BAC Information

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BAC

Clone NameB6Ng01-284D03
Chromosome6 (Build37)
Map Location 140,184,125 - 140,306,513
singlet/doubletdoublet
Overlap geneLOC100042680, LOC100039020
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
Downstream geneLOC269810, Plekha5, Aebp2, EG664868, LOC664875, Pde3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284D03.bB6Ng01-284D03.g
ACCGA082960GA082961
length1,1871,029
definitionB6Ng01-284D03.b B6Ng01-284D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,305,324 - 140,306,513)(140,184,125 - 140,185,141)
sequence
gaattccctgggtgagcgtgcacattcatccttctcttacttctttattt
ctcttgctcattcacaataaatattaaaagccacatattcggtatttaat
ctcagtccactgtcttcagaaggaagaaggcatggtgtcaaaatactgtg
ttcagaaactacttggatcacctctttctgcctttacacctcccttgtgc
ttatgttatctttttgaaatggaataaggttcatttgttttagttcatat
tccctttacaggataaaatatattcattgttattttacgactgttaaaac
attgacatggttcagaagtcaaagtggtaaaaatgacaaaaaaataacac
cgctcccgacctttcctcacatttctacctcaagaagattttttcagaac
tttaaagtgacgacgctcccttttgtttcaaactctgtaaccacctctct
ccccaaccctggcgtgttccgacctgcctaatttgtactttcctcctgtg
cagggcccctctctgcttcctctgttccaaccacacacctttccgcagtc
ctttgaatagtggtgcttctgatttctaagacattctcacacactctgcc
ctcatctcagtccattttctttggatacagtagaacacttgagattggat
aatgtataaggatggagcccttgctgggtgtcgtggtgtgagcatttcat
cccagcactctgaagaaggcttctagtgagatcctctcatgaacaaacaa
acaagcatccacaaaaaaaaaaaatgctggaaaaaaatgattcagtggtt
aaaagcacttattgctctaacagaggaccaaaaatggattctcaacacca
tatcaggaggctttttatctagccaacttcatgggatctgacatcttctg
tcctctggtgacactgaactaactaacactcacatatactcacctagacg
cacatacatacacattattaaaaacaacacacatacatgaattagaccag
agctggacatgggtgattttctcaatagttgtaacctaattggggatcct
gaggcaggaggatgctcaagagttgaataataagcttaggcaatatactg
agagcctctttcaaaaaaaattcattatccttaaaaggactaatcagctc
atgaatctacagtcaaggagttcaacaatccacggtg
gaattcaatggcagttaggcaacaccagcagtagatgaatggaaactact
agtttctagttcattttggcctgatgtgactatcacagatcagctgagac
taggtcatgtttaaacaccagaacttcattttgtttttgtttttgttttt
gtttttgtttttgttttatatatagctctggatgtagggaaggtccagag
ctggcatctactgagagcattcttgataagtcataccattcctgctaagt
cataccattcttgctaagtcataccattcttgctaagtcacaccatgctg
gaaggtagaaggggaagaaggtcaaaggtaactatgtgcattgcttttat
accaaacttactctcactataatgaacctggtccttgcctgagggcagaa
gactcataacctactcagctttcctctccttactgcacattacatcccta
acacatggtctttgggaggcacctttaccaccatgaaaactgtgacagtt
tcctccttttcaactgcatatttgttattccatgcataagtatttaaatt
tccaaaagctccagaagtattaaaattgccttcccatcattcctccccaa
cctatgtattccctacatcctactctcatagcagaagtcttcattgacct
tagagacctagaaaagtcaggcagagcatgtggagggaggcgtgactcca
taaaccctccaggtactagagtcacccttaaccaaggaaccgtttctcag
cagataggatatctgtccccactgactttgaattttgagaaattccagaa
gagagacaggggtggggaggacttcaattgatctaaaaagcaaaacaatg
tgggctcaaagtcgctcaagaaaatgagttaccttgtggagggctagcct
tccccttgttgcaattggcaaagactctcaggaaaatgacagtttaacct
tatggggagtcagcctggccctgtgcaatggcttgctatctgaaaattag
gcaaatcaattgctttttttttcttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_140305324_140306513
seq2: B6Ng01-284D03.b_46_1232 (reverse)

seq1  CACCGTG--ATGTTGAACTCTTTGGCCTGTAGAATCATGAGCTGAATAAA  48
      |||||||   |||||||||| || | ||||||| ||||||||||| ||  
seq2  CACCGTGGATTGTTGAACTCCTT-GACTGTAGATTCATGAGCTGATTA--  47

seq1  GTTCCTTTTTTAAAGAATAATTGATTTTTTTTTTGAAGAGGGCTCTCAGT  98
        |||||||   ||| |||| ||| ||||||||  |||| ||||||||||
seq2  -GTCCTTTT---AAGGATAA-TGAATTTTTTTTGAAAGA-GGCTCTCAGT  91

seq1  ATATTGCCTAAGC-TATTATCAAACTCCTGAGGCATCCTCCTGCCTCA-G  146
      ||||||||||||| ||||||  ||||| ||| |||||||||||||||| |
seq2  ATATTGCCTAAGCTTATTATTCAACTCTTGA-GCATCCTCCTGCCTCAGG  140

seq1  ATCCCCAAATA-GTTACAACTA-TGAGAAAATCA-CCATGTCCAGCTCTG  193
      |||||||| || |||||||||| ||||||||||| |||||||||||||||
seq2  ATCCCCAATTAGGTTACAACTATTGAGAAAATCACCCATGTCCAGCTCTG  190

seq1  GTCTAATTCATGTATGTGTGTTGTTTTTAATAATGTGTATGTATGTGCGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTCATGTATGTGTGTTGTTTTTAATAATGTGTATGTATGTGCGT  240

seq1  CTAGGTGAGTATATGTGAGTGTTAGTTAGTTCAGTGTCACCAGAGGACAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGAGTATATGTGAGTGTTAGTTAGTTCAGTGTCACCAGAGGACAG  290

seq1  AAGATGTCAGATCCCATGAAGTTGGCTAGATAAAAAGCCTCCTGATATGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCAGATCCCATGAAGTTGGCTAGATAAAAAGCCTCCTGATATGG  340

seq1  TGTTGAGAATCCATTTTTGGTCCTCTGTTAGAGCAATAAGTGCTTTTAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGAATCCATTTTTGGTCCTCTGTTAGAGCAATAAGTGCTTTTAAC  390

seq1  CACTGAATCATTTTTTTCCAGCATTTTTTTTTTTTGTGGATGCTTGTTTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATCATTTTTTTCCAGCATTTTTTTTTTTTGTGGATGCTTGTTTG  440

seq1  TTTGTTCATGAGAGGATCTCACTAGAAGCCTTCTTCAGAGTGCTGGGATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCATGAGAGGATCTCACTAGAAGCCTTCTTCAGAGTGCTGGGATG  490

seq1  AAATGCTCACACCACGACACCCAGCAAGGGCTCCATCCTTATACATTATC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCACACCACGACACCCAGCAAGGGCTCCATCCTTATACATTATC  540

seq1  CAATCTCAAGTGTTCTACTGTATCCAAAGAAAATGGACTGAGATGAGGGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCAAGTGTTCTACTGTATCCAAAGAAAATGGACTGAGATGAGGGC  590

seq1  AGAGTGTGTGAGAATGTCTTAGAAATCAGAAGCACCACTATTCAAAGGAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGTGAGAATGTCTTAGAAATCAGAAGCACCACTATTCAAAGGAC  640

seq1  TGCGGAAAGGTGTGTGGTTGGAACAGAGGAAGCAGAGAGGGGCCCTGCAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGAAAGGTGTGTGGTTGGAACAGAGGAAGCAGAGAGGGGCCCTGCAC  690

seq1  AGGAGGAAAGTACAAATTAGGCAGGTCGGAACACGCCAGGGTTGGGGAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAAGTACAAATTAGGCAGGTCGGAACACGCCAGGGTTGGGGAGA  740

seq1  GAGGTGGTTACAGAGTTTGAAACAAAAGGGAGCGTCGTCACTTTAAAGTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTTACAGAGTTTGAAACAAAAGGGAGCGTCGTCACTTTAAAGTT  790

seq1  CTGAAAAAATCTTCTTGAGGTAGAAATGTGAGGAAAGGTCGGGAGCGGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAAATCTTCTTGAGGTAGAAATGTGAGGAAAGGTCGGGAGCGGTG  840

seq1  TTATTTTTTTGTCATTTTTACCACTTTGACTTCTGAACCATGTCAATGTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTGTCATTTTTACCACTTTGACTTCTGAACCATGTCAATGTT  890

seq1  TTAACAGTCGTAAAATAACAATGAATATATTTTATCCTGTAAAGGGAATA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTCGTAAAATAACAATGAATATATTTTATCCTGTAAAGGGAATA  940

seq1  TGAACTAAAACAAATGAACCTTATTCCATTTCAAAAAGATAACATAAGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAAACAAATGAACCTTATTCCATTTCAAAAAGATAACATAAGCA  990

seq1  CAAGGGAGGTGTAAAGGCAGAAAGAGGTGATCCAAGTAGTTTCTGAACAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGGTGTAAAGGCAGAAAGAGGTGATCCAAGTAGTTTCTGAACAC  1040

seq1  AGTATTTTGACACCATGCCTTCTTCCTTCTGAAGACAGTGGACTGAGATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTGACACCATGCCTTCTTCCTTCTGAAGACAGTGGACTGAGATT  1090

seq1  AAATACCGAATATGTGGCTTTTAATATTTATTGTGAATGAGCAAGAGAAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCGAATATGTGGCTTTTAATATTTATTGTGAATGAGCAAGAGAAA  1140

seq1  TAAAGAAGTAAGAGAAGGATGAATGTGCACGCTCACCCAGGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGTAAGAGAAGGATGAATGTGCACGCTCACCCAGGGAATTC  1187

seq1: chr6_140184125_140185141
seq2: B6Ng01-284D03.g_67_1095

seq1  GAATTCAATGGCAGTTAGGCAACACCAGCAGTAGATGAATGGAAACTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCAGTTAGGCAACACCAGCAGTAGATGAATGGAAACTACT  50

seq1  AGTTTCTAGTTCATTTTGGCCTGATGTGACTATCACAGATCAGCTGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAGTTCATTTTGGCCTGATGTGACTATCACAGATCAGCTGAGAC  100

seq1  TAGGTCATGTTTAAACACCAGAACTTCATTTTGTTTTTGTTTTTGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATGTTTAAACACCAGAACTTCATTTTGTTTTTGTTTTTGTTTTT  150

seq1  GTTTTTGTTTTTGTTTTATATATAGCTCTGGATGTAGGGAAGGTCCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTGTTTTATATATAGCTCTGGATGTAGGGAAGGTCCAGAG  200

seq1  CTGGCATCTACTGAGAGCATTCTTGATAAGTCATACCATTCCTGCTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATCTACTGAGAGCATTCTTGATAAGTCATACCATTCCTGCTAAGT  250

seq1  CATACCATTCTTGCTAAGTCATACCATTCTTGCTAAGTCACACCATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCATTCTTGCTAAGTCATACCATTCTTGCTAAGTCACACCATGCTG  300

seq1  GAAGGTAGAAGGGGAAGAAGGTCAAAGGTAACTATGTGCATTGCTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAGAAGGGGAAGAAGGTCAAAGGTAACTATGTGCATTGCTTTTAT  350

seq1  ACCAAACTTACTCTCACTATAATGAACCTGGTCCTTGCCTGAGGGCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTTACTCTCACTATAATGAACCTGGTCCTTGCCTGAGGGCAGAA  400

seq1  GACTCATAACCTACTCAGCTTTCCTCTCCTTACTGCACATTACATCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATAACCTACTCAGCTTTCCTCTCCTTACTGCACATTACATCCCTA  450

seq1  ACACATGGTCTTTGGGAGGCACCTTTACCACCATGAAAACTGTGACAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTCTTTGGGAGGCACCTTTACCACCATGAAAACTGTGACAGTT  500

seq1  TCCTCCTTTTCAACTGCATATTTGTTATTCCATGCATAAGTATTTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTTCAACTGCATATTTGTTATTCCATGCATAAGTATTTAAATT  550

seq1  TCCAAAAGCTCCAGAAGTATTAAAATTGCCTTCCCATCATTCCTCCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGCTCCAGAAGTATTAAAATTGCCTTCCCATCATTCCTCCCCAA  600

seq1  CCTATGTATTCCCTACATCCTACTCTCATAGCAGAAGTCTTCATTGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTATTCCCTACATCCTACTCTCATAGCAGAAGTCTTCATTGACCT  650

seq1  TAGAGACCTAGAAAAGTCAGGCAGAGCATGTGGAGGGAGGCGTGACTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCTAGAAAAGTCAGGCAGAGCATGTGGAGGGAGGCGTGACTCCA  700

seq1  TAAACCCTCCAGGTACTAGAGTCACCCTTAACCAAGGAACCGTTTCTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTCCAGGTACTAGAGTCACCCTTAACCAAGGAACCGTTTCTCAG  750

seq1  CAGATAGGATATCTGTCCCCACTGACTTTGAATTTTGAGAAATTCCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGGATATCTGTCCCCACTGACTTTGAATTTTGAGAAATTCCAGAA  800

seq1  GAGAGACAGGGGTGGGGAGGACTTC-ATTGATCT-AAAAGC-AAACAATG  847
      ||||||||||||||||||||||||| |||||||| |||||| ||||||||
seq2  GAGAGACAGGGGTGGGGAGGACTTCAATTGATCTAAAAAGCAAAACAATG  850

seq1  T-GGCTCAAAGTCGCTCAAGAAAATGAGTTACCTTGTGGAGGGCTAGCCT  896
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCAAAGTCGCTCAAGAAAATGAGTTACCTTGTGGAGGGCTAGCCT  900

seq1  TCCC--TG-TGCAA-TGGCAAAGACTCTCAGGAAAATGACAGTT--ACCT  940
      ||||  || ||||| |||||||||||||||||||||||||||||  ||||
seq2  TCCCCTTGTTGCAATTGGCAAAGACTCTCAGGAAAATGACAGTTTAACCT  950

seq1  TATGGGGAGTCAGCCT-GCCCTGTGCAATGGCTTGCTATCTG-AAATTAG  988
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  TATGGGGAGTCAGCCTGGCCCTGTGCAATGGCTTGCTATCTGAAAATTAG  1000

seq1  GC-AATCAATTGCTTTTTTTTTTCTTCAAA  1017
      || |||||||||| ||||||||||||||||
seq2  GCAAATCAATTGC-TTTTTTTTTCTTCAAA  1029