BAC Information

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BAC

Clone NameB6Ng01-287H06
Chromosome6 (Build37)
Map Location 119,500,161 - 119,609,978
singlet/doubletdoublet
Overlap geneErc1
Upstream geneAnkrd26, Cacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287H06.bB6Ng01-287H06.g
ACCGA085374GA085375
length1,1571,183
definitionB6Ng01-287H06.b B6Ng01-287H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,500,161 - 119,500,979)(119,608,778 - 119,609,978)
sequence
gaattccctatgttccacctaatgtttaactataggtctcgcatctgttt
tcatcagttgctgggtgaagcctctctgatggcaattgggctaggcacca
aactgaatacagcagattcatcaggactcattttctaccctaggactctg
agctaagcatcctctgtgtcctggtccttcaggcagtgtcaggggtaggc
tcctctcgtcgcatgagtctcaagttggccactcccactagttccgtgtc
acctttacaccagtacttcctgtaggcaggacaaattgtaggtcataggt
tttatggctgggttgatgccccggtcccaaactcttgcctggttatagga
gatggctggttcagactcagtatcccctattgctaggagtcttacctagg
gtcatgtgagggagtttcttgatcaggttatttgaaatgggaagattcac
cctaaatgtgtggtactctctagtggcagccagataaaagaaggatgctt
tttgccttgttgctttcacattttgttggtgagttcctctactctgttgc
tgtggctgtagctgctgttctaataccttcctttgctggtattagaactc
agctaatccattcttccaacatggaccaaagaccaatgtctctccaggaa
tcttccaggcctagtgtccaagactaggactgctaaggcagccagccaga
ctcgtgggataagcagctatggggatctcaagccttcagtgtgaaggcaa
tcattgtttgacctcacacatcacatcgagtgagccaatctaatacatct
gtttttaatattcattctattatttcctctcctctagagagctctgtgaa
aatatcccccgcgtcacctttttctcctatctccggtgatgagtcccatt
ctaaagggacgctaggaggaaacagaagcagtgtctatccctaggggact
tgcaatcatgcgctgctaggaaaggaaaacacatcgcaccagatgaccct
gtcaatgctaagtagcaaagtcccagccagggtcttttgttcttcctgaa
ggatctgattccactaagcaagcacctttcttctctgtgccttctgaaga
gcatagcgctctgtcacccctagtaacaaatgatggctcaagaagaatgg
aaagaga
gaattctctttactcagagttccctgtgttcaaagaaagctgctcagtga
tgctcctcagcttcaggcaaacatgaaccttgggaattgataaaaaaaag
ttgtatgattgtctccatccaagtttccctttgtctctgacctgcagtaa
ttttctagcacttaagcagcttcataaggaagaaactgaagggtatgctt
gtagtaagaggaatggtggagtgtgccaggagtctgcattgttatcacca
aaggttgccagatccccggggcctgtcctggttagcttctcctgagttaa
ggggagcctctaatctactgtttataatgagttgaagattgaaccgatac
tcagggtttatgttcagtaattgaatcaaagctgctaattttcagttggc
atttcctatgcagtaagaaaataactctggcagccaaggcacgtgacttt
gttggtgaacatagggatgagagtacatctcataaatctgctagttaaaa
ttaggataatagttggaaaagacagtttaataaacatatataaatccatt
tttcagttccattacttgttggaaactttaaggttgactacattaattat
ttatctttattaacaaaatcaaaaacaatcaaataaagtgcatagatatt
gaataatccaagttttatagttttaactcagtttttcattcattaataaa
atatatatcctttctttcataatacagtatatacaaattgctcatttatt
tgtgtctcatttatttaatttggtcattggttgttactatatgcagccac
ttattatacaaactcctaccaaaattaatccctgttagtttgggaatctt
cttgcagtatgaaactaccagtcttctacttccatattcacagtccaaaa
tgtaattcattcctgtgtagaaaaatgaggccaaggttgcggttagtagt
gatgtttccttgtcgaacaagtctttatcagtttccccttacccttattt
ctcaggagtcaagcagacagtccttgcggtcctgcttcactctgacagtg
acattaagtcaggtcaaattttttactcaagttcattatttgacagggag
aaacgagtcctctgggccttctcaacctaatactactggcattagtctaa
ctcaatctaacggtttccaaggtgacaaaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119500161_119500979
seq2: B6Ng01-287H06.b_392_1200

seq1  GAGATGGCTGGTTCAGACTCAGTATCCCCTATTGCTAGGAGTCTTACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTGGTTCAGACTCAGTATCCCCTATTGCTAGGAGTCTTACCTA  50

seq1  GGGTCATGTGAGGGAGTTTCTTGATCAGGTTATTTGAAATGGGAAGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATGTGAGGGAGTTTCTTGATCAGGTTATTTGAAATGGGAAGATTC  100

seq1  ACCCTAAATGTGTGGTACTCTCTAGTGGCAGCCAGATAAAAGAAGGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAATGTGTGGTACTCTCTAGTGGCAGCCAGATAAAAGAAGGATGC  150

seq1  TTTTTGCCTTGTTGCTTTCACATTTTGTTGGTGAGTTCCTCTACTCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTTGTTGCTTTCACATTTTGTTGGTGAGTTCCTCTACTCTGTT  200

seq1  GCTGTGGCTGTAGCTGCTGTTCTAATACCTTCCTTTGCTGGTATTAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCTGTAGCTGCTGTTCTAATACCTTCCTTTGCTGGTATTAGAAC  250

seq1  TCAGCTAATCCATTCTTCCAACATGGACCAAAGACCAATGTCTCTCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAATCCATTCTTCCAACATGGACCAAAGACCAATGTCTCTCCAGG  300

seq1  AATCTTCCAGGCCTAGTGTCCAAGACTAGGACTGCTAAGGCAGCCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCAGGCCTAGTGTCCAAGACTAGGACTGCTAAGGCAGCCAGCCA  350

seq1  GACTCGTGGGATAAGCAGCTATGGGGATCTCAAGCCTTCAGTGTGAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGTGGGATAAGCAGCTATGGGGATCTCAAGCCTTCAGTGTGAAGGC  400

seq1  AATCATTGTTTGACCTCACACATCACATCGAGTGAGCCAATCTAATACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTGTTTGACCTCACACATCACATCGAGTGAGCCAATCTAATACAT  450

seq1  CTGTTTTTAATATTCATTCTATTATTTCCTCTCCTCTAGAGAGCTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTAATATTCATTCTATTATTTCCTCTCCTCTAGAGAGCTCTGTG  500

seq1  AAAATATCCCCCGCGTCACCTTTTTCTCCTATCTCCGGTGATGAGTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCCCCGCGTCACCTTTTTCTCCTATCTCCGGTGATGAGTCCCA  550

seq1  TTCT-AAGGGACGCTAGGAGGAAACAGAAGCAGGTGTCTATCCCTAGGGG  599
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCTAAAGGGACGCTAGGAGGAAACAGAAGCA-GTGTCTATCCCTAGGGG  599

seq1  ACTTGCAATCATGCGCTGCTAGGATAG--AAACACATCGCACCAGATGAC  647
      |||||||||||||||||||||||| ||  |||||||||||||||||||||
seq2  ACTTGCAATCATGCGCTGCTAGGAAAGGAAAACACATCGCACCAGATGAC  649

seq1  CCTGTCAATGCTTAGGTAGCAAAGTCCCAGCCAGGGTCTTTTGTTCTTCC  697
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  CCTGTCAATGC-TAAGTAGCAAAGTCCCAGCCAGGGTCTTTTGTTCTTCC  698

seq1  CTGAGGATCTGATTCACCTAAGCAGGCCACCTTCCTTCTCTGTGCCTTCT  747
         ||||||||||||  ||||||| | |||||| ||||||||||||||||
seq2  TGAAGGATCTGATTCCACTAAGCAAG-CACCTTTCTTCTCTGTGCCTTCT  747

seq1  GAAGAGCATAGGCCGGCTCTGTCACCCCTAAGGTTAAACAAATATGATTG  797
      |||||||||||    |||||||||||||||  ||  |||||  |||||  
seq2  GAAGAGCATAG---CGCTCTGTCACCCCTA--GT--AACAA--ATGAT--  786

seq1  GGTCCAAGAAG-ATGGAGAGAGA  819
      ||  ||||||| ||||| |||||
seq2  GGCTCAAGAAGAATGGAAAGAGA  809

seq1: chr6_119608778_119609978
seq2: B6Ng01-287H06.g_60_1242 (reverse)

seq1  GAGTTTTGTCACTTGAAAAACAGTTTAGATGGGAAGGTAGAATTTAATGC  50
      |||||||||||| |   |||| | |||||| |  || ||||   ||||||
seq2  GAGTTTTGTCACCTTGGAAACCG-TTAGATTG--AGTTAGA--CTAATGC  45

seq1  AAGTAGTTATTTAGGTTGAGA--GGCCAGA-GACTCGTTTCTCCCTGTTC  97
       ||||||   |||||||||||  | ||||| |||||||||||||||| ||
seq2  CAGTAGT--ATTAGGTTGAGAAGGCCCAGAGGACTCGTTTCTCCCTG-TC  92

seq1  AAATAATGAACTTTGAGTAAAATATTTTGACTTGACTTTAAATTGTTCCA  147
      ||||||||||| |||||||||| | |||||| ||||||   | |||  ||
seq2  AAATAATGAAC-TTGAGTAAAA-AATTTGACCTGACTT---AATGT--CA  135

seq1  CTGTCAGAGGTTGAAAGCAAGGACCGCAAGGACTGTTCTGCTGGACT-CT  196
      |||||||||  || |||| |||||||||||||||| |||||| |||| ||
seq2  CTGTCAGAG--TG-AAGC-AGGACCGCAAGGACTG-TCTGCTTGACTCCT  180

seq1  GAGAAAATAAGGGTTAAGGGGAAACTGATAAAAGACTTG-TCGACAAGGA  245
      ||| ||||||||| ||||||||||||||| ||||||||| ||||||||| 
seq2  GAG-AAATAAGGG-TAAGGGGAAACTGAT-AAAGACTTGTTCGACAAGG-  226

seq1  AAACATCACTACTAACCGCAACCTTGGCCTCA-TTTTCTACACAGGAATG  294
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAACATCACTACTAACCGCAACCTTGGCCTCATTTTTCTACACAGGAATG  276

seq1  AATTACATTTTGGACTGTGAATATGGAAGTAGAAGACTGGTAGTTTCATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTTTGGACTGTGAATATGGAAGTAGAAGACTGGTAGTTTCATA  326

seq1  CTGCAAGAAGATTCCCAAACTAACAGGGATTAATTTTGGTAGGAGTTTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAAGATTCCCAAACTAACAGGGATTAATTTTGGTAGGAGTTTGT  376

seq1  ATAATAAGTGGCTGCATATAGTAACAACCAATGACCAAATTAAATAAATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGTGGCTGCATATAGTAACAACCAATGACCAAATTAAATAAATG  426

seq1  AGACACAAATAAATGAGCAATTTGTATATACTGTATTATGAAAGAAAGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAATAAATGAGCAATTTGTATATACTGTATTATGAAAGAAAGGA  476

seq1  TATATATTTTATTAATGAATGAAAAACTGAGTTAAAACTATAAAACTTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTTATTAATGAATGAAAAACTGAGTTAAAACTATAAAACTTGG  526

seq1  ATTATTCAATATCTATGCACTTTATTTGATTGTTTTTGATTTTGTTAATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAATATCTATGCACTTTATTTGATTGTTTTTGATTTTGTTAATA  576

seq1  AAGATAAATAATTAATGTAGTCAACCTTAAAGTTTCCAACAAGTAATGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATAATTAATGTAGTCAACCTTAAAGTTTCCAACAAGTAATGGA  626

seq1  ACTGAAAAATGGATTTATATATGTTTATTAAACTGTCTTTTCCAACTATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAATGGATTTATATATGTTTATTAAACTGTCTTTTCCAACTATT  676

seq1  ATCCTAATTTTAACTAGCAGATTTATGAGATGTACTCTCATCCCTATGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATTTTAACTAGCAGATTTATGAGATGTACTCTCATCCCTATGTT  726

seq1  CACCAACAAAGTCACGTGCCTTGGCTGCCAGAGTTATTTTCTTACTGCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACAAAGTCACGTGCCTTGGCTGCCAGAGTTATTTTCTTACTGCAT  776

seq1  AGGAAATGCCAACTGAAAATTAGCAGCTTTGATTCAATTACTGAACATAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGCCAACTGAAAATTAGCAGCTTTGATTCAATTACTGAACATAA  826

seq1  ACCCTGAGTATCGGTTCAATCTTCAACTCATTATAAACAGTAGATTAGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGTATCGGTTCAATCTTCAACTCATTATAAACAGTAGATTAGAG  876

seq1  GCTCCCCTTAACTCAGGAGAAGCTAACCAGGACAGGCCCCGGGGATCTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCTTAACTCAGGAGAAGCTAACCAGGACAGGCCCCGGGGATCTGG  926

seq1  CAACCTTTGGTGATAACAATGCAGACTCCTGGCACACTCCACCATTCCTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTGGTGATAACAATGCAGACTCCTGGCACACTCCACCATTCCTC  976

seq1  TTACTACAAGCATACCCTTCAGTTTCTTCCTTATGAAGCTGCTTAAGTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACAAGCATACCCTTCAGTTTCTTCCTTATGAAGCTGCTTAAGTGC  1026

seq1  TAGAAAATTACTGCAGGTCAGAGACAAAGGGAAACTTGGATGGAGACAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTACTGCAGGTCAGAGACAAAGGGAAACTTGGATGGAGACAAT  1076

seq1  CATACAACTTTTTTTTATCAATTCCCAAGGTTCATGTTTGCCTGAAGCTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAACTTTTTTTTATCAATTCCCAAGGTTCATGTTTGCCTGAAGCTG  1126

seq1  AGGAGCATCACTGAGCAGCTTTCTTTGAACACAGGGAACTCTGAGTAAAG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATCACTGAGCAGCTTTCTTTGAACACAGGGAACTCTGAGTAAAG  1176

seq1  AGAATTC  1201
      |||||||
seq2  AGAATTC  1183