BAC Information

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BAC

Clone NameB6Ng01-287L20
Chromosome6 (Build37)
Map Location 75,906,386 - 75,907,556
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287L20.bB6Ng01-287L20.g
ACCGA085581GA085582
length1,1641,151
definitionB6Ng01-287L20.b B6Ng01-287L20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaccaatgttcctttggtttctctattgtacaataatttgagttg
tatttaaatgaactgttctttgaaagcctggtacaactctgaagtaaaac
catcttgctgtgatttttctttgtttgtttatgtttttgtgtttgtgttc
gtttttgttttttatttccagcatttttttgttttatgttgctttgttta
ttcgatttcattcgtcttgttttgttgttgttcttggttttggctggtag
atatttttagttgctgcttctatctcagtaaagtctataggtttgcttac
actgcttatcttgtcttgatttagctttgttaaagggtatttatccagaa
atttattaatttcttttagattttttaattttgctaagtatgggattaaa
aactatcttcttataatttcctgtgtttcctttgtatgtcctccttttcc
tttctaagcttcttaatttggatattctgtctctaatttttcattattat
tccatgccatctattcctttgagtatggattcctttttttcttctggaga
tgtttttctctgaaattattaaagtaagatcttttcaatggtttcaattt
aggcgcttagtattaagaaattgtctcttagaatatccttcattgtatct
cataagtttagaatatataaattcaatttcatataattctagatagtctt
taatttctttttaatttctattttactcatttttttttattttagcaggc
agctttttccagttttaatgagattatattcttttttgttgtttctgttg
ttgatatacagctttagtcgatggtggtcaaatgggatttagggtattat
ttcccagacactgggccaccaaccaggcagcatacaccagataatatgag
gcccccaacacatatatagcagaggactgccgggtttggactcagtcaaa
gaaaatgtacctaaaccttggagagactggaagtcccaggagtggggagt
cagaggtgactgggagcagatgacttctgaacggaaaagattaagaaaag
aaagataagaaaatgaaaatgtttctatgtgacactatatgctaatgttg
tccagataccaggctaaaagcgtattttaatgtgctaagtctgtaatcct
ctagaccattatgt

gaattcatgtcagcacacaaaattaaaaggagactgcttagaatattatg
gtggtttgaatatgcttagctaagggagtggcactattaaatggtgtggt
atttatgaagtaggtgtgcctttttcagagaagatgcgtcactgtgcaga
tgagttttgagaccctccttttacccatgtgggagccagacttctcctgt
ttgcagttgaatctagatgcaaacctctcaactccttctctagcaccatt
tctgcctaaacaccatcatgcttctagctttgataataatggactgagcc
tctgaacctgtaagccagccccaagtaaataagactttataagacttgcc
ttggtcatggtgtctcttcacagcaatggaaaacctaactaaaaatatga
tgcacattttttattagacagatgatcctttaggaaacataaaagacatc
caacaaataggcctcctcacctatagaggaatcatattcacgtctctgtt
ctgcaattttacctttttagtctatctcatctaaagagaatacagaatac
agtaatcttttaatgaaactgttttactgtttgtttttgctgttagtata
taattctgctactctaatgatagcaaagtgctatgtagttacactaaaca
catgggattctttctatttcatgacatgtaatatttatatgagtactgtc
aagaaatcttatgtgaataagtataagaaaattgttacatatctgcagag
tataacacagttagaaatgacagtgatgtcaaacaattacacgttgtttc
catagaagtttaaataatagcattattagcatatcatttttaaatataaa
ctcatttagtttcaaacacaatttatttaatatgccatgaatttgctgtt
agtacccatacaatgtacatattattgttttgtttgtttaagcttggact
ctttaccaagtttatcattatgcaattcaaataaaaaataaaaccacttt
gtatcaatactttgtcaagggatatcagctatcttagtagttttatatat
attatactagtaagaaaatcactcttatatcacaggtccttatggagaat
gtgcctataatatccctggcatgatgaattacctagaccattttcctcca
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_75906386_75907556
seq2: B6Ng01-287L20.g_67_1217

seq1  GAATTCATGTCAGCACACAAAATTAAAAGGAGACTGCTTAGAATATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCAGCACACAAAATTAAAAGGAGACTGCTTAGAATATTATG  50

seq1  GTGGTTTGAATATGCTTAGCTAAGGGAGTGGCACTATTAAATGGTGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGAATATGCTTAGCTAAGGGAGTGGCACTATTAAATGGTGTGGT  100

seq1  ATTTATGAAGTAGGTGTGCCTTTTTCAGAGAAGATGCGTCACTGTGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAAGTAGGTGTGCCTTTTTCAGAGAAGATGCGTCACTGTGCAGA  150

seq1  TGAGTTTTGAGACCCTCCTTTTACCCATGTGGGAGCCAGACTTCTCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGAGACCCTCCTTTTACCCATGTGGGAGCCAGACTTCTCCTGT  200

seq1  TTGCAGTTGAATCTAGATGCAAACCTCTCAACTCCTTCTCTAGCACCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTGAATCTAGATGCAAACCTCTCAACTCCTTCTCTAGCACCATT  250

seq1  TCTGCCTAAACACCATCATGCTTCTAGCTTTGATAATAATGGACTGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTAAACACCATCATGCTTCTAGCTTTGATAATAATGGACTGAGCC  300

seq1  TCTGAACCTGTAAGCCAGCCCCAAGTAAATAAGACTTTATAAGACTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCTGTAAGCCAGCCCCAAGTAAATAAGACTTTATAAGACTTGCC  350

seq1  TTGGTCATGGTGTCTCTTCACAGCAATGGAAAACCTAACTAAAAATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATGGTGTCTCTTCACAGCAATGGAAAACCTAACTAAAAATATGA  400

seq1  TGCACATTTTTTATTAGACAGATGATCCTTTAGGAAACATAAAAGACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTTTTTATTAGACAGATGATCCTTTAGGAAACATAAAAGACATC  450

seq1  CAACAAATAGGCCTCCTCACCTATAGAGGAATCATATTCACGTCTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATAGGCCTCCTCACCTATAGAGGAATCATATTCACGTCTCTGTT  500

seq1  CTGCAATTTTACCTTTTTAGTCTATCTCATCTAAAGAGAATACAGAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATTTTACCTTTTTAGTCTATCTCATCTAAAGAGAATACAGAATAC  550

seq1  AGTAATCTTTTAATGAAACTGTTTTACTGTTTGTTTTTGCTGTTAGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTTTTAATGAAACTGTTTTACTGTTTGTTTTTGCTGTTAGTATA  600

seq1  TAATTCTGCTACTCTAATGATAGCAAAGTGCTATGTAGTTACACTAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGCTACTCTAATGATAGCAAAGTGCTATGTAGTTACACTAAACA  650

seq1  CATGGGATTCTTTCTATTTCATGACATGTAATATTTATATGAGTACTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGATTCTTTCTATTTCATGACATGTAATATTTATATGAGTACTGTC  700

seq1  AAGAAATCTTATGTGAATAAGTATAAGAAAATTGTTACATATCTGCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCTTATGTGAATAAGTATAAGAAAATTGTTACATATCTGCAGAG  750

seq1  TATAACACAGTTAGAAATGACAGTGATGTCAAACAATTACACGTTGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACAGTTAGAAATGACAGTGATGTCAAACAATTACACGTTGTTTC  800

seq1  CATAGAAGTTTAAATAATAGCATTATTAGCATATCATTTTTAAATATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGTTTAAATAATAGCATTATTAGCATATCATTTTTAAATATAAA  850

seq1  CTCATTTAGTTTCAAACACAATTTATTTAATATGCCATGAATTTGCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTAGTTTCAAACACAATTTATTTAATATGCCATGAATTTGCTGTT  900

seq1  AGTACCCATACAATGTACATATTATTGTTTTGTTTGTTTAAGCTTGGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCATACAATGTACATATTATTGTTTTGTTTGTTTAAGCTTGGACT  950

seq1  CTTTACCCAAGTTTTATCATTATGCAATTCAAAT-AAAAATAAAACCACT  999
      ||||| ||||| |||||||||||||||||||||| |||||||||||||||
seq2  CTTTA-CCAAG-TTTATCATTATGCAATTCAAATAAAAAATAAAACCACT  998

seq1  TTGGTATCAAATACTTTGTCCAAGGGATAATCAAGCCTTAATCTTAAGTT  1049
      || ||||| |||||||||| |||||||| ||| |||    ||||| ||| 
seq2  TT-GTATC-AATACTTTGT-CAAGGGAT-ATC-AGC---TATCTT-AGT-  1038

seq1  AAGTTTTATATATATTTATACTAAGTTAAGAAAATTCACTCTTATATCAC  1099
       ||||||||||||| ||||||||   |||||||| |||||||||||||||
seq2  -AGTTTTATATATA-TTATACTA--GTAAGAAAA-TCACTCTTATATCAC  1083

seq1  AGTTCTTTAT-GAGAATTGTGCTTATTAAATAATCTCT-GCATTTAATGA  1147
      || || |||| ||||| ||||| |||  ||| ||| || |||  | ||||
seq2  AGGTCCTTATGGAGAA-TGTGCCTAT--AAT-ATCCCTGGCA--TGATGA  1127

seq1  TATAACCCTAG--CATTTTCCTCCAA  1171
        ||  |||||  |||||||||||||
seq2  ATTA--CCTAGACCATTTTCCTCCAA  1151


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