BAC Information

Click to search

BAC

Clone NameB6Ng01-285H13
Chromosome6 (Build37)
Map Location 25,881,161 - 25,882,172
singlet/doubletsinglet
Overlap genenone
Upstream gene6332401O19Rik, LOC384358, Gpr37, Pot1a
Downstream geneEG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285H13.bB6Ng01-285H13.g
ACCGA083914GA083915
length1,2081,075
definitionB6Ng01-285H13.b B6Ng01-285H13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagaactttacacctcattgtgttcaattataatcatatttcaa
atagaaaaatattaaagagtttaatcatttttggcaaacccaagggcttt
cattttttatgaattccctcctgtggaagcttttccatggtatgtttatt
tacacatgtgctttataactgtccatctataggcaataaaactacaaaga
cagaaaagtagtctgcacaggggagagtgttctcacagaagctgacagct
tctgggacaggcgggagccacagagcttctgaggtagcgcccttttcggg
ctccagacatctgactacctccccgtacagaggacagttgtccacccggc
ccaggaggcttttgcctcaggatcagcaggagccatcttggttccaggac
tccacagaaaagtagtctgcacaagtgagagtgtgcacacagaagctacc
agcttctgtgacaggccaaggcaacacagcttctgggaaaggttctgttt
tggaacttcatcttcggctagaagggaggtcctaacgccagatatctgta
cacctttcctgtaagaggagagcttgcctgcagagagggaattgagcact
gaaactcagaggagagatctagtctcccaggtctgctgatagaggccagc
agcatcaccagtggaacaatctctaaacagagacaactataacaactaac
tccagagattaccagatggtgaaaggtaagtgtaagaatcttacaaaaag
aaaccaagaccactcaccatcatcagaacccagcactcccacttcgccca
gtccagggtaccataatacacccgaaaagctagacccggatttaaaagca
tatctcatgatgatggtagaggacatcaagaagcacctcaaaaactcact
taaagaaatacaggagaacactgctaaacaggtagaagacattaagagga
agcacaaaatcccttaaagaattgcaagaaaacacaaccaacaggtgatg
gaatttgatagaaccatcccagacctaaaagggaagtagacacattaaga
aaaacgcaaagtgaggcaatgcttggagaagaaagccttaggaaagaaat
cttggtaccatagatggtgtgagcatccagccaactgattccatgagatc
gcaaggagagaattctctcgaagttgcctaggaatgaattttcgctgatt
gcagtgac
gaattccaggacagccagggctacgcagagaaatgcaggaagcgggtgtg
gctgcatgggccaagatggtgccctggcccattgccaagtcctgtaaacc
ccacatgtttaccgccttgcccgaacatgcgcagtaaaactgcatgtgta
agctgcctgccaagttagactactcatgatccagacctgtcagcctatct
gtgaccgacctgagttcgtgcctggagcatgagtgagtctgattggatga
ggtggtgtggagcgagatgaggtcagttgccatgaggaaaggtgtagagc
acttgctgcaagaaggacagggatagaagcagctggggagagagctgtaa
gagaaaaagccacaagtaaagaagctgctgcgtaaacctgccttggtgtc
catgttgttcttgtctccgcaggtggcaaggactgcgaaaagtgatggcc
catatggggaactcatcactttggtcggcaatggtaagtaaagaaagtac
aggcctttgaaaattttagtaaacagcggtaaggagattttggtaagcaa
cgccgtttaaagaacgcacaggcttgtaaggttcccgggataaaagggat
gaagcattaaggttctcaggaatagagacaaagggaatttcagtaacaag
tgttcaactgcgactaaaatgaaagtaaaaatgttagccatctggaactt
ggtcaggacgtgcttgagggacgccagtggaaagtacaatgctgaaatag
aggaaggagctgtggtgcttgaggaggctgagagattgcttctcatgcta
gctgcggaaaacctaaacagcttaaacgacaaaccaaagataagaaagag
aagaaggaatctagctctgaagggtctactagtgacagcgatgggactga
tagtgacagtgacgtctgtagtcagatgtcctgttgggagtttgaaggca
tggtaggccacgcaaaccaatcagcctccttcggttgcccttctcatccc
cctaataaagatgaggggagacaaattgggaaagcatagacttcatgcca
aagttcttggaaaaatggtgccggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_25881161_25882172
seq2: B6Ng01-285H13.g_124_1144

seq1  CATGGGCCAAGATGGTGCCCTGGCCCATTGCCAAGTCCTGTAAACCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCAAGATGGTGCCCTGGCCCATTGCCAAGTCCTGTAAACCCCAC  50

seq1  ATGTTTACCGCCTTGCCCGAACATGCGCAGTAAAACTGCATGTGTAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACCGCCTTGCCCGAACATGCGCAGTAAAACTGCATGTGTAAGCT  100

seq1  GCCTGCCAAGTTAGACTACTCATGATCCAGACCTGTCAGCCTATCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAAGTTAGACTACTCATGATCCAGACCTGTCAGCCTATCTGTGA  150

seq1  CCGACCTGAGTTCGTGCCTGGAGCATGAGTGAGTCTGATTGGATGAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCTGAGTTCGTGCCTGGAGCATGAGTGAGTCTGATTGGATGAGGTG  200

seq1  GTGTGGAGCGAGATGAGGTCAGTTGCCATGAGGAAAGGTGTAGAGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGCGAGATGAGGTCAGTTGCCATGAGGAAAGGTGTAGAGCACTT  250

seq1  GCTGCAAGAAGGACAGGGATAGAAGCAGCTGGGGAGAGAGCTGTAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGAAGGACAGGGATAGAAGCAGCTGGGGAGAGAGCTGTAAGAGA  300

seq1  AAAAGCCACAAGTAAAGAAGCTGCTGCGTAAACCTGCCTTGGTGTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCACAAGTAAAGAAGCTGCTGCGTAAACCTGCCTTGGTGTCCATG  350

seq1  TTGTTCTTGTCTCCGCAGGTGGCAAGGACTGCGAAAAGTGATGGCCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTGTCTCCGCAGGTGGCAAGGACTGCGAAAAGTGATGGCCCATA  400

seq1  TGGGGAACTCATCACTTTGGTCGGCAATGGTAAGTAAAGAAAGTACAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACTCATCACTTTGGTCGGCAATGGTAAGTAAAGAAAGTACAGGC  450

seq1  CTTTGAAAATTTTAGTAAACAGCGGTAAGGAGATTTTGGTAAGCAACGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAATTTTAGTAAACAGCGGTAAGGAGATTTTGGTAAGCAACGCC  500

seq1  GTTTAAAGAACGCACAGGCTTGTAAGGTTCCCGGGATAAAAGGGATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGAACGCACAGGCTTGTAAGGTTCCCGGGATAAAAGGGATGAAG  550

seq1  CATTAAGGTTCTCAGGAATAGAGACAAAGGGAATTTCAGTAACAAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGGTTCTCAGGAATAGAGACAAAGGGAATTTCAGTAACAAGTGTT  600

seq1  CAACTGCGACTAAAATGAAAGTAAAAATGTTAGCCATCTGGAACTTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCGACTAAAATGAAAGTAAAAATGTTAGCCATCTGGAACTTGGTC  650

seq1  AGGACGTGCTTGAGGGACGCCAGTGGAAAGTACAATGCTGAAATAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGTGCTTGAGGGACGCCAGTGGAAAGTACAATGCTGAAATAGAGGA  700

seq1  AGGAGCTGTGGTGCTTGAGGAGGCTGAGGAGATTGCTTCTCAGGCTAGCT  750
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  AGGAGCTGTGGTGCTTGAGGAGGCTGA-GAGATTGCTTCTCATGCTAGCT  749

seq1  GCGGAAAACCTAAACAGCTTAAACGACAAACCAAAGATAAGAAAGAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAAACCTAAACAGCTTAAACGACAAACCAAAGATAAGAAAGAGAAG  799

seq1  AAGGAATCTAGCTCTGAAGGGTCTACTAGTGACAGCGATGGGACTGATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATCTAGCTCTGAAGGGTCTACTAGTGACAGCGATGGGACTGATAG  849

seq1  TGACAGTGACGTCTGTAGTCAGATGTCCTGTT-GGAGTTTG-AGGCATGG  898
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TGACAGTGACGTCTGTAGTCAGATGTCCTGTTGGGAGTTTGAAGGCATGG  899

seq1  TAGGCCACGCAAACC-ATCAGC--CCCTCCGTTG-CCTTCTCATCCCCCC  944
      ||||||||||||||| ||||||  || || |||| |||||||||||||| 
seq2  TAGGCCACGCAAACCAATCAGCCTCCTTCGGTTGCCCTTCTCATCCCCCT  949

seq1  TATAAAGATGA-GGGAGACAAAATGGGAAAGCATAGACTTCATGCAAAAG  993
       |||||||||| |||||||||| |||||||||||||||||||||| ||||
seq2  AATAAAGATGAGGGGAGACAAATTGGGAAAGCATAGACTTCATGCCAAAG  999

seq1  T--CTGGAAAAAT-GTGCCCGC  1012
      |   ||||||||| ||||| ||
seq2  TTCTTGGAAAAATGGTGCCGGC  1021