BAC Information

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BAC

Clone NameB6Ng01-285M07
Chromosome17 (Build37)6 (Build37)
Map Location 42,700,545 - 42,701,33738,161,173 - 38,161,359
singlet/doubletsingletsinglet
Overlap geneOpn5
Upstream geneLOC627626
Downstream geneGpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285M07.bB6Ng01-285M07.g
ACCGA084133GA084134
length803500
definitionB6Ng01-285M07.b B6Ng01-285M07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,700,545 - 42,701,337)(38,161,173 - 38,161,359)
sequence
gaattcactgaatttcaagacgctttgatctgtttccttcctgggaaatt
cctgtttttacttgtcctctaggcagactcatgaaagtagaaaggctgtg
tgcacttacaagctgcataattaacacaaaatagctcattacactattta
cactattcctcctcttttatgcaggtttttaaaattccatgaacatctta
gaaaacacgttaaataaaccagaaaagagtgtgtgtacatacagacagac
tgtaactttccttagtgtattacattttatttatttagtttgtatgcttg
agatggagtaggggtggcacatatatctcacggcatacaagtagagggca
gaggaaaatgtgcctgagtcagttctctccttccacaggatggatcctga
gaatcaaactcagctgagcaggcttggttgtaggcattagcctctgagcc
atcccaccagccacagacttttaatatatacaacaaatctaagagaaatg
gctactgccctagaattcctgctcattcctgttcgttcctggaatggtta
gtcaagtaaagataaatgacttgcttctttaataaactgggagggggggt
ggtgaacccttctcctggtttaaaaccaaaaagaagtttatccatgctga
caacatagtctatagagggtatgtggaggggcggggaagcatcactagtc
atgatttgaaccttttctgtgaaagtggttttatatttataagtggcatc
ttcaacttaagtcttctctcttgcctgccctgccaaatacaattatctat
agt

cagggagtggtcctgaccaaagcaattaaagcttgctttagatttggctc
aaaattgtggggctggtttctctgcaggtgaacagtgcgcatgcgtttag
aagtcaatgtcagctttcttcttcaatcatttctccaccttatttgaaga
caggctctctgttggttttgtctaggctccgccccacagttacttggcaa
cagccaggtatgtctgactcactataaaaggggctgcttgccccctcctc
tctctcttgctcttgctcatttctctttctctttaccctccctctcccca
ttcctctcccccctctctatgtgctcatggcccacctctactcctctacg
ctctctctccctctttctcactctctgcctttctctcaactccccttgcc
atgccctgaataaactctattctatactgtactgtcatgtggctggtacc
tcagggggaagggatgcctcatcatggactggcagaggcaccccctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42700545_42701337
seq2: B6Ng01-285M07.b_48_850

seq1  GAATTCACTGAATTTCAAGACGCTTTGATCTGTTTCCTTCCTGGGAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAATTTCAAGACGCTTTGATCTGTTTCCTTCCTGGGAAATT  50

seq1  CCTGTTTTTACTTGTCCTCTAGGCAGACTCATGAAAGTAGAAAGGCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTTACTTGTCCTCTAGGCAGACTCATGAAAGTAGAAAGGCTGTG  100

seq1  TGCACTTACAAGCTGCATAATTAACACAAAATAGCTCATTACACTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTACAAGCTGCATAATTAACACAAAATAGCTCATTACACTATTTA  150

seq1  CACTATTCCTCCTCTTTTATGCAGGTTTTTAAAATTCCATGAACATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTCCTCCTCTTTTATGCAGGTTTTTAAAATTCCATGAACATCTTA  200

seq1  GAAAACACGTTAAATAAACCAGAAAAGAGTGTGTGTACATACAGACAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACGTTAAATAAACCAGAAAAGAGTGTGTGTACATACAGACAGAC  250

seq1  TGTAACTTTCCTTAGTGTATTACATTTTATTTATTTAGTTTGTATGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTTCCTTAGTGTATTACATTTTATTTATTTAGTTTGTATGCTTG  300

seq1  AGATGGAGTAGGGGTGGCACATATATCTCACGGCATACAAGTAGAGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGTAGGGGTGGCACATATATCTCACGGCATACAAGTAGAGGGCA  350

seq1  GAGGAAAATGTGCCTGAGTCAGTTCTCTCCTTCCACAGGATGGATCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATGTGCCTGAGTCAGTTCTCTCCTTCCACAGGATGGATCCTGA  400

seq1  GAATCAAACTCAGCTGAGCAGGCTTGGTTGTAGGCATTAGCCTCTGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAACTCAGCTGAGCAGGCTTGGTTGTAGGCATTAGCCTCTGAGCC  450

seq1  ATCCCACCAGCCACAGACTTTTAATATATACAACAAATCTAAGAGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCAGCCACAGACTTTTAATATATACAACAAATCTAAGAGAAATG  500

seq1  GCTACTGCCCTAGAATTCCTGCTCATTCCTGTTCGTTCCTGGAATGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGCCCTAGAATTCCTGCTCATTCCTGTTCGTTCCTGGAATGGTTA  550

seq1  GTCAAGTAAAGATAAATGACTTGCTTCTTTAATAAACTGGGAGGGGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTAAAGATAAATGACTTGCTTCTTTAATAAACTGGGAGGGGGGGT  600

seq1  GGTGAACCCTTCTCCTGGTTTAAAACC-AAAAGAAG-TTATCCATGCTGA  648
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GGTGAACCCTTCTCCTGGTTTAAAACCAAAAAGAAGTTTATCCATGCTGA  650

seq1  CAACATAGTCTATAGAGGGTATGTGGAGGG--CGGGAAGCATCACTAGTC  696
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  CAACATAGTCTATAGAGGGTATGTGGAGGGGCGGGGAAGCATCACTAGTC  700

seq1  ATGATTTGAACC-TTTCTGTGAAAGTGG-TTTATA-TTATAAGTGGCATC  743
      |||||||||||| ||||||||||||||| |||||| ||||||||||||||
seq2  ATGATTTGAACCTTTTCTGTGAAAGTGGTTTTATATTTATAAGTGGCATC  750

seq1  TTCAACTTAAGTCTTCTCTCTTGCCTG-CCTGTCAAATACAGT--ACTAT  790
      ||||||||||||||||||||||||||| |||| |||||||| |   ||||
seq2  TTCAACTTAAGTCTTCTCTCTTGCCTGCCCTGCCAAATACAATTATCTAT  800

seq1  AGT  793
      |||
seq2  AGT  803


seq1: chr6_38161173_38161359
seq2: B6Ng01-285M07.g_382_503 (reverse)

seq1  AGTATAGAATAGAGTTTATTCAGGGCATGGGGAGGGGAGTTAAGAGGGTA  50
      ||||||||||||||||||||||||||||||  ||||||||| ||||    
seq2  AGTATAGAATAGAGTTTATTCAGGGCATGGCAAGGGGAGTTGAGAGAAAG  50

seq1  GTAGAGGTGGGGGGAGGGGGAAAGAGAGGGGAGGGGAGGGGAGGGGAGGG  100
      | |||        ||| | |||||||                        
seq2  GCAGA--------GAGTGAGAAAGAG------------------------  68

seq1  GAGGGGAGGGGAGGGGAGGGGAGGGAAGGGAAGGGAAGGGAAATAGAGTA  150
                       || ||| ||  |              ||||| |
seq2  -----------------GGAGAGAGAGCG--------------TAGAGGA  87

seq1  ATAGAGGCCAGCCATGAGCATGTGGAGAGAGGGGGGA  187
       ||||||   ||||||||||  |  ||||||||||||
seq2  GTAGAGGTGGGCCATGAGCACAT--AGAGAGGGGGGA  122


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