BAC Information

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BAC

Clone NameB6Ng01-288E06
Chromosome6 (Build37)
Map Location 63,787,328 - 63,928,979
singlet/doubletdoublet
Overlap geneGrid2
Upstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099
Downstream geneAtoh1, LOC100041833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288E06.bB6Ng01-288E06.g
ACCGA085975GA085976
length1,151545
definitionB6Ng01-288E06.b B6Ng01-288E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,787,328 - 63,787,929)(63,928,429 - 63,928,979)
sequence
gaattctttgtttagctcagtaccccaattttaatagggttatttggtta
tctggagtctaacttcttgacttctttttatctactggatattagccctc
tatcagacataggattggtaaaggttttttccccaatctgttggttggtg
ttttatcctattgagagtgtcctttgccttactgaagctttctaaacaat
cccataacacctaggaaaaaatagaagcagtcattaaaattctcccaacc
aaaaaaagcccaggaccagattggtctagtgcagatttctatcagatgtt
ccaagaaagcatagtaccaatactcttcaaactattccacaaaagagaaa
cagaaggaacactacccaattcattctataaagtcacagctacacttata
cctaaaccacacaaagacccaacaaaaaaaaaaccttcagaccaatttca
tttatgaatattggtgcaaaaatactcaataaaattcttgcaaactaaat
ccaagaaaacatcaaaatgatcatccatcatgatcaagtaggcttcatcc
cagagatgcaggcatggttccatatatagaaatccatcaatataatccac
taaataaacaaactcaaagataaaaaacacatgatcatctcattagatgt
tgagaaagcatttgacaaaattcaataccccctttatgataaaagtcttg
gaaagatcaggaattaaaggcccatacctaaacatagtaaaagcagtcta
cagcatattagtagccaacatcaaactaaatggagagaaacttaaaggaa
tcccactaaaatcaaggacaaaataaggcttcccactctctttctaccta
ttcagtatgttctccaagtcctagcaaaagtaattagacaacaaaaagag
gttaaagggatacaatttgaaaaggaaaaagtcaaatatcactattttgc
agatgataagatagtattacttaagtgaccccaaaaattccaccagagaa
tgccctaaatctgattaacacttcactaagtgaaatgtgattagctgtat
gatatgtacattgtattgggtatatgcaatgctatcccctgtcattacct
aaaccaaatgtatatataggtattcaattttgttggcctttaatttaagt
t
catattccattcatggtttggaaaaatacctccactggtcagttccaaag
aattaccagactctttgcaatgattagtttttcattgtaccttagaaggt
cactaaactgttgttatagaaaaaagaaagaaagaaagaaagaagaaagg
aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggtctataaaagaaaggcagactgcagaagaaaaattctaaactatcact
tcaatttgagaaagaatatttaatcctattaaaatttcaaggtcatagag
aatttattataatttagagcccaaatttacaaagtatactagttactgtt
ctattgctttgagaagacactatgataaaagcaactctcagaaagtgttt
aattaatgcttgcttacagcttttgaaggctggtccatgattatcaagct
gggaagaagagaggtatagcattggagctgtagctgtgatctttacacct
gatccaaaacaaccaggcaaaggaaaggggggggagagggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_63787328_63787929
seq2: B6Ng01-288E06.b_586_1198

seq1  TAGGCTTCATCCCAGAGATGCAGGCATGGTTCCATATATAGAAATCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTCATCCCAGAGATGCAGGCATGGTTCCATATATAGAAATCCATC  50

seq1  AATATAATCCACTAAATAAACAAACTCAAAGATAAAAAACACATGATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATCCACTAAATAAACAAACTCAAAGATAAAAAACACATGATCAT  100

seq1  CTCATTAGATGTTGAGAAAGCATTTGACAAAATTCAATACCCCCTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAGATGTTGAGAAAGCATTTGACAAAATTCAATACCCCCTTTATG  150

seq1  ATAAAAGTCTTGGAAAGATCAGGAATTAAAGGCCCATACCTAAACATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTCTTGGAAAGATCAGGAATTAAAGGCCCATACCTAAACATAGT  200

seq1  AAAAGCAGTCTACAGCATATTAGTAGCCAACATCAAACTAAATGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTCTACAGCATATTAGTAGCCAACATCAAACTAAATGGAGAGA  250

seq1  AACTTAAAGGAATCCCACTAAAATCAAGGACAAAATAAGGCTTCCCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAGGAATCCCACTAAAATCAAGGACAAAATAAGGCTTCCCACTC  300

seq1  TCTTTCTACCTATTCAGTATGTTCTCCAAGTCCTAGCAAAAGTAATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTACCTATTCAGTATGTTCTCCAAGTCCTAGCAAAAGTAATTAGA  350

seq1  CAACAAAAAGAGGTTAAAGGGATACAAATTGAAAAGGAAAAAGTCAAATA  400
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAACAAAAAGAGGTTAAAGGGATACAATTTGAAAAGGAAAAAGTCAAATA  400

seq1  TCACTA-TTTGCAGATGATAAGATAGTA-TACTTAAGTGACCCCAAAAAT  448
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  TCACTATTTTGCAGATGATAAGATAGTATTACTTAAGTGACCCCAAAAAT  450

seq1  TCCACCAGAGAATG-CCTAAATCTGATTAACAACTTCAACTAAGTG-AAT  496
      |||||||||||||| |||||||||||||||| ||||| |||||||| |||
seq2  TCCACCAGAGAATGCCCTAAATCTGATTAAC-ACTTC-ACTAAGTGAAAT  498

seq1  GTGATTAGCTGTATGATATGTACATTGTA-TGGGTATATGC-ATGCTTAT  544
      ||||||||||||||||||||||||||||| ||||||||||| |||||   
seq2  GTGATTAGCTGTATGATATGTACATTGTATTGGGTATATGCAATGCTATC  548

seq1  CTCTGT-ATATCTTAAACAAAATGTATATA---GTA-TCA--TTTGTTGG  587
      | |||| ||  | ||||| |||||||||||   ||| |||  ||||||||
seq2  CCCTGTCATTACCTAAACCAAATGTATATATAGGTATTCAATTTTGTTGG  598

seq1  CTTTTATTTTAAGTT  602
      | |||| ||||||||
seq2  CCTTTAATTTAAGTT  613

seq1: chr6_63928429_63928979
seq2: B6Ng01-288E06.g_69_619 (reverse)

seq1  CCTCTCCCTCTCCCCCCCCTTTCCTTTGCCTGGTTGTTTTGGATCAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTCTCCCCCCCCTTTCCTTTGCCTGGTTGTTTTGGATCAGGTG  50

seq1  TAAAGATCACAGCTACAGCTCCAATGCTATACCTCTCTTCTTCCCAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCACAGCTACAGCTCCAATGCTATACCTCTCTTCTTCCCAGCTT  100

seq1  GATAATCATGGACCAGCCTTCAAAAGCTGTAAGCAAGCATTAATTAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCATGGACCAGCCTTCAAAAGCTGTAAGCAAGCATTAATTAAACA  150

seq1  CTTTCTGAGAGTTGCTTTTATCATAGTGTCTTCTCAAAGCAATAGAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAGAGTTGCTTTTATCATAGTGTCTTCTCAAAGCAATAGAACAG  200

seq1  TAACTAGTATACTTTGTAAATTTGGGCTCTAAATTATAATAAATTCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTATACTTTGTAAATTTGGGCTCTAAATTATAATAAATTCTCTA  250

seq1  TGACCTTGAAATTTTAATAGGATTAAATATTCTTTCTCAAATTGAAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGAAATTTTAATAGGATTAAATATTCTTTCTCAAATTGAAGTGA  300

seq1  TAGTTTAGAATTTTTCTTCTGCAGTCTGCCTTTCTTTTATAGACCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGAATTTTTCTTCTGCAGTCTGCCTTTCTTTTATAGACCTTCCT  350

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTT  400

seq1  CTTCTTTCTTTCTTTCTTTCTTTTTTCTATAACAACAGTTTAGTGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTTTCTTTCTTTCTTTTTTCTATAACAACAGTTTAGTGACCTT  450

seq1  CTAAGGTACAATGAAAAACTAATCATTGCAAAGAGTCTGGTAATTCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTACAATGAAAAACTAATCATTGCAAAGAGTCTGGTAATTCTTTG  500

seq1  GAACTGACCAGTGGAGGTATTTTTCCAAACCATGAATGGAATATGGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGACCAGTGGAGGTATTTTTCCAAACCATGAATGGAATATGGAATT  550

seq1  C  551
      |
seq2  C  551