BAC Information

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BAC

Clone NameB6Ng01-287C19
Chromosome6 (Build37)4 (Build37)
Map Location 19,065,920 - 19,067,07735,610,495 - 35,610,742
singlet/doubletsingletsinglet
Overlap geneLOC626180
Upstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287C19.bB6Ng01-287C19.g
ACCGA085169GA085170
length1,1621,086
definitionB6Ng01-287C19.b B6Ng01-287C19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,065,920 - 19,067,077)(35,610,495 - 35,610,742)
sequence
gaattcactctgtagactaggctggccttgaactcagaaatctgcctgcc
tcagcctcctaaatgttgggattaaaggcatgtgccaccactgtctggga
agtgtcagccatatttaattcatacatcatgtttatttttattacattct
tgaggtcacttttacttggtgtcttaaatatcgaccctttaacaatgaaa
tgaccacctttttgatttttaactatctcactttgtttattctatgctta
ggtgtgttatattttatgccaggaaaaatataaaacagagttatataaat
aatcaacttcctcgaggagtttcaaaattttaatatatccttctatctgt
aaaatgtattttaaagttgcttgtgacatgttggaactcacaaaaaggct
tctcagatatcaactttcatttggtttcattttaaattcacctttcatgt
aaaattctgttttgttagatttttattgctctcattatttcagcatgaac
agataattccagtggtttttttttttttttaattttgtgtgtgtgctttg
ttactgctgagcatccagtatagtgtttatctttgctactttctttactg
tgatttttctctttagcttctctgacatttctttctttaagactgatccc
cactttgtggtttttgtttttgtttttgttttttggtttttttttttttt
ttttttgaaatttttgacttttgtatcattttctttatttctagttgctg
cctctcccctcccgatcactcctcccaaagtttcttattctcttccccct
cttctttgcctctgagagggtaagccttcccggcttctccccctccctcc
tccctggtcaccaggcctcccccttctctgggacctcaactcttgagagg
attaagcacacttttctcccccgtgagtcaagaccaggcgacctctgcta
tatatgtgtcaggggcctcaaacaagactttgtatgctgcctgttggtag
ctcagtctctaagagctcctttggggtttggttagtttgaaacaagctgg
tcttcctatggggtaaccctcccttcaccttcttccaatcttcctaatat
acacacaatgaagtctccacacttcagtcccaaggtgtaaataaagtatc
tgcatctgtctc
gaattctcaactgagggatactgaagggctgagtagcacttgaaaaatcg
atcaacatccttaatcatcagggaaatgcaaatcaaaataaacctgagat
cccacctcacaccagtcagaatgggtaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggaaaaagaggaacactccttcattgctggtg
ggatagcaaccactctggaaatcagtctggcggttcctcagagacttctt
tctaatagcgttagcagaattaagaatctagccatctcggcacattctga
acacctgtgcaatgttctataggactgattccaaacaaaacagagcttgc
atatattcatcttaagctttatcacatttgatacaggccaaggaaaaact
atcccctacacaggctggcgtttgagtccataaggattttaagactattt
aatacataataagaaaacttacatggaaaaatctaatcatactttaacta
gtttatcatctatcgatctttgtgatatagctgggaaaaaacaagaaaaa
aaaaacatccatcctgaccaagtaggtttcatcccagggatgcagggatg
gtttaatattcggaaatccatcaacgtaatccagtatataaacaaactca
aagacaaaaaccacatgatcatctcgttagatgctgagaaagcatttggc
aaaatccaacacccattcatgataaaagtcttggaaagatcaggaattca
aggtccatacctaaacatgataaaagcaatctacagcaaaccaatagcca
acatcaaagtaaatggtgagaagctggaagcaatcccactaaaatcaggg
actagacaaggctgtccacactcgccctacctattcaacattgtacttga
agtcctagccagagcaattagacagacaaaaggagattaatgggatacaa
attggaaaggaagaagtcaaaatatcactttttgcagatgatatgatagt
atatataaatgaccctaaattccaccagagaactcctaagcctgaataac
agctcattgaggtagctgaatataaaattaactcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19065920_19067077
seq2: B6Ng01-287C19.b_47_1208

seq1  GAATTCACTCTGTAGACTAGGCTGGCCTTGAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACTAGGCTGGCCTTGAACTCAGAAATCTGCCTGCC  50

seq1  TCAGCCTCCTAAATGTTGGGATTAAAGGCATGTGCCACCACTGTCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCTAAATGTTGGGATTAAAGGCATGTGCCACCACTGTCTGGGA  100

seq1  AGTGTCAGCCATATTTAATTCATACATCATGTTTATTTTTATTACATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGCCATATTTAATTCATACATCATGTTTATTTTTATTACATTCT  150

seq1  TGAGGTCACTTTTACTTGGTGTCTTAAATATCGACCCTTTAACAATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCACTTTTACTTGGTGTCTTAAATATCGACCCTTTAACAATGAAA  200

seq1  TGACCACCTTTTTGATTTTTAACTATCTCACTTTGTTTATTCTATGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACCTTTTTGATTTTTAACTATCTCACTTTGTTTATTCTATGCTTA  250

seq1  GGTGTGTTATATTTTATGCCAGGAAAAATATAAAACAGAGTTATATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTTATATTTTATGCCAGGAAAAATATAAAACAGAGTTATATAAAT  300

seq1  AATCAACTTCCTCGAGGAGTTTCAAAATTTTAATATATCCTTCTATCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTTCCTCGAGGAGTTTCAAAATTTTAATATATCCTTCTATCTGT  350

seq1  AAAATGTATTTTAAAGTTGCTTGTGACATGTTGGAACTCACAAAAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATTTTAAAGTTGCTTGTGACATGTTGGAACTCACAAAAAGGCT  400

seq1  TCTCAGATATCAACTTTCATTTGGTTTCATTTTAAATTCACCTTTCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATATCAACTTTCATTTGGTTTCATTTTAAATTCACCTTTCATGT  450

seq1  AAAATTCTGTTTTGTTAGATTTTTATTGCTCTCATTATTTCAGCATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGTTTTGTTAGATTTTTATTGCTCTCATTATTTCAGCATGAAC  500

seq1  AGATAATTCCAGTGGTTTTTTTTTTTTTTTAATTTTGTGTGTGTGCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTCCAGTGGTTTTTTTTTTTTTTTAATTTTGTGTGTGTGCTTTG  550

seq1  TTACTGCTGAGCATCCAGTATAGTGTTTATCTTTGCTACTTTCTTTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGAGCATCCAGTATAGTGTTTATCTTTGCTACTTTCTTTACTG  600

seq1  TGATTTTTCTCTTTAGCTTCTCTGACATTTCTTTCTTTAAGACTGATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCTCTTTAGCTTCTCTGACATTTCTTTCTTTAAGACTGATCCC  650

seq1  CACTTTGTGGTTTTTGTTTTTGTTTTTGTTTTTTGGTTTTTTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTGGTTTTTGTTTTTGTTTTTGTTTTTTGGTTTTTTTTTTTTTT  700

seq1  TTTTTTGAAATTTTTGACTTTTGTATCATTTTCTTTATTTCTAGTTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAAATTTTTGACTTTTGTATCATTTTCTTTATTTCTAGTTGCTG  750

seq1  CCTCTCCCCTCCCGATCACTCCTCCCAAAGTTTCTTATTCTCTTCCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCTCCCGATCACTCCTCCCAAAGTTTCTTATTCTCTTCCCCCT  800

seq1  CTTCTTTGCCTCTGAGAGGGTAAGCCTTCCCGGCTTCTCCCCCTCCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGCCTCTGAGAGGGTAAGCCTTCCCGGCTTCTCCCCCTCCCTCC  850

seq1  TCCCTGGTCACCAGGCCTCCCCCTTCTCTGGGACCTCAACTCTTGAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTCACCAGGCCTCCCCCTTCTCTGGGACCTCAACTCTTGAGAGG  900

seq1  ATTAAGCACAC-TTTCT-CCCCGTGAGTCCAGACCAGGCGGACCTCTGCT  948
      ||||||||||| ||||| ||||||||||| ||||||||| ||||||||||
seq2  ATTAAGCACACTTTTCTCCCCCGTGAGTCAAGACCAGGC-GACCTCTGCT  949

seq1  ATATATGTGTCAGGGGCCTCAGAC-AGACTTTGTATGCTGCCTGGTTGGT  997
      ||||||||||||||||||||| || |||||||||||||||||| ||||||
seq2  ATATATGTGTCAGGGGCCTCAAACAAGACTTTGTATGCTGCCT-GTTGGT  998

seq1  AGCTCAGTCTCTAGGAGCTCCTTGGGGTCTGGGTTAG-TTGAGAC-AGCT  1045
      ||||||||||||| ||||||||| |||  | |||||| |||| || ||||
seq2  AGCTCAGTCTCTAAGAGCTCCTTTGGGGTTTGGTTAGTTTGAAACAAGCT  1048

seq1  GGTCTTCCTATGGGGTAACCCTCCCCTTCAGCTTCTTCCAGTCTTTCCCT  1095
      |||||||||||||||||||||| ||||||| ||||||||| ||||  |||
seq2  GGTCTTCCTATGGGGTAACCCT-CCCTTCACCTTCTTCCAATCTT--CCT  1095

seq1  AATA-CCAC-CATAGAGGTCTCCA-ACTTCAGTCCAAGGGTGAGTAT-AA  1141
      ||||  ||| ||  || ||||||| |||||||||| | ||||   || ||
seq2  AATATACACACAATGAAGTCTCCACACTTCAGTCCCAAGGTGTAAATAAA  1145

seq1  GTATCTGCATCTGTCTC  1158
      |||||||||||||||||
seq2  GTATCTGCATCTGTCTC  1162

seq1: chr4_35610495_35610742
seq2: B6Ng01-287C19.g_904_1149 (reverse)

seq1  TTGAGTTAATTTTATATCCAGCTACTTCACTGAAGCTGTTTATCAGGTTT  50
      ||||||||||||||||| ||||||| ||| || |||||||  ||||| ||
seq2  TTGAGTTAATTTTATATTCAGCTACCTCAATG-AGCTGTTATTCAGGCTT  49

seq1  AGGAGTTCTCTGGTAGAATTTTTAGGGTCACTTATATATACTATCATATC  100
      |||||||||||||| |||  |||||||||| |||||||||||||||||||
seq2  AGGAGTTCTCTGGTGGAA--TTTAGGGTCATTTATATATACTATCATATC  97

seq1  ATCTGCAAAAAGTTATATTTTGACTTCATCTTTTCCAATTTGTATCCCCT  150
      ||||||||||||| ||||||||||||| || ||||||||||||||||| |
seq2  ATCTGCAAAAAGTGATATTTTGACTTCTTCCTTTCCAATTTGTATCCCAT  147

seq1  TGATCCCCTTTTGT-TGTCAAATTGCTCTGGCTAGGACTTCAAGTACAAT  199
      | ||| |||||||| |||| ||||||||||||||||||||||||||||||
seq2  TAATCTCCTTTTGTCTGTCTAATTGCTCTGGCTAGGACTTCAAGTACAAT  197

seq1  GTTGAATAGATAGGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  248
      ||||||||| ||||| ||  |||| ||||||||||||||||||||||||
seq2  GTTGAATAGGTAGGGCGAGTGTGGACAGCCTTGTCTAGTCCCTGATTTT  246