BAC Information

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BAC

Clone NameB6Ng01-285P12
Chromosome6 (Build37)
Map Location 93,390,202 - 93,487,225
singlet/doubletdoublet
Overlap genenone
Upstream genePrickle2, LOC545866, A730049H05Rik, LOC384461, LOC100043253
Downstream geneLOC665831, Magi1, LOC100043262, LOC665856, Slc25a26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285P12.bB6Ng01-285P12.g
ACCGA084283GA084284
length1,1651,094
definitionB6Ng01-285P12.b B6Ng01-285P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,390,202 - 93,391,359)(93,486,164 - 93,487,225)
sequence
gaattcagctggacagttcctgacctattcctcacaaaaacaaatagcaa
aataaataaaatcaaccatccttaaaaggtaaccagtctagcaattctct
tctgtcttgaaagatggacagggtgacttgggcaaagcaatctattgtca
atataaggtttgtgtgcctttcacagggctgaatacttaccttgaaatga
caaggtagagagaaatggtgacaaggtgcagagacacacagggagagaga
gagaagttgatctattagccctcagaacagaaatgctcaagatagagtat
ggctttcgaagcctatagtttagacatctacatgacataactacattcgg
ttttcctccctgtctctactctgtcttccattctgttcatgtgatcagta
ccacaaaaatcaaggctctgatataaccaggtgaagagaaagcggatgtg
aagttttattgtgcctcattggattccactgaacaattcattcattattt
ctctcacagagttgctttctgatgacaatcactgatgatagcaccctggt
ttggtgacatcatttcacaagcatatgtgtctttatagtctatttctcca
aaagcaaccaataaaatcatgattactaattccaagaagcatgaagagcc
atcttgggctttcttctagtctaataagagaggtcacgagctgtgtctcc
taagctataaaggaaagtctccaaggaagcagaagaaacagcagcctctc
aagcaagctgcagcctccactgcaaagtacacatatctcagtgcccttta
gggtcctcatgtcatttcaatctcttcttctatgtgtacaagaatagaga
cgattttgggcaagtctctcctataggctgggcaaatatgaaaacataca
aacttcccaatgccaagttcatcacagcccagtgagacaggccaccagca
tattgcagaataacataaatgtagactgagcaggctggaacttttagccc
aacattatcttaatttggaacaaataccatctatccagactctggtggag
tttaaatcttggttcattcaggttattcgatactattgctcaaggcaagt
cacttcaaacttttccttgctgtttttctcttgaccataaatgcaatgac
atgaattttatcatc

gaattcactgctccattatggctttctccttgggaatttctgtaaagcag
atattttatttgccttgtagtttcatagttacatatgatgggcgctaatg
gactttgcagtgcaccaacctctctccttccccatcaaatcacaggaaat
agctaacacgatataccctaaggttttacaatgttcttgcttcttctcta
acattattataggatctgtttctggtgaccaggaaagaaaagaatgattt
ccccaatactgtttaacagcacagatattttaaaaggctgagcacattgt
gcttaatgttggccatgctttaactgatcctttgaaatggtggtggtggt
gggaatatggctgaaaaattaaactcagtttactttagaatcatattatc
ccagacaggccacgctagcagtaagacctgcttgtctctagctgtgtctc
tgggaggacagacttctgtcctcttttagggaacatatttccttggtttc
cctactccttctagataaatttttataccacagtgattagaaactcatct
ttcccaggtgactgtggatcagagtggatgcggcatgcttgaccacttgg
agaataataggtggttgtggagacaggcacacgttctagagaaaaaaatg
ggggggggcaggcagttgaaagcatttctgaatccacccatctattcatc
tacctgggggtcagaaataaacaacgaaaagcaaaccaacacatacaggg
tcttcctagaagcttactatcagtaaggcaggacactgagctctatgaga
tccaaggatcacagggcagaaatattggccattaaagagaacatacaatt
ctttttaagttttattataaaaaataacccattttatgttttctcacacc
atatacatatagataattataaagttgggaattgcttaagttatgaacag
gaaaggtataacaaagaaaaaaggatgaattaatttcagagaaatgaagc
tcattttctatggctttggaaaactaaggaatggattttctctggaaggt
ggtgtttgtaatattgccttcaaccgatgagagctaatgggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93390202_93391359
seq2: B6Ng01-285P12.b_48_1212

seq1  GAATTCAGCTGGACAGTTCCTGACCTATTCCTCACAAAAACAAATAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGGACAGTTCCTGACCTATTCCTCACAAAAACAAATAGCAA  50

seq1  AATAAATAAAATCAACCATCCTTAAAAGGTAACCAGTCTAGCAATTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAAATCAACCATCCTTAAAAGGTAACCAGTCTAGCAATTCTCT  100

seq1  TCTGTCTTGAAAGATGGACAGGGTGACTTGGGCAAAGCAATCTATTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGAAAGATGGACAGGGTGACTTGGGCAAAGCAATCTATTGTCA  150

seq1  ATATAAGGTTTGTGTGCCTTTCACAGGGCTGAATACTTACCTTGAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGTTTGTGTGCCTTTCACAGGGCTGAATACTTACCTTGAAATGA  200

seq1  CAAGGTAGAGAGAAATGGTGACAAGGTGCAGAGACACACAGGGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAGAGAGAAATGGTGACAAGGTGCAGAGACACACAGGGAGAGAGA  250

seq1  GAGAAGTTGATCTATTAGCCCTCAGAACAGAAATGCTCAAGATAGAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTGATCTATTAGCCCTCAGAACAGAAATGCTCAAGATAGAGTAT  300

seq1  GGCTTTCGAAGCCTATAGTTTAGACATCTACATGACATAACTACATTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCGAAGCCTATAGTTTAGACATCTACATGACATAACTACATTCGG  350

seq1  TTTTCCTCCCTGTCTCTACTCTGTCTTCCATTCTGTTCATGTGATCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCCCTGTCTCTACTCTGTCTTCCATTCTGTTCATGTGATCAGTA  400

seq1  CCACAAAAATCAAGGCTCTGATATAACCAGGTGAAGAGAAAGCGGATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAAATCAAGGCTCTGATATAACCAGGTGAAGAGAAAGCGGATGTG  450

seq1  AAGTTTTATTGTGCCTCATTGGATTCCACTGAACAATTCATTCATTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTATTGTGCCTCATTGGATTCCACTGAACAATTCATTCATTATTT  500

seq1  CTCTCACAGAGTTGCTTTCTGATGACAATCACTGATGATAGCACCCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACAGAGTTGCTTTCTGATGACAATCACTGATGATAGCACCCTGGT  550

seq1  TTGGTGACATCATTTCACAAGCATATGTGTCTTTATAGTCTATTTCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACATCATTTCACAAGCATATGTGTCTTTATAGTCTATTTCTCCA  600

seq1  AAAGCAACCAATAAAATCATGATTACTAATTCCAAGAAGCATGAAGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACCAATAAAATCATGATTACTAATTCCAAGAAGCATGAAGAGCC  650

seq1  ATCTTGGGCTTTCTTCTAGTCTAATAAGAGAGGTCACGAGCTGTGTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGGCTTTCTTCTAGTCTAATAAGAGAGGTCACGAGCTGTGTCTCC  700

seq1  TAAGCTATAAAGGAAAGTCTCCAAGGAAGCAGAAGAAACAGCAGCCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTATAAAGGAAAGTCTCCAAGGAAGCAGAAGAAACAGCAGCCTCTC  750

seq1  AAGCAAGCTGCAGCCTCCACTGCAAAGTACACATATCTCAGTGCCCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCTGCAGCCTCCACTGCAAAGTACACATATCTCAGTGCCCTTTA  800

seq1  GGGTCCTCATGTCATTTCAATCTCTTCTTCTATGTGTACAAGAATAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTCATGTCATTTCAATCTCTTCTTCTATGTGTACAAGAATAGAGA  850

seq1  CGATTTTGGGCAAGTCTCTCCTATAGGCTGGGCAAATATGAAAACATACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTGGGCAAGTCTCTCCTATAGGCTGGGCAAATATGAAAACATACA  900

seq1  AACTTCCCAATGCCAAGTTCATCACAGCCCAGTGAGACAGGCCACCAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCAATGCCAAGTTCATCACAGCCCAGTGAGACAGGCCACCAGCA  950

seq1  TATTGCAGAATAACATAAATGTAGACTGAGCAGGCTGGAACTTTTAG-CC  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATTGCAGAATAACATAAATGTAGACTGAGCAGGCTGGAACTTTTAGCCC  1000

seq1  AACA-TATCTTAATTTTGAACAAATACCATCTATCCAGACTCTG--TGAG  1046
      |||| ||||||||||| |||||||||||||||||||||||||||   |||
seq2  AACATTATCTTAATTTGGAACAAATACCATCTATCCAGACTCTGGTGGAG  1050

seq1  TTTAAATCTTGGTTCCATCA-GTTA-TCGATACTATTGCTTCAGGCAAGT  1094
      |||||||||||||||  ||| |||| ||||||||||||||  ||||||||
seq2  TTTAAATCTTGGTTCATTCAGGTTATTCGATACTATTGCTCAAGGCAAGT  1100

seq1  CACT--CAACTTTCCTTTGCCGTGTTTTCTC-TGACCATAAAATGCAATT  1141
      ||||   |||||| | |||| || ||||||| ||||||| |||||||| |
seq2  CACTTCAAACTTTTCCTTGCTGT-TTTTCTCTTGACCAT-AAATGCAA-T  1147

seq1  GACATG-ATTTTATCATC  1158
      |||||| |||||||||||
seq2  GACATGAATTTTATCATC  1165


seq1: chr6_93486164_93487225
seq2: B6Ng01-285P12.g_72_1165 (reverse)

seq1  GGGCGCCATTAG--CTCATCGTTT--AAGCATTATT-CCAACACCACCT-  44
      |||| |||||||  ||||||| ||  | ||| |||| | |||||||||| 
seq2  GGGC-CCATTAGCTCTCATCGGTTGAAGGCAATATTACAAACACCACCTT  49

seq1  -CAGAGAAA--TCATTCC-TAGTTTTCC-AAGCCATAGAAA--TAGCTTC  87
       ||||||||   |||||| ||||||||| ||||||||||||   ||||||
seq2  CCAGAGAAAATCCATTCCTTAGTTTTCCAAAGCCATAGAAAATGAGCTTC  99

seq1  -TTTCTCTGAAA-TACTTCATCCTTTT---CTTGTTATACCTTTCCTG-T  131
       ||||||||||| || |||||||||||    ||||||||||||||||| |
seq2  ATTTCTCTGAAATTAATTCATCCTTTTTTCTTTGTTATACCTTTCCTGTT  149

seq1  CAT-ACTT-AGC-ACTCCCAACTTTAT-ATTATCTATATGTATAT-GTGT  176
      ||| |||| ||| | |||||||||||| ||||||||||||||||| ||||
seq2  CATAACTTAAGCAATTCCCAACTTTATAATTATCTATATGTATATGGTGT  199

seq1  GAG-AAACATAAA--TGGTTA-TTTTTATTAT-AAACT--AAAAG-ATTG  218
      ||| |||||||||   ||||| ||||||| || |||||  ||||| ||||
seq2  GAGAAAACATAAAATGGGTTATTTTTTATAATAAAACTTAAAAAGAATTG  249

seq1  TATGTTCTCTTTAATGG-CAATATTTCTGCCCTGTGATCCTTGGATCTCA  267
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATGTTCTCTTTAATGGCCAATATTTCTGCCCTGTGATCCTTGGATCTCA  299

seq1  TAGAGCTCAGTGTCCTGCCTTACTGATAGTAAGCTTCTAGGAAGACCCTG  317
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCAGTGTCCTGCCTTACTGATAGTAAGCTTCTAGGAAGACCCTG  349

seq1  TATGTGTTGGTTTGCTTTTCGTTGTTTATTTCTGACCCCCAGGTAGATGA  367
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTGGTTTGCTTTTCGTTGTTTATTTCTGACCCCCAGGTAGATGA  399

seq1  ATAGATGGGTGGATTCAGAAATGCTTTCAACTGCCTGCCCCCCCCCATTT  417
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGGTGGATTCAGAAATGCTTTCAACTGCCTGCCCCCCCCCATTT  449

seq1  TTTTCTCTAGAACGTGTGCCTGTCTCCACAACCACCTATTATTCTCCAAG  467
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTAGAACGTGTGCCTGTCTCCACAACCACCTATTATTCTCCAAG  499

seq1  TGGTCAAGCATGCCGCATCCACTCTGATCCACAGTCACCTGGGAAAGATG  517
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGCATGCCGCATCCACTCTGATCCACAGTCACCTGGGAAAGATG  549

seq1  AGTTTCTAATCACTGTGGTATAAAAATTTATCTAGAAGGAGTAGGGAAAC  567
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAATCACTGTGGTATAAAAATTTATCTAGAAGGAGTAGGGAAAC  599

seq1  CAAGGAAATATGTTCCCTAAAAGAGGACAGAAGTCTGTCCTCCCAGAGAC  617
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAATATGTTCCCTAAAAGAGGACAGAAGTCTGTCCTCCCAGAGAC  649

seq1  ACAGCTAGAGACAAGCAGGTCTTACTGCTAGCGTGGCCTGTCTGGGATAA  667
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAGAGACAAGCAGGTCTTACTGCTAGCGTGGCCTGTCTGGGATAA  699

seq1  TATGATTCTAAAGTAAACTGAGTTTAATTTTTCAGCCATATTCCCACCAC  717
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCTAAAGTAAACTGAGTTTAATTTTTCAGCCATATTCCCACCAC  749

seq1  CACCACCATTTCAAAGGATCAGTTAAAGCATGGCCAACATTAAGCACAAT  767
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCATTTCAAAGGATCAGTTAAAGCATGGCCAACATTAAGCACAAT  799

seq1  GTGCTCAGCCTTTTAAAATATCTGTGCTGTTAAACAGTATTGGGGAAATC  817
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGCCTTTTAAAATATCTGTGCTGTTAAACAGTATTGGGGAAATC  849

seq1  ATTCTTTTCTTTCCTGGTCACCAGAAACAGATCCTATAATAATGTTAGAG  867
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTTTCCTGGTCACCAGAAACAGATCCTATAATAATGTTAGAG  899

seq1  AAGAAGCAAGAACATTGTAAAACCTTAGGGTATATCGTGTTAGCTATTTC  917
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAAGAACATTGTAAAACCTTAGGGTATATCGTGTTAGCTATTTC  949

seq1  CTGTGATTTGATGGGGAAGGAGAGAGGTTGGTGCACTGCAAAGTCCATTA  967
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTTGATGGGGAAGGAGAGAGGTTGGTGCACTGCAAAGTCCATTA  999

seq1  GCGCCCATCATATGTAACTATGAAACTACAAGGCAAATAAAATATCTGCT  1017
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCATCATATGTAACTATGAAACTACAAGGCAAATAAAATATCTGCT  1049

seq1  TTACAGAAATTCCCAAGGAGAAAGCCATAATGGAGCAGTGAATTC  1062
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAATTCCCAAGGAGAAAGCCATAATGGAGCAGTGAATTC  1094


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