BAC Information

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BAC

Clone NameB6Ng01-284L04
Chromosome6 (Build37)
Map Location 120,312,284 - 120,503,569
singlet/doubletdoublet
Overlap geneJarid1a, Il17ra, Cecr6, Cecr5
Upstream geneAdipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77
Downstream gene1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284L04.bB6Ng01-284L04.g
ACCGA083335GA083336
length1,1241,056
definitionB6Ng01-284L04.b B6Ng01-284L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,312,284 - 120,313,389)(120,502,517 - 120,503,569)
sequence
gaattcatttttctttaaaagttgcttcttttgttgcctttttttttttt
ttttttttttttttttttaaatcccagggcagccttgacacagacagctg
aggatgatcttggagttgtgatccttcaggctccatccccagccaaataa
caatatattttgattgcgtatgtaatgaaagaacttttgatgagttttaa
attttcaagtataccaggtacagttgtgcacacctttgctcctcccagca
cttgggaggtagaggcaggggtatctctgggagtcagaggccagtctggt
ctacagagaggtccaggacaaccaaggctctacagagaaaccttgtcttg
aaaaacaaacacaaaaatttaaaacagtcttttgaattttactatttctc
ttttgatgtgcatagttctttttttttcaaattaaatgctaaatgaccta
agtcttgttataaaatattttagtaattgtatataattcatcataccttc
ctatgtccattttttctctgtatatcactttttcccttttttctttaagc
aagaaatggagactatactggagttacagctcaggacacatttacctaat
atgttcaaggacttgggttcaatttctagtacagaaagtaattgaacaaa
ctagcctgagtccatttccttgcattcctgatcctgactagcagaataga
acctttatttatgagtcagcgttttacctgatagccacccccccactcca
acccccccagcctttgattacttaatgtgtgaatttgtagatgaatgtat
gtggacctggcgtgaaagtgaggtcagctttcagttctctcctttaacca
tggggttccaggaatcaaacttaggatttcaagcttggtggcaagtgccc
ttcaccagctgagccactgttctggccctttaccccgttattcttgacca
ttcttggaacccgaataagtgtaccatgtggcccttaatggtgccttctt
ttctacatcctcctttccccagaaattgagcttaatagatccttgagccc
accacacatggatttcttaccttacattcctcccgtagccctaatcaggc
cctcaaatctcaatgccagctcga
gaattccatagtgtgctttaaatcagacctgtgagctcacttgtgtctct
ctttctatcttggtaatgggacaccccagcatgctggacctctgcagaat
aaaatgctctttgtgtttacttttgtgaatcacagacccttacaagactc
tgacctcagaagcagggcaacagtctcttgcaaattggaagtaatttcct
tcagggatcttctgtgtgcattaactgacaaataacattgcatttgtcac
aataaacgttacaaataacttttaaagtcccgtgagagcagagctgggga
tgtagctcagtgagaagactgcctgcctgggccacacgcagccctgagtg
ggatccccagcagggcataagccaggtgtgacagtgcgtggatgtaaccc
agcactgagggccggaagaaggatgcacgcctgttgactgactcttggaa
gagattttcttgagttcagcatttatgatggcatcacagttcatgtgcta
aaactagctccaaagtagcccagaaaagaattcattaataaacagaaagt
cagaacactttttattcactatgtattttaagatatatatttgagtatat
attttaaaaatataaacaaatacccatatctatctatctatctgtctatc
tgtctatctatctatctgtctgtctatctatctatctatctatctgtcta
tctgtctatctatctatctatctatctatctatctgtctgtctatctatt
tatctatctatctatctgtctgtctatcttggagtctccattttaagaaa
gtctctctatatagccctggctgtcctacctagaacttgctttgttggcc
aggctggttccagactcacagactcacagagatctacctgccttttgtct
cctgagtagagtattaaaggaatgtgaacagcatccaactccttgagaca
gggatctctcattgcctgaagtttgttcataagcttgacttccctgttcc
agtgagaccctgcttcccagcgctgcatgacattgacagttgtgcctctg
ttacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120312284_120313389
seq2: B6Ng01-284L04.b_48_1171

seq1  GAATTCATTTTTCTTTAAAAGTTGCTTCTTTTGTTGCCTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTCTTTAAAAGTTGCTTCTTTTGTTGCCTTTTTTTTTTTT  50

seq1  TTTTTTTTTTTTTTTTTTAAATCCCAGGGCAGCCTTGACACAGACAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTAAATCCCAGGGCAGCCTTGACACAGACAGCTG  100

seq1  AGGATGATCTTGGAGTTGTGATCCTTCAGGCTCCATCCCCAGCCAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATCTTGGAGTTGTGATCCTTCAGGCTCCATCCCCAGCCAAATAA  150

seq1  CAATATATTTTGATTGCGTATGTAATGAAAGAACTTTTGATGAGTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATTTTGATTGCGTATGTAATGAAAGAACTTTTGATGAGTTTTAA  200

seq1  ATTTTCAAGTATACCAGGTACAGTTGTGCACACCTTTGCTCCTCCCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGTATACCAGGTACAGTTGTGCACACCTTTGCTCCTCCCAGCA  250

seq1  CTTGGGAGGTAGAGGCAGGGGTATCTCTGGGAGTCAGAGGCCAGTCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGTAGAGGCAGGGGTATCTCTGGGAGTCAGAGGCCAGTCTGGT  300

seq1  CTACAGAGAGGTCCAGGACAACCAAGGCTCTACAGAGAAACCTTGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGAGGTCCAGGACAACCAAGGCTCTACAGAGAAACCTTGTCTTG  350

seq1  AAAAACAAACACAAAAATTTAAAACAGTCTTTTGAATTTTACTATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACACAAAAATTTAAAACAGTCTTTTGAATTTTACTATTTCTC  400

seq1  TTTTGATGTGCATAGTTCTTTTTTTTTCAGATTAAATGCTAAATGACCTA  450
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTGATGTGCATAGTTCTTTTTTTTTCAAATTAAATGCTAAATGACCTA  450

seq1  AGTCTTGTTATAAAATATTTTAGTAATTGTATATAATTCATCATACCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGTTATAAAATATTTTAGTAATTGTATATAATTCATCATACCTTC  500

seq1  CTATGTCCATTTTTTCTCTGTATATCACTTTTTCCCTTTTTTCTTTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCATTTTTTCTCTGTATATCACTTTTTCCCTTTTTTCTTTAAGC  550

seq1  AAGAAATGGAGACTATACTGGAGTTACAGCTCAGGACACATTTACCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGAGACTATACTGGAGTTACAGCTCAGGACACATTTACCTAAT  600

seq1  ATGTTCAAGGACTTGGGTTCAATTTCTAGTACAGAAAGTAATTGAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAAGGACTTGGGTTCAATTTCTAGTACAGAAAGTAATTGAACAAA  650

seq1  CTAGCCTGAGTCCATTTCCTTGCATTCCTGATCCTGACTAGCAGAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGAGTCCATTTCCTTGCATTCCTGATCCTGACTAGCAGAATAGA  700

seq1  ACCTTTATTTATGAGTCAGCGTTTTACCTGATAGCCACCCCCCCACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATTTATGAGTCAGCGTTTTACCTGATAGCCACCCCCCCACTCCA  750

seq1  ACCCCCCCAGCCTTTGATTACTTAATGTGTGAATTTGTAGATGAATGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCAGCCTTTGATTACTTAATGTGTGAATTTGTAGATGAATGTAT  800

seq1  GTGGACCTGGCGTGAAGGTGAGGTCAGCTTTCAGTTCTCTCCTTTAACCA  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTGGACCTGGCGTGAAAGTGAGGTCAGCTTTCAGTTCTCTCCTTTAACCA  850

seq1  TGGGGTTCCAGGAATCAAACTTAGGATTTCAAGCTTGGTGGCAAGTGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCCAGGAATCAAACTTAGGATTTCAAGCTTGGTGGCAAGTGCCC  900

seq1  TTCA-CAGCTGAGCCACTGTTCTGGCCC-TTACCCCG-TATTCTTGACCA  947
      |||| ||||||||||||||||||||||| |||||||| ||||||||||||
seq2  TTCACCAGCTGAGCCACTGTTCTGGCCCTTTACCCCGTTATTCTTGACCA  950

seq1  TTC-TGGAACTCG-ATAAGTGTACCATGTGGCC--TTATGGTGC--TC-T  990
      ||| |||||| || |||||||||||||||||||  | |||||||  || |
seq2  TTCTTGGAACCCGAATAAGTGTACCATGTGGCCCTTAATGGTGCCTTCTT  1000

seq1  TTCTACAT-CTCC-TTCCCCAG-AATTGAG-TTTATAG-TCC-TGAG-CC  1033
      |||||||| |||| |||||||| ||||||| || |||| ||| |||| ||
seq2  TTCTACATCCTCCTTTCCCCAGAAATTGAGCTTAATAGATCCTTGAGCCC  1050

seq1  ACCACACAGGGATTTTCCTTA-CTTACAAGGTCTCCCGTAG-CCTAATCA  1081
      |||||||| ||||||  |||| ||||| |   ||||||||| ||||||||
seq2  ACCACACATGGATTT--CTTACCTTAC-ATTCCTCCCGTAGCCCTAATCA  1097

seq1  GG-CCTCAAAT-TCATATG-CAGCTCGA  1106
      || |||||||| ||| ||| ||||||||
seq2  GGCCCTCAAATCTCA-ATGCCAGCTCGA  1124

seq1: chr6_120502517_120503569
seq2: B6Ng01-284L04.g_69_1124 (reverse)

seq1  ATGT-ACAGA-GCACACCTGTCATTGTCATGCCAGCGCTGGGAAGGCAGG  48
      |||| ||||| ||||| |||||| ||||||| |||||||||||| |||||
seq2  ATGTAACAGAGGCACAACTGTCAATGTCATG-CAGCGCTGGGAA-GCAGG  48

seq1  GTCTCACTGG-ACAGGGAAGTCAAGCCTTATGAACAAACTTCAGGC-ATG  96
      |||||||||| |||||||||||||| |||||||||||||||||||| |||
seq2  GTCTCACTGGAACAGGGAAGTCAAG-CTTATGAACAAACTTCAGGCAATG  97

seq1  AGAGAT-CCTGTCTCAAGGGAGTTGGATGCTGTTCACATTCCTTTAATAC  145
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGATCCCTGTCTCAA-GGAGTTGGATGCTGTTCACATTCCTTTAATAC  146

seq1  TCTACTCAGGAGAC-AAAGGCAGGTAGATCTCTGTGAGTCTGTGAGTCTG  194
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTACTCAGGAGACAAAAGGCAGGTAGATCTCTGTGAGTCTGTGAGTCTG  196

seq1  GAACCAGCCTGGCCAACAAAGCAAGTTCTAGGTAGGACAGCCAGGGCTAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGCCTGGCCAACAAAGCAAGTTCTAGGTAGGACAGCCAGGGCTAT  246

seq1  ATAGAGAGACTTTCTT-AAATGGAGACTCCAAGATAGACAGACAGATAGA  293
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAGAGAGACTTTCTTAAAATGGAGACTCCAAGATAGACAGACAGATAGA  296

seq1  TAGATAGATAAATAGATAGACAGACAGATAGATAGATAGATAGATAGATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAAATAGATAGACAGACAGATAGATAGATAGATAGATAGATA  346

seq1  GATAGACAGATAGACAGATAGATAGATAGATAGATAGACAGACAGATAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACAGATAGACAGATAGATAGATAGATAGATAGACAGACAGATAGA  396

seq1  TAGATAGACAGATAGACAGATAGATAGATAGATATGGGTATTTGTTTATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGACAGATAGACAGATAGATAGATAGATATGGGTATTTGTTTATA  446

seq1  TTTTTAAAATATATACTCAAATATATATCTTAAAATACATAGTGAATAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATATATACTCAAATATATATCTTAAAATACATAGTGAATAAA  496

seq1  AAGTGTTCTGACTTTCTGTTTATTAATGAATTCTTTTCTGGGCTACTTTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCTGACTTTCTGTTTATTAATGAATTCTTTTCTGGGCTACTTTG  546

seq1  GAGCTAGTTTTAGCACATGAACTGTGATGCCATCATAAATGCTGAACTCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGTTTTAGCACATGAACTGTGATGCCATCATAAATGCTGAACTCA  596

seq1  AGAAAATCTCTTCCAAGAGTCAGTCAACAGGCGTGCATCCTTCTTCCGGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCTCTTCCAAGAGTCAGTCAACAGGCGTGCATCCTTCTTCCGGC  646

seq1  CCTCAGTGCTGGGTTACATCCACGCACTGTCACACCTGGCTTATGCCCTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGCTGGGTTACATCCACGCACTGTCACACCTGGCTTATGCCCTG  696

seq1  CTGGGGATCCCACTCAGGGCTGCGTGTGGCCCAGGCAGGCAGTCTTCTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATCCCACTCAGGGCTGCGTGTGGCCCAGGCAGGCAGTCTTCTCA  746

seq1  CTGAGCTACATCCCCAGCTCTGCTCTCACGGGACTTTAAAAGTTATTTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTACATCCCCAGCTCTGCTCTCACGGGACTTTAAAAGTTATTTGT  796

seq1  AACGTTTATTGTGACAAATGCAATGTTATTTGTCAGTTAATGCACACAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTATTGTGACAAATGCAATGTTATTTGTCAGTTAATGCACACAGA  846

seq1  AGATCCCTGAAGGAAATTACTTCCAATTTGCAAGAGACTGTTGCCCTGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTGAAGGAAATTACTTCCAATTTGCAAGAGACTGTTGCCCTGCT  896

seq1  TCTGAGGTCAGAGTCTTGTAAGGGTCTGTGATTCACAAAAGTAAACACAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCAGAGTCTTGTAAGGGTCTGTGATTCACAAAAGTAAACACAA  946

seq1  AGAGCATTTTATTCTGCAGAGGTCCAGCATGCTGGGGTGTCCCATTACCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTTATTCTGCAGAGGTCCAGCATGCTGGGGTGTCCCATTACCA  996

seq1  AGATAGAAAGAGAGACACAAGTGAGCTCACAGGTCTGATTTAAAGCACAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAAGAGAGACACAAGTGAGCTCACAGGTCTGATTTAAAGCACAC  1046

seq1  TATGGAATTC  1053
      ||||||||||
seq2  TATGGAATTC  1056