BAC Information

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BAC

Clone NameB6Ng01-284N20
Chromosome6 (Build37)6 (Build37)
Map Location 87,512,331 - 87,513,29483,208,382 - 83,209,063
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAsprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25
Downstream geneProkr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284N20.bB6Ng01-284N20.g
ACCGA083461GA083462
length1,065976
definitionB6Ng01-284N20.b B6Ng01-284N20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,512,331 - 87,513,294)(83,208,382 - 83,209,063)
sequence
gattcttattgcaaatttaacttttaaatgataagacgttattaagattt
ctttccattttcttttgggtgacttttgctaagttttatctaccccaaaa
gttgtcacttatctgaattgcaaacttagttagaataaaatctgcaccct
ttatgatttttttaatgtatagaatctatgtaggatcgctcctgaagtct
atcttatcctggaaccacatgattgtgggatttttcctactttacaatga
tttgtcttacaaagaaaattttactttttttttttttttagtcttttaaa
aagcaatcttttaatttgatttttttctcacttttatctatttttatttc
ttttccttccattcttatcattgttttttccttctgcattatttggattt
aattttctctttggtttttagcatttttgtagaatctgatatcagattta
aacccttttcaaaatagtcatttacaactacaaattacctcgaagaaatg
cttctgctatatcccacaacatactgatgtattctttcattatcatctaa
ctcaaaatattttaaaatttcccttgtaatttttttactggttcattttt
ttttatatttgatttttgatgccttcagacatgtgtgccatatgctgtaa
acatagtcaccctgttacacctctgatctcctctcccactcctaaagacc
cctttctccttctaaaccatcccctctcttgctttccagccctgtaatgg
tggcactgctcttgtgtatttacaattacatgacattgtcacatccagag
gacagcatttcctatgtctccttccccaccctcagacccctaaaatctct
ctgtcccttttcccatggggttcttgctgggttcatcatttaaatgtctt
gctcaatctccaacttgggagaattattttatattattattaatttgtaa
tcttaatcacattttcagaggaacattattttcagctttttaaatgtatt
aaacttgctttatggggccagaaatagtctactttgacagtcttttgatt
gtttattttcgcatt
gaattcattctctttccatttgggggactatctcagttggaagaattgga
attaagcttgtctaagtgtttcctagacattctgcatgtgagacgtttcc
ttcctgccatgccttctgtactcctcagtggcctgctccgatgctctgcg
tccttttgactttgctggctggctgtgttcaggaactctccacttctagc
tttgccggccaagccaagtcctaggactctctgagcagtcagtgtccttc
cctaccagttgtttttgcttctagaaagctggggtggtttacacaatatc
ttcccacaaatctggtcctacaaaggatgatagatggaaaacaccaacac
aaggagggaaactacaccctagaaaaagcaagaaagtaatctttcaagaa
acccaaaagaaaatagccacacaaacataattccacctctaacaacaaaa
ataacaggaagtaacaatcacttttccttaatatcttttgacatcaatgg
actcaattccccaataaaaagacatagactagcagactggctatgtaatc
aggacccagcattttgctgcacacaggaaacacacctcagtgacaaagac
agacactacctcagggtaaaaggttggaaaacagttttccaagcaaatgg
tcctaagaaacaggctggagtagccgttctaatattgaacaaaattgact
caatagaaacagatgtataaaagttggggtcatagacagatgcacttagc
acttaaaatgagcagaatgcatagaaacaaacacttatctaggactaact
ggctattctgggtcttttgttgttccatatcaaattgaggattttctttc
tatttatgtgaagaatgaggtgaggatgttgattgttgatttcattgaat
cagtaaatttgttttgggtaggaagggtcttttttttcacaatgttaatt
ctaccaatctgtacgcttggaggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87512331_87513294
seq2: B6Ng01-284N20.b_147_1112

seq1  AGTTGTCACTTATCTGAATTGCAAACTTAGTTAGAATAAAATCTGCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCACTTATCTGAATTGCAAACTTAGTTAGAATAAAATCTGCACCC  50

seq1  TTTATGATTTTTTTAATGTATAGAATCTATGTAGGATCGCTCCTGAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATTTTTTTAATGTATAGAATCTATGTAGGATCGCTCCTGAAGTC  100

seq1  TATCTTATCCTGGAACCACATGATTGTGGGATTTTTCCTACTTTACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATCCTGGAACCACATGATTGTGGGATTTTTCCTACTTTACAATG  150

seq1  ATTTGTCTTACAAAGAAAATTTTACTTTTTTTTTTTTTTTAGTCTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTTACAAAGAAAATTTTACTTTTTTTTTTTTTTTAGTCTTTTAA  200

seq1  AAAGCAATCTTTTAATTTGATTTTTTTCTCACTTTTATCTATTTTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCTTTTAATTTGATTTTTTTCTCACTTTTATCTATTTTTATTT  250

seq1  CTTTTCCTTCCATTCTTATCATTGTTTTTTCCTTCTGCATTATTTGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTCCATTCTTATCATTGTTTTTTCCTTCTGCATTATTTGGATT  300

seq1  TAATTTTCTCTTTGGTTTTTAGCATTTTTGTAGAATCTGATATCAGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCTCTTTGGTTTTTAGCATTTTTGTAGAATCTGATATCAGATTT  350

seq1  AAACCCTTTTCAAAATAGTCATTTACAACTACAAATTACCTCGAAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTTTCAAAATAGTCATTTACAACTACAAATTACCTCGAAGAAAT  400

seq1  GCTTCTGCTATATCCCACAACATACTGATGTATTCTTTCATTATCATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCTATATCCCACAACATACTGATGTATTCTTTCATTATCATCTA  450

seq1  ACTCAAAATATTTTAAAATTTCCCTTGTAATTTTTTTACTGGTTCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAATATTTTAAAATTTCCCTTGTAATTTTTTTACTGGTTCATTTT  500

seq1  TTTTTATATTTGATTTTTGATGCCTTCAGACATGTGTGCCATATGCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATTTGATTTTTGATGCCTTCAGACATGTGTGCCATATGCTGTA  550

seq1  AACATAGTCACCCTGTTACACCTCTGATCTCCTCTCCCACTCCTAAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTCACCCTGTTACACCTCTGATCTCCTCTCCCACTCCTAAAGAC  600

seq1  CCCTTTCTCCTTCTAAACCATCCCCTCTCTTGCTTTCCAGCCCTGTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCCTTCTAAACCATCCCCTCTCTTGCTTTCCAGCCCTGTAATG  650

seq1  GTGGCACTGCTCTTGTGTATTTACAATTACATGACATTGTCACATCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACTGCTCTTGTGTATTTACAATTACATGACATTGTCACATCCAGA  700

seq1  GGACAGCATTTCCTATGTCTCC-TCCCCACCCTCAGACCCCTAAAATCTC  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGACAGCATTTCCTATGTCTCCTTCCCCACCCTCAGACCCCTAAAATCTC  750

seq1  TCTGTCCCTTTTCCCATGGGGTTCTTGCTGGG-TCATCATTTAAATGTCT  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTGTCCCTTTTCCCATGGGGTTCTTGCTGGGTTCATCATTTAAATGTCT  800

seq1  TGCTCAATCTCCAAACTTGGGAGAATTATTTTAATATTATTATTAATTTG  848
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TGCTCAATCTCC-AACTTGGGAGAATTATTTT-ATATTATTATTAATTTG  848

seq1  TAATC-TAATCACATTTTCAGA-GAACAT--ATTTCAGCTTTTTAAAATG  894
      ||||| |||||||||||||||| ||||||   |||||||||||| |||||
seq2  TAATCTTAATCACATTTTCAGAGGAACATTATTTTCAGCTTTTT-AAATG  897

seq1  TATTAAAACTTGCTTTATGGGCCAGGAAATAGTCTACTTGGACAAGTCTA  944
      |||| |||||||||||||||| |  |||||||||||||| ||| ||||| 
seq2  TATT-AAACTTGCTTTATGGGGCCAGAAATAGTCTACTTTGAC-AGTCTT  945

seq1  TTGAATGTGTA-TTTCGCATT  964
      |||| ||| || |||||||||
seq2  TTGATTGTTTATTTTCGCATT  966

seq1: chr6_83208382_83209063
seq2: B6Ng01-284N20.g_357_1045

seq1  TTTACACAATATCTTTCCACAAATCCAGCCCTACAAAGGATAATAGATGG  50
      ||||||||||||||| |||||||||  | |||||||||||| ||||||||
seq2  TTTACACAATATCTTCCCACAAATCTGGTCCTACAAAGGATGATAGATGG  50

seq1  AAAACACCAACACAAGGAGGGAAACTACACCCTAGAAAAAGCAAGAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCAACACAAGGAGGGAAACTACACCCTAGAAAAAGCAAGAAAGT  100

seq1  AATCTTTCAAGAAACCCAAAAGAAAATAGCCACACAAACATAATTCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCAAGAAACCCAAAAGAAAATAGCCACACAAACATAATTCCACC  150

seq1  TCTAACAACAAAAATAACAGGAAGCAAAAAATCACTTTTCCTTAATATCT  200
      ||||||||||||||||||||||||  || |||||||||||||||||||||
seq2  TCTAACAACAAAAATAACAGGAAG-TAACAATCACTTTTCCTTAATATCT  199

seq1  CTTAACATCAATGGACTCAACTCCCCAATAAAAAGACATAGACTAACAGA  250
       || |||||||||||||||| |||||||||||||||||||||||| ||||
seq2  TTTGACATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAGCAGA  249

seq1  CTGGATACATAAACAGGACCCAGCATTTTGCTGCATACAGGAAACACACC  300
      |||| ||  ||| |||||||||||||||||||||| ||||||||||||||
seq2  CTGGCTATGTAATCAGGACCCAGCATTTTGCTGCACACAGGAAACACACC  299

seq1  TCAGTGACAAAGACAGACACTACCTCAGGGTAAAAGGTTGGAAAACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAGTGACAAAGACAGACACTACCTCAGGGTAAAAGGTTGGAAAACAGTT  349

seq1  TTCCAAGCAAATGGTCCCAAGAAACAAGCTGGAGTAGCCGTTCTAATATT  400
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TTCCAAGCAAATGGTCCTAAGAAACAGGCTGGAGTAGCCGTTCTAATATT  399

seq1  GAACAAAATTGACTCAATAGAAACAGATGTATAAAAGTTGGAGTCTT---  447
      ||||||||||||||||||||||||||||||||||||||||| ||| |   
seq2  GAACAAAATTGACTCAATAGAAACAGATGTATAAAAGTTGGGGTCATAGA  449

seq1  -AGATGCACTTAGCACTTAAAAGGAAAAGAGTGCATAGAAGCAAACACTT  496
       ||||||||||||||||||||| ||  ||| ||||||||| |||||||||
seq2  CAGATGCACTTAGCACTTAAAATGAGCAGAATGCATAGAAACAAACACTT  499

seq1  ATCTAGGACTAATTGGCTATTCTGGGTCTTTTGTTGTTCCATATCAGTTT  546
      |||||||||||| |||||||||||||||||||||||||||||||||  ||
seq2  ATCTAGGACTAACTGGCTATTCTGGGTCTTTTGTTGTTCCATATCAAATT  549

seq1  GAGGATTTTCTTTCTATTTATGTGAAGAATGAGGTGAGGATGTTGATTG-  595
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGGATTTTCTTTCTATTTATGTGAAGAATGAGGTGAGGATGTTGATTGT  599

seq1  TGATTTCATTGAATCAGTAAA-TTGTTTT-GGTAGGAA-GGTC-TTTTTT  641
      ||||||||||||||||||||| ||||||| |||||||| |||| ||||||
seq2  TGATTTCATTGAATCAGTAAATTTGTTTTGGGTAGGAAGGGTCTTTTTTT  649

seq1  TCACAGTGTTAATTCTACCAAGCTATATGCTTGGGAGGTGT  682
      ||||| ||||||||||||||| || || |||| |||||| |
seq2  TCACAATGTTAATTCTACCAATCTGTACGCTT-GGAGGTCT  689