BAC Information

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BAC

Clone NameB6Ng01-288K07
Chromosome6 (Build37)
Map Location 14,478,293 - 14,479,572
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
Downstream genePpp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288K07.bB6Ng01-288K07.g
ACCGA086255GA086256
length7771,053
definitionB6Ng01-288K07.b B6Ng01-288K07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcttaggcaaatggatagaactagaaaatatcctgag
tgaggtaacccaatcccagaagaacacacatggtatgcactcactgataa
ctggatattagcccaaaagctccacataaccactatacaattcacatacc
acatgaagcttaataagaaggaagaccaaagtgtggatgcttcagtcctt
cttaggagaacaaaatacacacaggaacaaatatggagataaagtgttaa
gcagagactgaaggaaaggccacccagagactgtcccacctgggtattta
tcccatatacatttacagacattactgtggatgccaagaagtgcatactg
aaaggtctcctgagaggccctgccagagccttacaaatacagaggctgat
gttcacagccaaccattggactgagcaaggaattcacaatagaggagtta
gagaaaagactgaaggagttgaaggggtttgcaaccccataggaagaaca
acaatatcaacaaccagaccccccagaactcccagggactaagctaccga
caaagaagtacacatggctctagctgcatatgtagcagaaaatggccttg
tcatacatcagtggtaggagaggtccttggtcctgtgaaggctcaataga
ttccccagagtaggggaatcgagggtgggaaggtgggtagaggaagatcc
tcatagaagcagggtgagggaggctatgttagggtgtttctgggagggag
ggaatactgggaaaggggatagctttt

gaattcaaacagtacatggtcaaatatccagataaatttgatgaatttga
gttgcctgtggtttggaaatgtaatcaacctaattcagccaatggatttc
cccacaaagcaaaatcacaaacaaacaaacaaacaaacaaacaatttctc
ttttaatgtagaagcagttctcgggctctggattgctagcttgtttgagg
cttttgatgtggctgggtcagaaacatcatagtattctcctgtcaactat
cacatttctccagtgcagcatcaggttactctgggcagggaatggcctgt
tggatgttgacagctccatcactgccagcaatcttataatagctaaagga
ttcaaacagtaacctttttatttagcattgaaaaagactgcctgaaaccc
aaagcttgggaaacatcaaaaagggtttcccataggtccaagatttagtt
cgggtttatttaaatgtattaactattgtgttttttaaaaatctgaagaa
gtagctgactacagcaagcccattgtttacaatcactaataaccgtgaac
aatcctaagtttaaaacacccagtcaactgttttgtcacctgcctaaaat
ctaagcaatggcaatctgatgacttggggatgaaaagggacccttttatg
actggccgtataaaagcgacaagaagaaattagcagtaaaggcttttcag
aaatgggtggcctctcgggtataactaaatgacccctgagaatcagacag
tgtacttcaatacttgaacaccatgcattgttgggttatttcagacgtga
caagtaatgtgttgtttagttgcacccacgttcaccattaaatgcatcac
agtgtggcacagattcagcaagttttagtcataacatgccagctggagaa
tattaaagggggaaaatccgttttcaatttctgcttaatgttctggtgaa
aataatcctagtcacatctgtgaagatatttaccctctaagttggtagga
cgactgctcagtgtataggagctaaaataggaattcccaggatggtggtc
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14478293_14479572
seq2: B6Ng01-288K07.g_68_1120 (reverse)

seq1  AATGACCACCATGAGGCTGTCACAGACACAGAATGTGAAGGGAAATAATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAAATGCATGGTGTTTGTCCAATTCTTGCCTACAAAGACACTTTTGTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCCAGTAAACCTCGCAAATGTCAGGTGAAGGTTAATTAGCTATAAGTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGGAAGGCATTGGAAGTTACGTGCATCAATGAAGAGTAAGAAGGGAAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTGAAACTGAATAAGAAAGAGTGAATACCAAATGACCACATTCCTGGAAA  250
                                    |||||||||  |||||| ||
seq2  ------------------------------AATGACCACCATCCTGGGAA  20

seq1  TT-CTATTTTAGCTCCTATACACTGAGCAGTCGTCCTACC-ACTTAGAGG  298
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCCTATTTTAGCTCCTATACACTGAGCAGTCGTCCTACCAACTTAGAGG  70

seq1  GTAAATATCTTCACAGATGTGACTAGGATTATTTTCACCAGAACATTAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATCTTCACAGATGTGACTAGGATTATTTTCACCAGAACATTAAG  120

seq1  CAGAAATTGAAAACGGATTTTCCCCC-TTAATATTCTCCAGCTGGCATGT  397
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGAAATTGAAAACGGATTTTCCCCCTTTAATATTCTCCAGCTGGCATGT  170

seq1  TATGACTAAAACTTGCTGAATCTGTGCCACACTGTGATGCATTTAATGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTAAAACTTGCTGAATCTGTGCCACACTGTGATGCATTTAATGGT  220

seq1  GAACGTGGGTGCAACTAAACAACACATTACTTGTCACGTCTGAAATAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTGGGTGCAACTAAACAACACATTACTTGTCACGTCTGAAATAACC  270

seq1  CAACAATGCATGGTGTTCAAGTATTGAAGTACACTGTCTGATTCTCAGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGCATGGTGTTCAAGTATTGAAGTACACTGTCTGATTCTCAGGG  320

seq1  GTCATTTAGTTATACCCGAGAGGCCACCCATTTCTGAAAAGCCTTTACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTAGTTATACCCGAGAGGCCACCCATTTCTGAAAAGCCTTTACTG  370

seq1  CTAATTTCTTCTTGTCGCTTTTATACGGCCAGTCATAAAAGGGTCCCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCTTCTTGTCGCTTTTATACGGCCAGTCATAAAAGGGTCCCTTT  420

seq1  TCATCCCCAAGTCATCAGATTGCCATTGCTTAGATTTTAGGCAGGTGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCAAGTCATCAGATTGCCATTGCTTAGATTTTAGGCAGGTGACA  470

seq1  AAACAGTTGACTGGGTGTTTTAAACTTAGGATTGTTCACGGTTATTAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTGACTGGGTGTTTTAAACTTAGGATTGTTCACGGTTATTAGTG  520

seq1  ATTGTAAACAATGGGCTTGCTGTAGTCAGCTACTTCTTCAGATTTTTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAACAATGGGCTTGCTGTAGTCAGCTACTTCTTCAGATTTTTAAA  570

seq1  AAACACAATAGTTAATACATTTAAATAAACCCGAACTAAATCTTGGACCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATAGTTAATACATTTAAATAAACCCGAACTAAATCTTGGACCT  620

seq1  ATGGGAAACCCTTTTTGATGTTTCCCAAGCTTTGGGTTTCAGGCAGTCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAACCCTTTTTGATGTTTCCCAAGCTTTGGGTTTCAGGCAGTCTT  670

seq1  TTTCAATGCTAAATAAAAAGGTTACTGTTTGAATCCTTTAGCTATTATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGCTAAATAAAAAGGTTACTGTTTGAATCCTTTAGCTATTATAA  720

seq1  GATTGCTGGCAGTGATGGAGCTGTCAACATCCAACAGGCCATTCCCTGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTGGCAGTGATGGAGCTGTCAACATCCAACAGGCCATTCCCTGCC  770

seq1  CAGAGTAACCTGATGCTGCACTGGAGAAATGTGATAGTTGACAGGAGAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAACCTGATGCTGCACTGGAGAAATGTGATAGTTGACAGGAGAAT  820

seq1  ACTATGATGTTTCTGACCCAGCCACATCAAAAGCCTCAAACAAGCTAGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATGTTTCTGACCCAGCCACATCAAAAGCCTCAAACAAGCTAGCA  870

seq1  ATCCAGAGCCCGAGAACTGCTTCTACATTAAAAGAGAAATTGTTTGTTTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGCCCGAGAACTGCTTCTACATTAAAAGAGAAATTGTTTGTTTG  920

seq1  TTTGTTTGTTTGTTTGTGATTTTGCTTTGTGGGGAAATCCATTGGCTGAA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTGATTTTGCTTTGTGGGGAAATCCATTGGCTGAA  970

seq1  TTAGGTTGATTACATTTCCAAACCACAGGCAACTCAAATTCATCAAATTT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTGATTACATTTCCAAACCACAGGCAACTCAAATTCATCAAATTT  1020

seq1  ATCTGGATATTTGACCATGTACTGTTTGAATTC  1280
      |||||||||||||||||||||||||||||||||
seq2  ATCTGGATATTTGACCATGTACTGTTTGAATTC  1053


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