BAC Information

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BAC

Clone NameB6Ng01-288F11
Chromosome6 (Build37)
Map Location 109,428,044 - 109,429,222
singlet/doubletsinglet
Overlap genenone
Upstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288F11.bB6Ng01-288F11.g
ACCGA086029GA086030
length5401,192
definitionB6Ng01-288F11.b B6Ng01-288F11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgatctttccaaaacttttatcatgaatgggtgttggatcttgtcaaat
gctttttctgcatctaacgagatggtcatgtggtttttgtctttgagttt
gtttatataatggattacattgatggattttcgtatattaaaccatccct
gcatccctggaataaaacctacttggtcaggatggatgattgctttaatg
tgttcttggattcggttagcgagaattttattgaggatttttgcatcgat
attcataagagaaattggtctgaagttctctatctttgttggatctttct
gtggtttaggtatcagagtaatagtggcttcataaaatgagttgggtaga
gacctcctacttctattttgtaaatatttgggcagaattgaattagatct
ctttgaaggcctgatgaacttggcctaacccatctggcctgggctttttt
ggttggaaacttaataacgcttcatttcttagggattggaccgtttgtgg
caattgtccttatcacttggtcctggttctgccaaatttt

gaattcttcctcaaggtgatggaacataagctagagagtaacaataggaa
tcatttctgtcctgctgaagtcagaaacaatgctagtgcttaacatttgt
ttgtatggagtattcatgctaaggggctaagattgccctgggtacactct
caacactaagggataagatctctgcatgagtagcagtcaacattaggagt
tcaacagttaacattgttctgtctgaagcaggcaacattagggattcatt
ctctgggggaatagtcagttagtgctaatgttgccctgtggagagcagtc
agcactgctggttagcattgttgtgaatgagcagtcagcgttagtggcac
agtcagcattaggagccatccttgctctatagggaacagttagcatcagg
ctctatcctttccctgctgtgtttcttgctacatcagaggtgcctgctaa
cacaattaggtcaagaacagaattagagacataacaaatgtgtgaagatg
agagagactatcttttatttccagatgaaaagattagattattgaaaaac
ataaaaggattaacgctggaaataacaattcatctagtcattgggtacac
gtatgcatgtgcacgtgtacacatgcacacacacacaggcacacacacaa
acacacagagaggattttcataaatttagacaaaccttttcagaccaatt
cagaccaatgttctctctagtcagaactttttttttctgaaagaattatg
tttctagttgcagtaatgagtttagcacaactttcacaatatccttatgt
tacaagcgtgaccaaactgaaaggtcgctgagtagaaaggtaaactgaaa
tattccttgtcctttcttagcgacttcatgaaaatgggcatgatgtctat
tacaatgctaacaggtaggcttttcctttgctgcttgaacagtgcaatat
gttttacataggaaattaaaaagcattgacagactttggatgtgaaataa
actttcaataagaacagagtttgaccctgaaaacatgagcctgaaatatc
agcaggttgatcttaacaaggtctgaatagactgattaagttcttagata
cttcttgagaaaaagtcaggttcatgacttcaggaaccagccagaacatc
atttgaaagaaaaggcctgatacttctttactacttaatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109428044_109429222
seq2: B6Ng01-288F11.g_67_1258

seq1  GAATTCTTCCTCAAGGTGATGGAACATAAGCTAGAGAGTAACAATAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCAAGGTGATGGAACATAAGCTAGAGAGTAACAATAGGAA  50

seq1  TCATTTCTGTCCTGCTGAAGTCAGAAACAATGCTAGTGCTTAACATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTGTCCTGCTGAAGTCAGAAACAATGCTAGTGCTTAACATTTGT  100

seq1  TTGTATGGAGTATTCATGCTAAGGGGCTAAGATTGCCCTGGGTACACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGAGTATTCATGCTAAGGGGCTAAGATTGCCCTGGGTACACTCT  150

seq1  CAACACTAAGGGATAAGATCTCTGCATGAGTAGCAGTCAACATTAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAAGGGATAAGATCTCTGCATGAGTAGCAGTCAACATTAGGAGT  200

seq1  TCAACAGTTAACATTGTTCTGTCTGAAGCAGGCAACATTAGGGATTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTTAACATTGTTCTGTCTGAAGCAGGCAACATTAGGGATTCATT  250

seq1  CTCTGGGGGAATAGTCAGTTAGTGCTAATGTTGCCCTGTGGAGAGCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGGAATAGTCAGTTAGTGCTAATGTTGCCCTGTGGAGAGCAGTC  300

seq1  AGCACTGCTGGTTAGCATTGTTGTGAATGAGCAGTCAGCGTTAGTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGCTGGTTAGCATTGTTGTGAATGAGCAGTCAGCGTTAGTGGCAC  350

seq1  AGTCAGCATTAGGAGCCATCCTTGCTCTATAGGGAACAGTTAGCATCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCATTAGGAGCCATCCTTGCTCTATAGGGAACAGTTAGCATCAGG  400

seq1  CTCTATCCTTTCCCTGCTGTGTTTCTTGCTACATCAGAGGTGCCTGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCCTTTCCCTGCTGTGTTTCTTGCTACATCAGAGGTGCCTGCTAA  450

seq1  CACAATTAGGTCAAGAACAGAATTAGAGACATAACAAATGTGTGAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTAGGTCAAGAACAGAATTAGAGACATAACAAATGTGTGAAGATG  500

seq1  AGAGAGACTATCTTTTATTTCCAGATGAAAAGATTAGATTATTGAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACTATCTTTTATTTCCAGATGAAAAGATTAGATTATTGAAAAAC  550

seq1  ATAAAAGGATTAACGCTGGAAATAACAATTCATCTAGTCATTGGGTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGATTAACGCTGGAAATAACAATTCATCTAGTCATTGGGTACAC  600

seq1  GTATGCATGTGCACGTGTACACATGCACACACACACAGGCACACACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATGTGCACGTGTACACATGCACACACACACAGGCACACACACAA  650

seq1  ACACACAGAGAGGATTTTCATAAATTTAGACAAACCTTTTCAGACCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGAGGATTTTCATAAATTTAGACAAACCTTTTCAGACCAATT  700

seq1  CAGACCAATGTTCTCTCTAGTCAGAAC-TTTTTTTTCTGAAAGAATTATG  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGACCAATGTTCTCTCTAGTCAGAACTTTTTTTTTCTGAAAGAATTATG  750

seq1  TTTCTAGTTGCAGTAATGAGTTTAGCACAAC-TTCACAATATCCTTATGT  798
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCTAGTTGCAGTAATGAGTTTAGCACAACTTTCACAATATCCTTATGT  800

seq1  TACAAGCGTGACCAAACTGAAAGGTCGCTGAGTAGAAAGGTAAACTGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCGTGACCAAACTGAAAGGTCGCTGAGTAGAAAGGTAAACTGAAA  850

seq1  TATTCCTTGTCCTTTCTTAGCGACTTCATGAAAAT-GGCATGATGTCTAT  897
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATTCCTTGTCCTTTCTTAGCGACTTCATGAAAATGGGCATGATGTCTAT  900

seq1  TACAATGCTAACAGGTAGGCTTTTCCTTTGCTGCTTGAACAGTGCAATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGCTAACAGGTAGGCTTTTCCTTTGCTGCTTGAACAGTGCAATAT  950

seq1  GTTTTACATTAGGAAATTAAAAAGCATTGACAGACTTTGGGATGTGAAAT  997
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  GTTTTACA-TAGGAAATTAAAAAGCATTGACAGACTTT-GGATGTGAAAT  998

seq1  AAACTTTC-ATAAG-ACAGAGTTTGACCCTG-ATACATGAG-CTGAAATA  1043
      |||||||| ||||| |||||||||||||||| | ||||||| ||||||||
seq2  AAACTTTCAATAAGAACAGAGTTTGACCCTGAAAACATGAGCCTGAAATA  1048

seq1  TCAGCAGGGTGATCTT-ACAA-GTCTGGAAATAGACTTGATTAAG-TCTA  1090
      |||||||| ||||||| |||| |||||  ||||||| |||||||| ||| 
seq2  TCAGCAGGTTGATCTTAACAAGGTCTG--AATAGAC-TGATTAAGTTCTT  1095

seq1  GGATTACTGTTTGAGAAAAGGTCAG--TCAGTGACTTCAGGACCCAGGCA  1138
       || ||||  ||||||||| |||||  ||| ||||||||||| |||| ||
seq2  AGA-TACTTCTTGAGAAAAAGTCAGGTTCA-TGACTTCAGGAACCAGCCA  1143

seq1  G-ACATCATTGGAAA-AGAAAGCTTGAGTCTT------TACTTAATATC  1179
      | |||||||| |||| | || || |||  |||      |||||||||||
seq2  GAACATCATTTGAAAGAAAAGGCCTGATACTTCTTTACTACTTAATATC  1192


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