttttcaggaggatgatttagagagaatga
aggcacagagacaggaagtccacttgatggtggcaactgtcttttttcca
ctggctggagtctgacttcaggctctcaagattggatagttttttaaaat
caaagctagagaaatgaaaggtgaaaggaagtcaatgactttaatctgag
aatgtagcaggggcttactgggttggtgctattaaaacgtttatgtaaaa
gtcttactgggttggagagataaaagatctgaatttccttgtcctaaaca
caggttttatagttgtaaaggagctggtagagaaggctgattatttaata
ttcctttcagagaccaaacaggctaatttactacaacatattaaggacct
aaccgattgggctttattgatactgatgtgtatttggccctttttttatc
tcatacctacccttaactttccacttggatgggtcgggtcactgaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33789898_33790510
seq2: B6Ng01-283K18.b_45_655

seq1  GAATTCTTTACCTTTTAGTGCATAGTGAGTTCCATGCTTGTCTAACCGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCTTTTAGTGCATAGTGAGTTCCATGCTTGTCTAACCGGA  50

seq1  TGACCCAGAGTCAAAAAGGAAAAAGAGAGAGGAGGAAAAAGGGGAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGAGTCAAAAAGGAAAAAGAGAGAGGAGGAAAAAGGGGAAAGAA  100

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  150

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAAAGGAGAGGGAGAGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAAAGGAGAGGGAGAGGAGAG  200

seq1  GAGAGGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG  250

seq1  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAAAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAAAGGAAG  300

seq1  GAAGGCCAAAAATAAGAATAAATAGTTTTTAAGAAAATGGCCATTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCAAAAATAAGAATAAATAGTTTTTAAGAAAATGGCCATTGTCTT  350

seq1  CACTTTCAACTTAAGATCAAACAATAGGCTCATCTCTGACAGAATGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAACTTAAGATCAAACAATAGGCTCATCTCTGACAGAATGTAGA  400

seq1  TTGAAACTCTAGCTAATGTGGTGCTTAGAATGAGAATGTGCCCCAGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCTAGCTAATGTGGTGCTTAGAATGAGAATGTGCCCCAGGTAC  450

seq1  TCAAGTATTTGAATATGTGGTCCCCAGTTGGTGGCCTTGTTTGGGGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATTTGAATATGTGGTCCCCAGTTGGTGGCCTTGTTTGGGGGAGG  500

seq1  TTTAGAAGGAAGGTGCAGCTGGGAGCAGGCTTTAAGAGCTCACAGCCCTG  550
      ||||||||||| ||||  ||||||||| ||||| | | |||||| |||||
seq2  TTTAGAAGGAACGTGCTACTGGGAGCATGCTTTGA-ATCTCACATCCCTG  549

seq1  CCCCACTTTCACTTCCCTGCTTCATATGGTATCCTACTGCCCTTCCCTCT  600
       ||  ||||| |||||||| ||  |||||||||||||||||||||| |||
seq2  -CCTTCTTTCCCTTCCCTGTTTTTTATGGTATCCTACTGCCCTTCCTTCT  598

seq1  AGATTCTCCCTCT  613
        |||||||||||
seq2  GTATTCTCCCTCT  611

seq1: chr6_33976809_33977844
seq2: B6Ng01-283K18.g_65_1113 (reverse)

seq1  AGCTTCAGTGGACCGACCCAT-CAAGT-GAAAG-TAAAGGTAGGTATGGA  47
      ||||||||||  ||||||||| ||||| ||||| ||| ||||||||| ||
seq2  AGCTTCAGTGACCCGACCCATCCAAGTGGAAAGTTAAGGGTAGGTAT-GA  49

seq1  GATAAAAA---GGCCAAATACACATCAGTATC-ATAA--GCCAATC-GTT  90
      ||||||||   ||||||||||||||||||||| ||||   |||||| |||
seq2  GATAAAAAAAGGGCCAAATACACATCAGTATCAATAAAGCCCAATCGGTT  99

seq1  AGGT-CTTAATATGTTGTAGTAAATTAGCCTGTTTTGTCTCTGAAAGGAA  139
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGTCCTTAATATGTTGTAGTAAATTAGCCTGTTTGGTCTCTGAAAGGAA  149

seq1  TATTAAAT-ATCAGCCTTCTCTACCAGCTCCTTTACAACTATAAAACCTG  188
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATAATCAGCCTTCTCTACCAGCTCCTTTACAACTATAAAACCTG  199

seq1  TGTTTAGGACAAGG-AATTCAGATCTTTTATCTCTCCAACCCAGTAAGAC  237
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGACAAGGAAATTCAGATCTTTTATCTCTCCAACCCAGTAAGAC  249

seq1  TTTTACATAAACGTTTTAATAGCACCAACCCAGTAAGCCCCTGCTACATT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATAAACGTTTTAATAGCACCAACCCAGTAAGCCCCTGCTACATT  299

seq1  CTCAGATTAAAGTCATTGACTTCCTTTCACC-TTCATTTCTCTAGCTTTG  336
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCAGATTAAAGTCATTGACTTCCTTTCACCTTTCATTTCTCTAGCTTTG  349

seq1  ATTTTAAAAAACTATCCAATCTTGAGAGCCTGAAGTCAGACTCCAGCCAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAAACTATCCAATCTTGAGAGCCTGAAGTCAGACTCCAGCCAG  399

seq1  TGGAAAAAAGACAGTTGCCACCATCAAGTGGACTTCCTGTCTCTGTGCCT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAGACAGTTGCCACCATCAAGTGGACTTCCTGTCTCTGTGCCT  449

seq1  TCATTCTCTCTAAATCATCCTCCTGAAAAAGAGTAACATTTTGCTTTGTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCTCTAAATCATCCTCCTGAAAAAGAGTAACATTTTGCTTTGTT  499

seq1  GAGACGCTTCAGATGGAGTGGTGGGCTCTGTCTTTGGGACCTCAAAGTTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGCTTCAGATGGAGTGGTGGGCTCTGTCTTTGGGACCTCAAAGTTA  549

seq1  CTTCGAACAGTCTCTAACTTAGCAAGTCTATGTCACAATTCCTTATCTTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAACAGTCTCTAACTTAGCAAGTCTATGTCACAATTCCTTATCTTG  599

seq1  TGGATTCTGAATATGGTTGCCATCTTTAACTCTGATTGACTTGAATAATT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGAATATGGTTGCCATCTTTAACTCTGATTGACTTGAATAATT  649

seq1  ACTGATGTCATTTATTGTTTCTGCCACACTCCTTCCCATTTAGCTCCTGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTCATTTATTGTTTCTGCCACACTCCTTCCCATTTAGCTCCTGA  699

seq1  GTAAACAACACAAAGACATCAGAATTCATTAACAAGCTACAAACCTAAAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAACACAAAGACATCAGAATTCATTAACAAGCTACAAACCTAAAC  749

seq1  TGGGCAGGTTCTGACACTATGACAACCCAATGAGGCTATTAATAACCAGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGTTCTGACACTATGACAACCCAATGAGGCTATTAATAACCAGA  799

seq1  TGAATATACCCACTGCTTGCCAACTGAGTCTTGTTTTGTTTCATGTGTGG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATACCCACTGCTTGCCAACTGAGTCTTGTTTTGTTTCATGTGTGG  849

seq1  CCTCAGGGTGAGCTTCTCTTGGCCACATGATCATGGGCCATCCTGCCTCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGTGAGCTTCTCTTGGCCACATGATCATGGGCCATCCTGCCTCA  899

seq1  TGGAGTCCTCCTTCTTCCTTTACCTTTTTCCTTCTCCTTGTAGTCCCTAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCTCCTTCTTCCTTTACCTTTTTCCTTCTCCTTGTAGTCCCTAC  949

seq1  CTAAGACCCCCTACTCCATTTCAAGTTCTGCCTTCCTCTCTCTCCTTCCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACCCCCTACTCCATTTCAAGTTCTGCCTTCCTCTCTCTCCTTCCC  999

seq1  AGTCTTGGGCTCTAGCCTTTTATTGTCCAAGCAGAGATTGGGGAGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGGCTCTAGCCTTTTATTGTCCAAGCAGAGATTGGGGAGAATTC  1049