BAC Information

Click to search

BAC

Clone NameB6Ng01-287N13
Chromosome6 (Build37)
Map Location 104,915,630 - 105,035,972
singlet/doubletdoublet
Overlap geneLOC384470
Upstream geneLOC100043345, Cntn6
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287N13.bB6Ng01-287N13.g
ACCGA085661GA085662
length1,1691,033
definitionB6Ng01-287N13.b B6Ng01-287N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,034,816 - 105,035,972)(104,915,630 - 104,916,671)
sequence
gaattctcttttttgagtgccaagttcctttgctaactggtacaaagggt
atttaagtgggaatttagtaggaaagtgatcttgaagaagttagacattg
tggatagtggatagcactgttttatatggtagcattgaacaccatactta
tcctgaaaagatcttaacagctgcttttctagtcatggatactttctttt
aaaatacaacatgggacaaattatttgcacaccattccactaatttacca
gctataacaagagggcaaacgctgaatccactcttaagctagtttaaggt
gaaatgaggaaaagcctattaaattgtaggcacattctatgtagtcatta
agtttatatgacagtggcaattacaaatttggttttgtttgtgagcctaa
tggtactctactatgtttacaacacaattatcctgacccaataaagtcag
taatccaaaatcacgatggtttaaaagcaggcctcatgagatacacagag
agaaaagaaattagcttcttcagcatcctcatccaaagtataaattgaag
agataaaatttgactgacctgccattttcctgttttcaatcttcatgtaa
cagactatatattttcaaagttgactgtaaatatattgtaaattctattc
agacttaaaatatatgctaaaagtaattagagtacttgaaaactaatacc
tactgcagaaatattaattatgcacgtaatgaaaatctggaaatcagcac
atgaaaccaggtagggattgataacttgtgaggttttgtttccacattta
atcagttgataacaaatatttgttgaggcatatcaagggcttcatctata
attagttaatataatatttactttgctatagggcacagaataatgccttc
agataaatatcattaaagaggttggagagatggcttagaggctagcagca
tttacttctcttgcagcattgttttttggcagtgcacacatcttctatac
tccatcttccaagagcatggtaccctctttctaatttctgctgccttaag
tcacatacatagcacacgaacatacattgcagcaagcactcggtatacgt
gaaataaaaacatcttaagaattgcttaatcataaaaatagaatcattca
atgatagccaagatagtag
gaattcacaacagaagaatcttgaatatcagagaaccacttaaagaaatg
ttcaatatatttagtcatcagggaaatgcaaatcaaaataaccctgagat
tccaccatacaccagtcagaatggttaagataaaaaaactcaaatgacag
cagatgctgatgacatcatgaatttttcaggcaaatggatggaactagaa
aataatatcctgagtgaggtcacccaaacccaaaaggacatgtgtggtat
gcactcactgataggttgatattagccaaaaagtatagaataagtagggt
acaacccacagactgtaagaagtttaccatgcagaaaggcccaagtgagg
aatgcatctatcctatttagaaggggaaagacaataaacaagggaggcag
aggaatggaaggacctgggtgggggaaagcgaaacgcagaataggatcaa
acccttctattatgtaacgtgttaactttcttgcctagtccttcaggtga
tgagtataaagtttgtgaattaatcattgggattcattacaggttagtta
aaagaaattaacataaattggcaactggttttctaaataggagtagacaa
aagaaagaagaaaaacggttggtatgggatttaaaaaatccatataaaaa
gaagtaattcaaatgaaaataaaactaattcaacaataaagataagtatt
gtcctgtattgcatttaaatagtttctgtagagaaactggttgttaatcc
aattattttataatatttttacatgtagtgagacccgtagcttttgctat
ctcctcaaataagacaaatagccacccagcttctttatacattcactgac
aaagtactttgagacatattcttcaaattttagtagtaaacattttttta
atttaaaataaattagtctcccataccatatgtcctgaccagggtttccc
ctccctccattctcctacttcttctacctttctcaaattcattccttctc
tttacttcagaaaagtacagcctactagagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_105034816_105035972
seq2: B6Ng01-287N13.b_46_1214 (reverse)

seq1  CTACTAT----------TTTGAATGA-TCTATTTTTTATGATTTAAAGCA  39
      |||||||           |||||||| |||| |||||||||||  |||||
seq2  CTACTATCTTGGCTATCATTGAATGATTCTA-TTTTTATGATT--AAGCA  47

seq1  A-TCTTTAGATGTTTTTATTTCACGTATA-CGAGTGCTTTGCTTGCATGT  87
      | |||| |||||||||||||||||||||| ||||||| |||||   ||||
seq2  ATTCTTAAGATGTTTTTATTTCACGTATACCGAGTGC-TTGCTGCAATGT  96

seq1  ATGTTCGTGTGCTATGTATGTGACTTAAGGCAGCAGAAATTAG-AAGAGG  136
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGTTCGTGTGCTATGTATGTGACTTAAGGCAGCAGAAATTAGAAAGAGG  146

seq1  GTACCATGCTCCTTGGAGATGGAGTTATAG-AGATGTGTGCACTGCCAAA  185
      ||||||||||| | | |||||||| ||||| |||||||||||||||||||
seq2  GTACCATGCTCTTGGAAGATGGAG-TATAGAAGATGTGTGCACTGCCAAA  195

seq1  AA--CATGCTGCAAGAGAAGTAAATGCTGCTAGCCTCTAAGCCATCTCTC  233
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGCTGCAAGAGAAGTAAATGCTGCTAGCCTCTAAGCCATCTCTC  245

seq1  CAACCTCTTTAATGATATTTATCTGAAGGCATTATTCTGTGCCCTATAGC  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTTTAATGATATTTATCTGAAGGCATTATTCTGTGCCCTATAGC  295

seq1  AAAGTAAATATTATATTAACTAATTATAGATGAAGCCCTTGATATGCCTC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATATTATATTAACTAATTATAGATGAAGCCCTTGATATGCCTC  345

seq1  AACAAATATTTGTTATCAACTGATTAAATGTGGAAACAAAACCTCACAAG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATATTTGTTATCAACTGATTAAATGTGGAAACAAAACCTCACAAG  395

seq1  TTATCAATCCCTACCTGGTTTCATGTGCTGATTTCCAGATTTTCATTACG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATCCCTACCTGGTTTCATGTGCTGATTTCCAGATTTTCATTACG  445

seq1  TGCATAATTAATATTTCTGCAGTAGGTATTAGTTTTCAAGTACTCTAATT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTAATATTTCTGCAGTAGGTATTAGTTTTCAAGTACTCTAATT  495

seq1  ACTTTTAGCATATATTTTAAGTCTGAATAGAATTTACAATATATTTACAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGCATATATTTTAAGTCTGAATAGAATTTACAATATATTTACAG  545

seq1  TCAACTTTGAAAATATATAGTCTGTTACATGAAGATTGAAAACAGGAAAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTGAAAATATATAGTCTGTTACATGAAGATTGAAAACAGGAAAA  595

seq1  TGGCAGGTCAGTCAAATTTTATCTCTTCAATTTATACTTTGGATGAGGAT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTCAGTCAAATTTTATCTCTTCAATTTATACTTTGGATGAGGAT  645

seq1  GCTGAAGAAGCTAATTTCTTTTCTCTCTGTGTATCTCATGAGGCCTGCTT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGAAGCTAATTTCTTTTCTCTCTGTGTATCTCATGAGGCCTGCTT  695

seq1  TTAAACCATCGTGATTTTGGATTACTGACTTTATTGGGTCAGGATAATTG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCATCGTGATTTTGGATTACTGACTTTATTGGGTCAGGATAATTG  745

seq1  TGTTGTAAACATAGTAGAGTACCATTAGGCTCACAAACAAAACCAAATTT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAAACATAGTAGAGTACCATTAGGCTCACAAACAAAACCAAATTT  795

seq1  GTAATTGCCACTGTCATATAAACTTAATGACTACATAGAATGTGCCTACA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGCCACTGTCATATAAACTTAATGACTACATAGAATGTGCCTACA  845

seq1  ATTTAATAGGCTTTTCCTCATTTCACCTTAAACTAGCTTAAGAGTGGATT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAGGCTTTTCCTCATTTCACCTTAAACTAGCTTAAGAGTGGATT  895

seq1  CAGCGTTTGCCCTCTTGTTATAGCTGGTAAATTAGTGGAATGGTGTGCAA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTTGCCCTCTTGTTATAGCTGGTAAATTAGTGGAATGGTGTGCAA  945

seq1  ATAATTTGTCCCATGTTGTATTTTAAAAGAAAGTATCCATGACTAGAAAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGTCCCATGTTGTATTTTAAAAGAAAGTATCCATGACTAGAAAA  995

seq1  GCAGCTGTTAAGATCTTTTCAGGATAAGTATGGTGTTCAATGCTACCATA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTTAAGATCTTTTCAGGATAAGTATGGTGTTCAATGCTACCATA  1045

seq1  TAAAACAGTGCTATCCACTATCCACAATGTCTAACTTCTTCAAGATCACT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTGCTATCCACTATCCACAATGTCTAACTTCTTCAAGATCACT  1095

seq1  TTCCTACTAAATTCCCACTTAAATACCCTTTGTACCAGTTAGCAAAGGAA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTAAATTCCCACTTAAATACCCTTTGTACCAGTTAGCAAAGGAA  1145

seq1  CTTGGCACTCAAAAAAGAGAATTC  1157
      ||||||||||||||||||||||||
seq2  CTTGGCACTCAAAAAAGAGAATTC  1169

seq1: chr6_104915630_104916671
seq2: B6Ng01-287N13.g_65_1097

seq1  GAATTCACAACAGAAGAATCTTGAATATCAGAGAACCACTTAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACAGAAGAATCTTGAATATCAGAGAACCACTTAAAGAAATG  50

seq1  TTCAATATATTTAGTCATCAGGGAAATGCAAATCAAAATAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATATTTAGTCATCAGGGAAATGCAAATCAAAATAACCCTGAGAT  100

seq1  TCCACCATACACCAGTCAGAATGGTTAAGATAAAAAAACTCAAATGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCATACACCAGTCAGAATGGTTAAGATAAAAAAACTCAAATGACAG  150

seq1  CAGATGCTGATGACATCATGAATTTTTCAGGCAAATGGATGGAACTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTGATGACATCATGAATTTTTCAGGCAAATGGATGGAACTAGAA  200

seq1  AATAATATCCTGAGTGAGGTCACCCAAACCCAAAAGGACATGTGTGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATCCTGAGTGAGGTCACCCAAACCCAAAAGGACATGTGTGGTAT  250

seq1  GCACTCACTGATAGGTTGATATTAGCCAAAAAGTATAGAATAAGTAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACTGATAGGTTGATATTAGCCAAAAAGTATAGAATAAGTAGGGT  300

seq1  ACAACCCACAGACTGTAAGAAGTTTACCATGCAGAAAGGCCCAAGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCACAGACTGTAAGAAGTTTACCATGCAGAAAGGCCCAAGTGAGG  350

seq1  AATGCATCTATCCTATTTAGAAGGGGAAAGACAATAAACAAGGGAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCTATCCTATTTAGAAGGGGAAAGACAATAAACAAGGGAGGCAG  400

seq1  AGGAATGGAAGGACCTGGGTGGGGGAAAGCGAAACGCAGAATAGGATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAAGGACCTGGGTGGGGGAAAGCGAAACGCAGAATAGGATCAA  450

seq1  ACCCTTCTATTATGTAACGTGTTAACTTTCTTGCCTAGTCCTTCAGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTATTATGTAACGTGTTAACTTTCTTGCCTAGTCCTTCAGGTGA  500

seq1  TGAGTATAAAGTTTGTGAATTAATCATTGGGATTCATTACAGGTTAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATAAAGTTTGTGAATTAATCATTGGGATTCATTACAGGTTAGTTA  550

seq1  AAAGAAATTAACATAAATTGGCAACTGGTTTTCTAAATAGGAGTAGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTAACATAAATTGGCAACTGGTTTTCTAAATAGGAGTAGACAA  600

seq1  AAGAAAGAAGAAAAACGGTTGGTATGGGATTTAAAAAATCCATATAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGAAAAACGGTTGGTATGGGATTTAAAAAATCCATATAAAAA  650

seq1  GAAGTAATTCAAATGAAAATAAAACTAATTCAACAATAAAGATAAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATTCAAATGAAAATAAAACTAATTCAACAATAAAGATAAGTATT  700

seq1  GTCCTGTATTGCATTTAAATAGTTTCTGTAGAGAAACTGGTTGTTAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTATTGCATTTAAATAGTTTCTGTAGAGAAACTGGTTGTTAATCC  750

seq1  AATTATTTTATAATATTTTTACATGTAGTGAGACCCGTAGCTTTTGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTATAATATTTTTACATGTAGTGAGACCCGTAGCTTTTGCTAT  800

seq1  CTCCTCAAATAAGACAAATAGCCACCCAGCTTCTTTATACATTCACTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAAATAAGACAAATAGCCACCCAGCTTCTTTATACATTCACTGAC  850

seq1  AAAGTACTTTGAGACATATTCTTCAAATTTTAGTAGTAAACATTTTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTTGAGACATATTCTTCAAATTTTAGTAGTAAACATTTTTTTA  900

seq1  ATTTAAAATAAATTAGTCTCCCATACCATATGTCCTGACCAGGGTTTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATAAATTAGTCTCCCATACCATATGTCCTGACCAGGGTTTCCC  950

seq1  CTCCCTCCATTCTCCCTACTTCTTCCTAACCTTTCCTCCAAATTCAATTC  1000
      ||||||||||||| |||||||||||   |||||||   ||||||||  | 
seq2  CTCCCTCCATTCT-CCTACTTCTTC--TACCTTTC--TCAAATTCA--TT  993

seq1  CCTTCTCTTTACCTTCAGAAAAGTACAGGCCTACTAGAGACA  1042
      ||||||||||| ||||||||||||||| ||||||||||||||
seq2  CCTTCTCTTTA-CTTCAGAAAAGTACA-GCCTACTAGAGACA  1033