BAC Information

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BAC

Clone NameB6Ng01-286L19
Chromosome6 (Build37)
Map Location 62,499,231 - 62,597,991
singlet/doubletdoublet
Overlap genenone
Upstream geneC130092O11Rik
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286L19.bB6Ng01-286L19.g
ACCGA084853GA084854
length1,1731,156
definitionB6Ng01-286L19.b B6Ng01-286L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,596,833 - 62,597,991)(62,499,231 - 62,500,400)
sequence
gaattctttatttagtaaatacaaacagaattctacaatgtgttttgtgg
acagtctatttggctgttcacatttggaggaagtgattgttttcattgct
gtgccctagcctatcattgttccaactgtactaaaataatagaacacaat
gcttccaagaatagggaggtacagtcaccctccccatcttcctttgttgc
agtatagaatctctcacatcctatctctgttcttgatataaagatgctta
tggatagtaatgtggtgacacaatgatgatttaaagtacattccatcata
aactaatgagatattactttctatataataactataggcttatttatttt
ttaaactcaataacattctcacaaaacaaatccaagaatacatcaaaaca
atcatccatcatggtcaagtaggctccatcccgggaatgcagggatgggt
caatataaggaaatccatcaaaaatataataatctacaatataaacaaac
tcaaaggaaaaaaaaccctcatggttagctcattagatactgagaaagca
tttgacacaatacaacatccattcatgataaaactcttggaaagatcaag
aattcaaggctcatacctaaacataataaaagcaatatacagcaaaccag
tagccaatatcaaacttaatgaagagaaagttgatgcaattccactaaaa
tcagggaatagacaaggatgcctacctattcaatactttgccatagcaaa
tagacaacaaaaggagatcaaaggaatacaaattggaaaggaagatgtca
aaatatcactatttgcagatgatatgacagtatatataagtgaccccaaa
aattctaccagagaactcctaaacctgataaacaacttcaggaaaggaaa
taaacaacttctggttagaaattccagggatctacctgtttatgtcttcc
cagtcctgggctttcaatttatgctactaaattgagccattcttttcatt
tatgactatttattcattgtggtgattacagtcttaacagaataagaccc
acaatttttttttgtatttttttttttttagaatattttttcttttattt
agatttataatgtttattcttccttccttacgttcctctccggaaattcc
cttatgccgtctgggctctccct

gaattcacacacctatggtcacttgatctttgacacaggagctaaaacca
tccattggaaagaagaccgcatcttcaataatatggtgtttcttaatgaa
tattaatactcttacaatgtcactactgaatttcagttgctcttatttat
gtaaataacagctattcgaaatatccagtgtcttcttaaaccattcatga
taatgaaatggctgattatgatttagattaaccaagataagaagctgtga
ttaaataattgtgctgcaaatacactgtataagtcagatattgggggtta
agtgtggcaataagaatctatggaaggtacacccaaattgtagacagtac
tataaatataatcaggccttagatatatgacacagaataccattcaaaac
tttatagtactgcttctaaaatgagaacaatttgaagatatcaagattgt
aaaatgtatttcagattaaaaaagttgcaagctactgctactaccaaaag
agacataaacaattgaaagacagtatagaaatgatgtttgagctctgatg
aaagcttttgaaatggaaccagttttaagaggtagatctctatagttctg
tttccttagttattaaacacttatgtgataagctataatatagggtgata
gaatctgacacccaggaaaagaactgccaattgataatattcctaacagt
agataagggttgccaatctgtttgtctcattagtgtttcattttgttttg
tttcaactttggcactgctctacatcattgagaactattcatcaagagca
accatattgtattaaatttatagagaattgtttcatcaattttatcaaac
agcatacgcgatatattttttgagtcaatagtcacaccaaagattctggt
aaaagatacctggtgaacattttgggagaatatactgtaccctcctgact
gaaaatatgaatgcattattcaactgaattcttcaatatttctagtttat
gtaagaagatataaatggactctgtgcaaactaaagtagaattaagcacc
agaaagagaaaaatatgggagagtttggttgtgtttattggcagagaaca
ggctaatagggtaaggtcacatattatttaatttaggttaacccaaatat
ctactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_62596833_62597991
seq2: B6Ng01-286L19.b_44_1216 (reverse)

seq1  AGGGAGAGCCCAGAGGGGAT-AGGGGATTTTCGGAGAGGAAAGT-AGGAA  48
      |||||||||||||| || || |||| |||| |||||||||| || |||||
seq2  AGGGAGAGCCCAGACGGCATAAGGGAATTTCCGGAGAGGAACGTAAGGAA  50

seq1  AGGAGA--TAACATTATAAATCTAAAT-AAAGAAAATATCT-----AAAA  90
       | |||   |||||||||||||||||| |||||||| || |     ||||
seq2  GGAAGAATAAACATTATAAATCTAAATAAAAGAAAAAATATTCTAAAAAA  100

seq1  AAAAAAATACAAAAAAAA--TGTGGGTCTTA-TCTGTTAAGACTGTAATC  137
      ||||||||||||||||||  ||||||||||| ||||||||||||||||||
seq2  AAAAAAATACAAAAAAAAATTGTGGGTCTTATTCTGTTAAGACTGTAATC  150

seq1  ACCACAATGA--TAATAGTCATAAATGAAAAGAATGGCTCAATTTAGTAG  185
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  ACCACAATGAATAAATAGTCATAAATGAAAAGAATGGCTCAATTTAGTAG  200

seq1  CATAAATTGAAAGCCCAGGACTGGGAAGACATAAACAGGTAGATCCCTGG  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTGAAAGCCCAGGACTGGGAAGACATAAACAGGTAGATCCCTGG  250

seq1  AATTTTCTAACCAGAAGTTGTTTATTTCCTTCCCTGAAGTTGTTTATCAG  285
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AA-TTTCTAACCAGAAGTTGTTTATTTCCTTTCCTGAAGTTGTTTATCAG  299

seq1  GTTTAGGAGTTCTCTGGTAGAATTTTTGGGGTCACTTATATATACTGTCA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGAGTTCTCTGGTAGAATTTTTGGGGTCACTTATATATACTGTCA  349

seq1  TATCATCTGCAAATAGTGATATTTTGACATCTTCCTTTCCAATTTGTATT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTGCAAATAGTGATATTTTGACATCTTCCTTTCCAATTTGTATT  399

seq1  CCTTTGATCTCCTTTTGTTGTCTATTTGCTATGGCAAAGTATTGAATAGG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCTCCTTTTGTTGTCTATTTGCTATGGCAAAGTATTGAATAGG  449

seq1  TAGGCATCCTTGTCTATTCCCTGATTTTAGTGGAATTGCATCAACTTTCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCCTTGTCTATTCCCTGATTTTAGTGGAATTGCATCAACTTTCT  499

seq1  CTTCATTAAGTTTGATATTGGCTACTGGTTTGCTGTATATTGCTTTTATT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTAAGTTTGATATTGGCTACTGGTTTGCTGTATATTGCTTTTATT  549

seq1  ATGTTTAGGTATGAGCCTTGAATTCTTGATCTTTCCAAGAGTTTTATCAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGGTATGAGCCTTGAATTCTTGATCTTTCCAAGAGTTTTATCAT  599

seq1  GAATGGATGTTGTATTGTGTCAAATGCTTTCTCAGTATCTAATGAGCTAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATGTTGTATTGTGTCAAATGCTTTCTCAGTATCTAATGAGCTAA  649

seq1  CCATGAGGGTTTTTTTTCCTTTGAGTTTGTTTATATTGTAGATTATTATA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGGTTTTTTTTCCTTTGAGTTTGTTTATATTGTAGATTATTATA  699

seq1  TTTTTGATGGATTTCCTTATATTGACCCATCCCTGCATTCCCGGGATGGA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATGGATTTCCTTATATTGACCCATCCCTGCATTCCCGGGATGGA  749

seq1  GCCTACTTGACCATGATGGATGATTGTTTTGATGTATTCTTGGATTTGTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTTGACCATGATGGATGATTGTTTTGATGTATTCTTGGATTTGTT  799

seq1  TTGTGAGAATGTTATTGAGTTTAAAAAATAAATAAGCCTATAGTTATTAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAATGTTATTGAGTTTAAAAAATAAATAAGCCTATAGTTATTAT  849

seq1  ATAGAAAGTAATATCTCATTAGTTTATGATGGAATGTACTTTAAATCATC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGTAATATCTCATTAGTTTATGATGGAATGTACTTTAAATCATC  899

seq1  ATTGTGTCACCACATTACTATCCATAAGCATCTTTATATCAAGAACAGAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCACCACATTACTATCCATAAGCATCTTTATATCAAGAACAGAG  949

seq1  ATAGGATGTGAGAGATTCTATACTGCAACAAAGGAAGATGGGGAGGGTGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGTGAGAGATTCTATACTGCAACAAAGGAAGATGGGGAGGGTGA  999

seq1  CTGTACCTCCCTATTCTTGGAAGCATTGTGTTCTATTATTTTAGTACAGT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTCCCTATTCTTGGAAGCATTGTGTTCTATTATTTTAGTACAGT  1049

seq1  TGGAACAATGATAGGCTAGGGCACAGCAATGAAAACAATCACTTCCTCCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAATGATAGGCTAGGGCACAGCAATGAAAACAATCACTTCCTCCA  1099

seq1  AATGTGAACAGCCAAATAGACTGTCCACAAAACACATTGTAGAATTCTGT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAACAGCCAAATAGACTGTCCACAAAACACATTGTAGAATTCTGT  1149

seq1  TTGTATTTACTAAATAAAGAATTC  1159
      ||||||||||||||||||||||||
seq2  TTGTATTTACTAAATAAAGAATTC  1173


seq1: chr6_62499231_62500400
seq2: B6Ng01-286L19.g_69_1224

seq1  GAATTCACACACCTATGGTCACTTGATCTTTGACACAGGAGCTAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACCTATGGTCACTTGATCTTTGACACAGGAGCTAAAACCA  50

seq1  TCCATTGGAAAGAAGACCGCATCTTCAATAATATGGTGTTTCTTAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGAAAGAAGACCGCATCTTCAATAATATGGTGTTTCTTAATGAA  100

seq1  TATTAATACTCTTACAATGTCACTACTGAATTTCAGTTGCTCTTATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATACTCTTACAATGTCACTACTGAATTTCAGTTGCTCTTATTTAT  150

seq1  GTAAATAACAGCTATTCGAAATATCCAGTGTCTTCTTAAACCATTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAACAGCTATTCGAAATATCCAGTGTCTTCTTAAACCATTCATGA  200

seq1  TAATGAAATGGCTGATTATGATTTAGATTAACCAAGATAAGAAGCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAATGGCTGATTATGATTTAGATTAACCAAGATAAGAAGCTGTGA  250

seq1  TTAAATAATTGTGCTGCAAATACACTGTATAAGTCAGATATTGGGGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATTGTGCTGCAAATACACTGTATAAGTCAGATATTGGGGGTTA  300

seq1  AGTGTGGCAATAAGAATCTATGGAAGGTACACCCAAATTGTAGACAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGCAATAAGAATCTATGGAAGGTACACCCAAATTGTAGACAGTAC  350

seq1  TATAAATATAATCAGGCCTTAGATATATGACACAGAATACCATTCAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATAATCAGGCCTTAGATATATGACACAGAATACCATTCAAAAC  400

seq1  TTTATAGTACTGCTTCTAAAATGAGAACAATTTGAAGATATCAAGATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTACTGCTTCTAAAATGAGAACAATTTGAAGATATCAAGATTGT  450

seq1  AAAATGTATTTCAGATTAAAAAAGTTGCAAGCTACTGCTACTACCAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATTTCAGATTAAAAAAGTTGCAAGCTACTGCTACTACCAAAAG  500

seq1  AGACATAAACAATTGAAAGACAGTATAGAAATGATGTTTGAGCTCTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAACAATTGAAAGACAGTATAGAAATGATGTTTGAGCTCTGATG  550

seq1  AAAGCTTTTGAAATGGAACCAGTTTTAAGAGGTAGATCTCTATAGTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTGAAATGGAACCAGTTTTAAGAGGTAGATCTCTATAGTTCTG  600

seq1  TTTCCTTAGTTATTAAACACTTATGTGATAAGCTATAATATAGGGTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAGTTATTAAACACTTATGTGATAAGCTATAATATAGGGTGATA  650

seq1  GAATCTGACACCCAGGAAAAGAACTGCCAATTGATAATATTCCTAACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGACACCCAGGAAAAGAACTGCCAATTGATAATATTCCTAACAGT  700

seq1  AGATAAGGGTTGCCAATCTGTTTGTCTCATTAGTGTTTCATTTTGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGGTTGCCAATCTGTTTGTCTCATTAGTGTTTCATTTTGTTTTG  750

seq1  TTTCAACTTTGGCACTGCTCTACATCATTGAGAACTATTCATCAAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTTTGGCACTGCTCTACATCATTGAGAACTATTCATCAAGAGCA  800

seq1  ACCATATTGTATTAAATTTATAGAGAATTGTTTCATCAATTTTATCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTGTATTAAATTTATAGAGAATTGTTTCATCAATTTTATCAAAC  850

seq1  AGCATACGCGATATATTTTTTGAGTCAATAGTCACACCAAAGATTCTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACGCGATATATTTTTTGAGTCAATAGTCACACCAAAGATTCTGGT  900

seq1  AAAAGATACCTGGTGAACATTTT-GGAGAATATACTGTACCCTCCTGACT  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAAGATACCTGGTGAACATTTTGGGAGAATATACTGTACCCTCCTGACT  950

seq1  GAAAATATGAATGCATTATTCAACTTGGAATTCCTTCAATATTTCTTAGT  999
      |||||||||||||||||||||||||  ||||| |||||||||||| ||||
seq2  GAAAATATGAATGCATTATTCAACT--GAATT-CTTCAATATTTC-TAGT  996

seq1  TTATGTAAAAAAAAGAATATAAAAAATGGACTTCTGTGCAAAACCTAAAA  1049
      ||||||      ||||| || | |||||||| ||||||||||  || |||
seq2  TTATGT------AAGAAGAT-ATAAATGGAC-TCTGTGCAAA--CT-AAA  1035

seq1  GTAGAATTAAAGCACCAGAAAAGAGAAAAATATTGGAGAGTTTGTTTGTG  1099
      |||||||| ||||||||| |||||||||||||| |||||||||| |||||
seq2  GTAGAATT-AAGCACCAG-AAAGAGAAAAATATGGGAGAGTTTGGTTGTG  1083

seq1  TTTTATTGCAGAGAACAGCTAAATAGGTGTAAGTTTCACA-AATATATTA  1148
      |||  | |||||||||||   |||||| |||||  ||||| | ||| | |
seq2  TTTATTGGCAGAGAACAGGCTAATAGG-GTAAG-GTCACATATTATTTAA  1131

seq1  TTTAG--TAACACAAATATC-ACTT  1170
      |||||  |||| |||||||| ||||
seq2  TTTAGGTTAACCCAAATATCTACTT  1156


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