BAC Information

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BAC

Clone NameB6Ng01-288K10
Chromosome6 (Build37)
Map Location 82,386,769 - 82,523,583
singlet/doubletdoublet
Overlap geneTacr1
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198
Downstream genePole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288K10.bB6Ng01-288K10.g
ACCGA086261GA086262
length869852
definitionB6Ng01-288K10.b B6Ng01-288K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,522,718 - 82,523,583)(82,386,769 - 82,387,616)
sequence
gaattcagattgtcagtcttggtggtaggtggctttacctgtggagctcc
ctgctttgttccattcttttgttttattttgttttgtttttgttttttga
gacagggtttctctgcatggccctggctgtcctggaactcactctgtaga
ccaggctgacctcgaactcagaaatctgcctgcctctgcctcccaagtgc
tgggattaaaggcttgttccatcctttatagtgcgtttcaggagcctcgg
agaatgggtatcttcagaaccatggcacaggcttttcaaagcctggtccc
agaatcagaatcagttctatggtttgtcagggtttggaggtccctttcgg
agcctgctgactcacactgtccagggaatctacactagtctacgctcaca
gagtgtggcgtgacctctggccacagccacagtagacctcactctctgct
tctcagaaaattgaaacgatcatctggggaggcttttctgacagtttgct
gtggcgccaccttcaccctttgtttcctctgctccctctgtgctctgcac
agcagcatcctgctttcccagaaacgcttggccaagagttcttgtctttc
cctcctggaaactcaactgctgtctctagagtcatccccacaggcaagga
agcaagttcaagacttggccagcaaatgcaaattaaaatcccttccttgg
ttctatactccctttaagttactgtgctattttcaaataattctctattt
ttctttttttctttattgctaagatatggccttgctattattgctctggt
tgacctagaaatcacaatatcgaccaggctgacctcaaaactcacagaat
ttgagagtccacagagagc
gaattctggtcagtcaataaagattcccaaactgatttcctaaaatccag
tgcttatttggctcttccacgtgccctgtccctgatggtaggcatgagaa
cagaatctgcagttaataatgaaactgcaccagcccatagccatgtagtt
tcccaaggagacatcttaatgagatccctagttactataaaatttaccag
cggggagaattggtgtagttaaagtagcaaaaggaatggttttcccctgc
tgtggattcagggtgtgcaggggggccttttatctaactatccttccacc
gtcaccccttagtatctacagacatgggacgggattagcatgatatgatt
ccattggatgccaacacacagatgccatttttgggaccccaacaggggat
tctggtggaacattcagagaaggaattgcagaagtctaagagggtcgggc
attctagtagctgatgcaagaaagtgccctggtttgggagcagtcttctg
gagtgggcgaggactggaggcaagggaaggcatgcttccttcctgaagtg
cagtgttgtaattagcccacaccagggagagagagtaggcacccacactt
tgtttagcacttcaggctgtctcctcaggggagactgcctactgtgatgt
gagggtgggggtggaacagggtgaaatggctcattacagaacagttcttt
acatgggagtgggaagctctaatgtctgcttttctctctgcttaagaatg
tggttgatcgttaccaagtcaaagggatgttctgtttccggtgaagaaga
gagtatgatgaatagtctctcaaggttaatagagtagaataattgttgca
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_82522718_82523583
seq2: B6Ng01-288K10.b_45_913 (reverse)

seq1  GCTCTCTGTGGACTCTCAAATTCTGTGAG-TTTGAGGTCAGCCTGGTCGA  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTCTCTGTGGACTCTCAAATTCTGTGAGTTTTGAGGTCAGCCTGGTCGA  50

seq1  TATTGTGATTTCTAGGTCAACCAGAGCAATAATAGCAAGGCCATATCTTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGATTTCTAGGTCAACCAGAGCAATAATAGCAAGGCCATATCTTA  100

seq1  GCAATAAAGAAAAAAAG-AAAATAGAGAATTATTTGAAAATAGCACAGTA  148
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCAATAAAGAAAAAAAGAAAAATAGAGAATTATTTGAAAATAGCACAGTA  150

seq1  AC-TAAAGGGAGTATAGAACCAAGGAAGGGATTTTAATTTGCATTTGCTG  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGGGAGTATAGAACCAAGGAAGGGATTTTAATTTGCATTTGCTG  200

seq1  GCCAAGTCTTGAACTTGCTTCCTTGCCTGTGGGGATGACTCTAGAGACAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCTTGAACTTGCTTCCTTGCCTGTGGGGATGACTCTAGAGACAG  250

seq1  CAGTTGAGTTTCCAGGAGGGAAAGACAAGAACTCTTGGCCAAGCGTTTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGTTTCCAGGAGGGAAAGACAAGAACTCTTGGCCAAGCGTTTCT  300

seq1  GGGAAAGCAGGATGCTGCTGTGCAGAGCACAGAGGGAGCAGAGGAAACAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGCAGGATGCTGCTGTGCAGAGCACAGAGGGAGCAGAGGAAACAA  350

seq1  AGGGTGAAGGTGGCGCCACAGCAAACTGTCAGAAAAGCCTCCCCAGATGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAAGGTGGCGCCACAGCAAACTGTCAGAAAAGCCTCCCCAGATGA  400

seq1  TCGTTTCAATTTTCTGAGAAGCAGAGAGTGAGGTCTACTGTGGCTGTGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTCAATTTTCTGAGAAGCAGAGAGTGAGGTCTACTGTGGCTGTGGC  450

seq1  CAGAGGTCACGCCACACTCTGTGAGCGTAGACTAGTGTAGATTCCCTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCACGCCACACTCTGTGAGCGTAGACTAGTGTAGATTCCCTGGA  500

seq1  CAGTGTGAGTCAGCAGGCTCCGAAAGGGACCTCCAAACCCTGACAAACCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGAGTCAGCAGGCTCCGAAAGGGACCTCCAAACCCTGACAAACCA  550

seq1  TAGAACTGATTCTGATTCTGGGACCAGGCTTTGAAAAGCCTGTGCCATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGATTCTGATTCTGGGACCAGGCTTTGAAAAGCCTGTGCCATGG  600

seq1  TTCTGAAGATACCCATTCTCCGAGGCTCCTGAAACGCACTATAAAGGATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGATACCCATTCTCCGAGGCTCCTGAAACGCACTATAAAGGATG  650

seq1  GAACAAGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCT  700

seq1  GAGTTCGAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  750

seq1  CATGCAGAGAAACCCTGTCTCAAAAAACAAAAACAAAACAAAATAAAACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAGAAACCCTGTCTCAAAAAACAAAAACAAAACAAAATAAAACA  800

seq1  AAAGAATGGAACAAAGCAGGGAGCTCCACAGGTAAAGCCACCTACCACCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGAACAAAGCAGGGAGCTCCACAGGTAAAGCCACCTACCACCA  850

seq1  AGACTGACAATCTGAATTC  866
      |||||||||||||||||||
seq2  AGACTGACAATCTGAATTC  869

seq1: chr6_82386769_82387616
seq2: B6Ng01-288K10.g_71_922

seq1  GAATTCTGGTCAGTCAATAAAGATTCCCAAACTGATTTCCTAAAATCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCAGTCAATAAAGATTCCCAAACTGATTTCCTAAAATCCAG  50

seq1  TGCTTATTTGGCTCTTCCACGTGCCCTGTCCCTGATGGTAGGCATGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTTGGCTCTTCCACGTGCCCTGTCCCTGATGGTAGGCATGAGAA  100

seq1  CAGAATCTGCAGTTAATAATGAAACTGCACCAGCCCATAGCCATGTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTGCAGTTAATAATGAAACTGCACCAGCCCATAGCCATGTAGTT  150

seq1  TCCCAAGGAGACATCTTAATGAGATCCCTAGTTACTATAAAATTTACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGAGACATCTTAATGAGATCCCTAGTTACTATAAAATTTACCAG  200

seq1  CGGGGAGAATTGGTGTAGTTAAAGTAGCAAAAGGAATGGTTTTCCCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGAATTGGTGTAGTTAAAGTAGCAAAAGGAATGGTTTTCCCCTGC  250

seq1  TGTGGATTCAGGGTGTGCAGGGGGGCCTTTTATCTAACTATCCTTCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTCAGGGTGTGCAGGGGGGCCTTTTATCTAACTATCCTTCCACC  300

seq1  GTCACCCCTTAGTATCTACAGACATGGGACGGGATTAGCATGATATGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCCTTAGTATCTACAGACATGGGACGGGATTAGCATGATATGATT  350

seq1  CCATTGGATGCCAACACACAGATGCCATTTTTGGGACCCCAACAGGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGATGCCAACACACAGATGCCATTTTTGGGACCCCAACAGGGGAT  400

seq1  TCTGGTGGAACATTCAGAGAAGGAATTGCAGAAGTCTAAGAGGGTCGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGAACATTCAGAGAAGGAATTGCAGAAGTCTAAGAGGGTCGGGC  450

seq1  ATTCTAGTAGCTGATGCAAGAAAGTGCCCTGGTTTGGGAGCAGTCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTAGCTGATGCAAGAAAGTGCCCTGGTTTGGGAGCAGTCTTCTG  500

seq1  GAGTGGGCGAGGACTGGAGGCAAGGGAAGGCATGCTTCCTTCCTGAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGCGAGGACTGGAGGCAAGGGAAGGCATGCTTCCTTCCTGAAGTG  550

seq1  CAGTGTTGTAATTAGCCCACACCAGGGAGAGAGAGTAGGCACCCACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGTAATTAGCCCACACCAGGGAGAGAGAGTAGGCACCCACACTT  600

seq1  TGTTTAGCACTTCAGGCTGTCTCCTCAGGGGAGACTGCCTACTGTGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCACTTCAGGCTGTCTCCTCAGGGGAGACTGCCTACTGTGATGT  650

seq1  GAGGGTGGGGGTGGAACAGGGTGAAATGGCTCATTACAGAACAGTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGGGGTGGAACAGGGTGAAATGGCTCATTACAGAACAGTTCTTT  700

seq1  ACATGGGAGTGGGAAGCTCTAATGTCTGC-TTTCTCTCTGCTTAAGAATG  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACATGGGAGTGGGAAGCTCTAATGTCTGCTTTTCTCTCTGCTTAAGAATG  750

seq1  TGGTTTGATCGTTACCAAGTC-AAGGGATGTTCTGTTT-CGGTGAAGAAG  797
      ||| ||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TGG-TTGATCGTTACCAAGTCAAAGGGATGTTCTGTTTCCGGTGAAGAAG  799

seq1  AGAGTATGATGAATAGTCTCTCAA-GTTAAAAGAGTAG-ATAATTGTTGC  845
      |||||||||||||||||||||||| ||||| ||||||| |||||||||||
seq2  AGAGTATGATGAATAGTCTCTCAAGGTTAATAGAGTAGAATAATTGTTGC  849

seq1  ATA  848
      |||
seq2  ATA  852