BAC Information

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BAC

Clone NameB6Ng01-283L16
Chromosome6 (Build37)
Map Location 19,858,150 - 20,026,757
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283L16.bB6Ng01-283L16.g
ACCGA082615GA082616
length1,0711,100
definitionB6Ng01-283L16.b B6Ng01-283L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,025,678 - 20,026,757)(19,858,150 - 19,859,262)
sequence
gaattctttatcaagcttccctgcttaaaattatggtaaaagataccatt
acaagatcatcgtttattctcatttccaaatcacatccaaagaacccaca
ctgaacattgtttagtttctaactatgaggaacagcataattgagtatta
gacgggtattttttgaaagctcctagtgagatataaagtgaatttgaatt
gcttgaagtgcaggcacagttagatccatttaaactctgtcttacatctt
catgtcaaggtcatcctggtcaaaaatgaagggatgaaattacattagaa
atttgagtcaattttttcatatttacaagtttagcatatgtgcttctttc
gattagtatgaaacttgaaggtcttaaaaaaaaaaaagaaccatgcattt
agtatgcaaccaaagttcataggaagtaaggagaaaatccagaggattat
ggtgttttcattgctagttttgtgtgaacagtacctcacagtcaggttta
cagtcactgagttttctaacagcttttaatttacttcttttccactttgg
tagtctcagaagtaatataaagcatatttttcctaccatgaagagattag
agtatctttaagctcagttgaactcacctttaaagagacttgttctttat
gatgcagggagtgcacatgtgcatgtccacatacaaacattccaagtgaa
gattttcatttgttccaaagttatgtttccaccaaccttttactcatatt
tatctgttttacttctattcttactgaagttacataaaaggaaagcttgt
gccacctatgtcacaaatatactgtattctaaatgtacataacctggaaa
aaataatgctaaccaagagatttcaaaaaagtaatcaaattgagaaaaca
ctgtaactgggactaacagaataggtaacttaatggtatactagtgagtt
tatttaaggcaataaaagactgttttgggatagagagatgatgggtcagt
agatgcgaaaacatatgctctggtaaagaaatatagaaaaggatatttgc
aggtgtggtgcacacgcttta

gaattcagtttggcagaactgagaatggtgggaaactgtgaaagaaggaa
caggaaaagtgctttacttgatagttctagatgacagaacaaaaatatat
agacatgtcaatacagttatattttataaaatgaagcaaaaataaacagc
tttgtagtatgtgaaagaatgctggaataagacctcatcatgaggctaaa
aagcaaaaatttctcaaggagcaaagagacatggtatacctgtgagtaac
agaaccatgatttgaacacgtgcaattattttgtttttgtgcagaggaca
acagaacacagaaaatagacaggagagttccaataaactttctgtcacag
aaagctttatagtacaaagaaaaaacccaattcatataaatatcaaagaa
ggttaaaatctttccaatatactacaaaaaaagcaatttactttgttttg
ttgttgttgttgttgttgttgttttgattaaccatattgtgttaccaaag
tattaatagccacaggcattgcttaaggcataaaactcattatttgtttt
cttcaggagagataatttgtatttattcctagaaagaataaaataaatca
cacaacttggagtttctttcaagatgatgtaagcactacccttattttcc
aaatctcacataagatgtattctcacattcacagctgctaaatcattatt
cactacatgaacgcacagtccagatgttctttctgattaattaggtatag
ctatatttattgtagtttccatgtggtaactacacaattactgatgctgt
caggacatgcatattcttttctgataatgggacaaggggataagctctta
gaacagagcttgcctgtcttcttgtctatcataatcctgtacatcaataa
aagctttcctttgcactgtctatagctttcagccacagcattcttcccaa
tgcatacagtgtgtatattggggaaaaggtattttgttttgatttgtcat
gtgcccatcacttaatcagtgatatctctagtttgaaagcaaagaaggaa
caactctatcatattcattggttctgtttagtgactcttgtcagtttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20025678_20026757
seq2: B6Ng01-283L16.b_47_1117 (reverse)

seq1  TAAAGGCGTGTGCCACCACACCTGGCAAATATTCTTTTTCTATTATTTTC  50
      |||| ||||||| |||||||||| ||||||| || ||||||| |||||  
seq2  TAAA-GCGTGTG-CACCACACCT-GCAAATA-TCCTTTTCTA-TATTT--  43

seq1  TTTTACCAGAGCAATATGTTTTCGCATCTACTGACCCATCCATCTCTCTA  100
       ||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  CTTTACCAGAGC-ATATGTTTTCGCATCTACTGACCCAT-CATCTCTCTA  91

seq1  TCCCAAAACAGTCTTTTATTGCCTTAAATAAACTCACTAGTATACCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAACAGTCTTTTATTGCCTTAAATAAACTCACTAGTATACCATTA  141

seq1  AGTTACCTATTCTGTTAGTCCCAGTTACAGTGTTTTCTCAATTTGATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTATTCTGTTAGTCCCAGTTACAGTGTTTTCTCAATTTGATTAC  191

seq1  TTTTTTGAAATCTCTTGGTTAGCATTATTTTTTCCAGGTTATGTACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAAATCTCTTGGTTAGCATTATTTTTTCCAGGTTATGTACATTT  241

seq1  AGAATACAGTATATTTGTGACATAGGTGGCACAAGCTTTCCTTTTATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGTATATTTGTGACATAGGTGGCACAAGCTTTCCTTTTATGTA  291

seq1  ACTTCAGTAAGAATAGAAGTAAAACAGATAAATATGAGTAAAAGGTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTAAGAATAGAAGTAAAACAGATAAATATGAGTAAAAGGTTGGT  341

seq1  GGAAACATAACTTTGGAACAAATGAAAATCTTCACTTGGAATGTTTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATAACTTTGGAACAAATGAAAATCTTCACTTGGAATGTTTGTAT  391

seq1  GTGGACATGCACATGTGCACTCCCTGCATCATAAAGAACAAGTCTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATGCACATGTGCACTCCCTGCATCATAAAGAACAAGTCTCTTTA  441

seq1  AAGGTGAGTTCAACTGAGCTTAAAGATACTCTAATCTCTTCATGGTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGTTCAACTGAGCTTAAAGATACTCTAATCTCTTCATGGTAGGA  491

seq1  AAAATATGCTTTATATTACTTCTGAGACTACCAAAGTGGAAAAGAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGCTTTATATTACTTCTGAGACTACCAAAGTGGAAAAGAAGTAA  541

seq1  ATTAAAAGCTGTTAGAAAACTCAGTGACTGTAAACCTGACTGTGAGGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGCTGTTAGAAAACTCAGTGACTGTAAACCTGACTGTGAGGTAC  591

seq1  TGTTCACACAAAACTAGCAATGAAAACACCATAATCCTCTGGATTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACACAAAACTAGCAATGAAAACACCATAATCCTCTGGATTTTCTC  641

seq1  CTTACTTCCTATGAACTTTGGTTGCATACTAAATGCATGGTTCTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCCTATGAACTTTGGTTGCATACTAAATGCATGGTTCTTTTTTT  691

seq1  TTTTTAAGACCTTCAAGTTTCATACTAATCGAAAGAAGCACATATGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGACCTTCAAGTTTCATACTAATCGAAAGAAGCACATATGCTAA  741

seq1  ACTTGTAAATATGAAAAAATTGACTCAAATTTCTAATGTAATTTCATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAAATATGAAAAAATTGACTCAAATTTCTAATGTAATTTCATCCC  791

seq1  TTCATTTTTGACCAGGATGACCTTGACATGAAGATGTAAGACAGAGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTGACCAGGATGACCTTGACATGAAGATGTAAGACAGAGTTTA  841

seq1  AATGGATCTAACTGTGCCTGCACTTCAAGCAATTCAAATTCACTTTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATCTAACTGTGCCTGCACTTCAAGCAATTCAAATTCACTTTATAT  891

seq1  CTCACTAGGAGCTTTCAAAAAATACCCGTCTAATACTCAATTATGCTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAGGAGCTTTCAAAAAATACCCGTCTAATACTCAATTATGCTGTT  941

seq1  CCTCATAGTTAGAAACTAAACAATGTTCAGTGTGGGTTCTTTGGATGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAGTTAGAAACTAAACAATGTTCAGTGTGGGTTCTTTGGATGTGA  991

seq1  TTTGGAAATGAGAATAAACGATGATCTTGTAATGGTATCTTTTACCATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAATGAGAATAAACGATGATCTTGTAATGGTATCTTTTACCATAA  1041

seq1  TTTTAAGCAGGGAAGCTTGATAAAGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  TTTTAAGCAGGGAAGCTTGATAAAGAATTC  1071


seq1: chr6_19858150_19859262
seq2: B6Ng01-283L16.g_65_1164

seq1  GAATTCAGTTTGGCAGAACTGAGAATGGTGGGAAACTGTGAAAGAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGGCAGAACTGAGAATGGTGGGAAACTGTGAAAGAAGGAA  50

seq1  CAGGAAAAGTGCTTTACTTGATAGTTCTAGATGACAGAACAAAAATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGTGCTTTACTTGATAGTTCTAGATGACAGAACAAAAATATAT  100

seq1  AGACATGTCAATACAGTTATATTTTATAAAATGAAGCAAAAATAAACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTCAATACAGTTATATTTTATAAAATGAAGCAAAAATAAACAGC  150

seq1  TTTGTAGTATGTGAAAGAATGCTGGAATAAGACCTCATCATGAGGCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTATGTGAAAGAATGCTGGAATAAGACCTCATCATGAGGCTAAA  200

seq1  AAGCAAAAATTTCTCAAGGAGCAAAGAGACATGGTATACCTGTGAGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAATTTCTCAAGGAGCAAAGAGACATGGTATACCTGTGAGTAAC  250

seq1  AGAACCATGATTTGAACACGTGCAATTATTTTGTTTTTGTGCAGAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATGATTTGAACACGTGCAATTATTTTGTTTTTGTGCAGAGGACA  300

seq1  ACAGAACACAGAAAATAGACAGGAGAGTTCCAATAAACTTTCTGTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACACAGAAAATAGACAGGAGAGTTCCAATAAACTTTCTGTCACAG  350

seq1  AAAGCTTTATAGTACAAAGAAAAAACCCAATTCATATAAATATCAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTATAGTACAAAGAAAAAACCCAATTCATATAAATATCAAAGAA  400

seq1  GGTTAAAATCTTTCCAATATACTACAAAAAAAGCAATTTACTTTGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAATCTTTCCAATATACTACAAAAAAAGCAATTTACTTTGTTTTG  450

seq1  TTGTTGTTGTTGTTGTTGTTGTTTTGATTAACCATATTGTGTTACCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTGTTGTTTTGATTAACCATATTGTGTTACCAAAG  500

seq1  TATTAATAGCCACAGGCATTGCTTAAGGCATAAAACTCATTATTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAGCCACAGGCATTGCTTAAGGCATAAAACTCATTATTTGTTTT  550

seq1  CTTCAGGAGAGATAATTTGTATTTATTCCTAGAAAGAATAAAATAAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAGAGATAATTTGTATTTATTCCTAGAAAGAATAAAATAAATCA  600

seq1  CACAACTTGGAGTTTCTTTCAAGATGATGTAAGCACTACCCTTATTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTGGAGTTTCTTTCAAGATGATGTAAGCACTACCCTTATTTTCC  650

seq1  AAATCTCACATAAGATGTATTCTCACATTCACAGCTGCTAAATCATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCACATAAGATGTATTCTCACATTCACAGCTGCTAAATCATTATT  700

seq1  CACTACATGAACGCACAGTCCAGATGTTCTTTCTGATTAATTAGGTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATGAACGCACAGTCCAGATGTTCTTTCTGATTAATTAGGTATAG  750

seq1  CTATATTTATTGTAGTTTCCATGTGGTAACTACACAATTACTGATGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTATTGTAGTTTCCATGTGGTAACTACACAATTACTGATGCTGT  800

seq1  CAGGACATGCATATTCTTTTCTGATAATGGGACAAGGGGATAAGCTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATGCATATTCTTTTCTGATAATGGGACAAGGGGATAAGCTCTTA  850

seq1  GAACAGAGCTTGCCTGTCTTCTTGTCTATCATAATCCTGTACATCAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGCTTGCCTGTCTTCTTGTCTATCATAATCCTGTACATCAATAA  900

seq1  AAGCTTTCC-TTGCACTGTCTATAGCTTTCAGCCACAGCATTCTTCCCAA  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCCTTTGCACTGTCTATAGCTTTCAGCCACAGCATTCTTCCCAA  950

seq1  TGCATACAGTGTGTATATTGGGGAAAAGGTTATTTTGTTTTGATTTGTCA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCATACAGTGTGTATATTGGGGAAAAGG-TATTTTGTTTTGATTTGTCA  999

seq1  TGTTGCCCATCACTTATTCAGTGATATCTCTAATTTTTGGAAATAGCAAA  1049
      || ||||||||||||| ||||||||||||||| |||   |||  ||||||
seq2  TG-TGCCCATCACTTAATCAGTGATATCTCTAGTTT---GAA--AGCAAA  1043

seq1  GAAAGGAAACAAACCTTCTATTCATATTCATTTGTTCTGGTTTAGTGACT  1099
      |||  | |||||    |||| ||||||||||| ||||| |||||||||||
seq2  GAA--GGAACAA---CTCTA-TCATATTCATTGGTTCT-GTTTAGTGACT  1086

seq1  CTTGTCAGTTTATT  1113
      ||||||||||||||
seq2  CTTGTCAGTTTATT  1100


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