BAC Information

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BAC

Clone NameB6Ng01-288O10
Chromosome6 (Build37)
Map Location 79,190,683 - 79,191,821
singlet/doubletsinglet
Overlap genenone
Upstream genePap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288O10.bB6Ng01-288O10.g
ACCGA086446GA086447
length1,1411,160
definitionB6Ng01-288O10.b B6Ng01-288O10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattttattttctgtattttacctttggattgtattctcattttt
ttcttaaaaatattctctgtaactattgatttaaaaaaaaacacatattc
tctttgttttctacttttcacattcatgtttgtagtaagttttgaaagcc
tgtaaggtagattagcaggtaaaggctcttgttgccaagcctgattcttt
gtgtttgatcacagagttccacataggagaagtagagaaccaactcctac
aaactgtctctgagctccccatgcatgccatgacccatacgtgtgcatgc
atctcccccaccctacacatacatacatatctgtacacatcctaatacac
tcacacttgtaactcttttattccctgtccttatttcccttcatttcatc
tattgttaacttatatgatatttttttatattttatgttgataactcata
tttactacttgtgttggtcatgcagaatctgattataatgggaaggttcc
tttggcttagagattttcatcctatctgatcccataggcaggtttttata
ctcttatcactttattcttggtgcataaagtaagaactcagtttgtgtca
atactggagaaaatccaacatctgtccaataaagcccaagagaatctacc
aattgattaaagtgacattttagtttgagtgtttgtaatttttaaaggac
tcttcataattagctgaaaattctgcccttctttggaattactctttaag
gcgaatactttgaaatctaagggtctattttctgcttgcacactgaatga
tgtggccatgtgattgttgctaaaatgccctttttctcccaagttaccaa
tgataaatggataaacccaaggtgcaattctgccaaagttcattttggaa
aaccagcaaattgattgagcttccttatagtttgtagaaaggaatggttt
agaaagttatgggtgctcctttcctgaaggctattatctgtaagtttctt
gaacagggatgagaaccttcccgtactattttgtgtgaagcctcctcttc
tattagtacccagattacactgtagttccacttgataggtgtcttacaat
tatgccacagtttgtgcacaacatattggagagagcagctg
gaattctcacctgagcgcaataccgaatggcagagaagcacctgaaaaaa
tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
attccacctcacaccagtgagaatggctaagatcaaaaattcaggtgaca
gcagatgctggcgaggatgtggagaaagaggaacactcctacattgttgg
tgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcct
cagaaaattggacatagtactaccggaggatccagcaatacctctcctgg
gcatgtatccagaagaagccccaactggtaagaaggacacatgctccact
atgttcatagcagccttatttataatagccagaaactggaaagaacccag
atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaattcctagcc
aaatggatggacctggagagcatcatcctgagtgaggtaacacaatcaca
aaggaactcacacaatatgtactcactgataagtggatactagcccaaaa
cctaggatacccacaatataagatacaatttcctaaacacatgaaactca
agaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggg
aacaaaacacccatggaaggagttacagaaacaaagtatggagctgagat
gaaaggatggaccatgtagagactgccatatccagggatccaccccataa
tcagcttccaaatgctgacaccattgcatacactagcaagattttactga
aaggacccagatgtagctgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgctcacagtcagctaatggatggatcacagggctcc
caatggagagctagagaaagtacccaaagagctaaagggatctcaaccta
tagtggacacattatgaactaaccagtacccctgagctcttgacctctag
ctgcataatgtatcaaaggatgctagtcgccattcactggaagaagccca
tgacacgcagacctgtgccggtacaagtacgcatgcaaagcgagaagtgt
gatgtgctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79190683_79191821
seq2: B6Ng01-288O10.b_49_1189 (reverse)

seq1  CAGCTGCTCTCTTCTATATGTTGTGCAC-AACTGTGCCTTAATTGTAAGA  49
      |||||||||||| | ||||||||||||| ||||||| | |||||||||||
seq2  CAGCTGCTCTCTCCAATATGTTGTGCACAAACTGTGGCATAATTGTAAGA  50

seq1  CAACTTATC-AGTGGAACTACAGTGTTAATTCTGGGTAACTAATAG-AGA  97
      | || |||| ||||||||||||||||  | ||||||| |||||||| |||
seq2  C-ACCTATCAAGTGGAACTACAGTGT--AATCTGGGT-ACTAATAGAAGA  96

seq1  G--AGCTTCACACAAAATAGTACGGGAAGGTTCTCATCCCTGTTCAAGAA  145
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTCACACAAAATAGTACGGGAAGGTTCTCATCCCTGTTCAAGAA  146

seq1  ACTTTACAGAT-ATAGCCTTCAGGAAAGGAGCACCCATAACTTTCTAAAC  194
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AC-TTACAGATAATAGCCTTCAGGAAAGGAGCACCCATAACTTTCTAAAC  195

seq1  CATTCCTTTCTACAAACTATAAGGAAGCTCAATCAATTTGCTGGTTTTCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTCTACAAACTATAAGGAAGCTCAATCAATTTGCTGGTTTTCC  245

seq1  AAAATGAACTTTGGCAGAATTGCACCTT-GGTTTATCCATTTATCATTGG  293
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAATGAACTTTGGCAGAATTGCACCTTGGGTTTATCCATTTATCATTGG  295

seq1  TAACTTGGGAGAAAAAGGGCATTTTAGCAACAATCACATGGCCACATCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGGGAGAAAAAGGGCATTTTAGCAACAATCACATGGCCACATCAT  345

seq1  TCAGTGTGCAAGCAGAAAATAGACCCTTAGATTTCAAAGTATTCGCCTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGCAAGCAGAAAATAGACCCTTAGATTTCAAAGTATTCGCCTTA  395

seq1  AAGAGTAATTCCAAAGAAGGGCAGAATTTTCAGCTAATTATGAAGAGTCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAATTCCAAAGAAGGGCAGAATTTTCAGCTAATTATGAAGAGTCC  445

seq1  TTTAAAAATTACAAACACTCAAACTAAAATGTCACTTTAATCAATTGGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTACAAACACTCAAACTAAAATGTCACTTTAATCAATTGGTA  495

seq1  GATTCTCTTGGGCTTTATTGGACAGATGTTGGATTTTCTCCAGTATTGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTTGGGCTTTATTGGACAGATGTTGGATTTTCTCCAGTATTGAC  545

seq1  ACAAACTGAGTTCTTACTTTATGCACCAAGAATAAAGTGATAAGAGTATA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGAGTTCTTACTTTATGCACCAAGAATAAAGTGATAAGAGTATA  595

seq1  AAAACCTGCCTATGGGATCAGATAGGATGAAAATCTCTAAGCCAAAGGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGCCTATGGGATCAGATAGGATGAAAATCTCTAAGCCAAAGGAA  645

seq1  CCTTCCCATTATAATCAGATTCTGCATGACCAACACAAGTAGTAAATATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCATTATAATCAGATTCTGCATGACCAACACAAGTAGTAAATATG  695

seq1  AGTTATCAACATAAAATATAAAAAAATATCATATAAGTTAACAATAGATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCAACATAAAATATAAAAAAATATCATATAAGTTAACAATAGATG  745

seq1  AAATGAAGGGAAATAAGGACAGGGAATAAAAGAGTTACAAGTGTGAGTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGGGAAATAAGGACAGGGAATAAAAGAGTTACAAGTGTGAGTGT  795

seq1  ATTAGGATGTGTACAGATATGTATGTATGTGTAGGGTGGGGGAGATGCAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGATGTGTACAGATATGTATGTATGTGTAGGGTGGGGGAGATGCAT  845

seq1  GCACACGTATGGGTCATGGCATGCATGGGGAGCTCAGAGACAGTTTGTAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGTATGGGTCATGGCATGCATGGGGAGCTCAGAGACAGTTTGTAG  895

seq1  GAGTTGGTTCTCTACTTCTCCTATGTGGAACTCTGTGATCAAACACAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGTTCTCTACTTCTCCTATGTGGAACTCTGTGATCAAACACAAAG  945

seq1  AATCAGGCTTGGCAACAAGAGCCTTTACCTGCTAATCTACCTTACAGGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCTTGGCAACAAGAGCCTTTACCTGCTAATCTACCTTACAGGCT  995

seq1  TTCAAAACTTACTACAAACATGAATGTGAAAAGTAGAAAACAAAGAGAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACTTACTACAAACATGAATGTGAAAAGTAGAAAACAAAGAGAAT  1045

seq1  ATGTGTTTTTTTTTAAATCAATAGTTACAGAGAATATTTTTAAGAAAAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTTTTTTAAATCAATAGTTACAGAGAATATTTTTAAGAAAAAA  1095

seq1  ATGAGAATACAATCCAAAGGTAAAATACAGAAAATAAAATGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATACAATCCAAAGGTAAAATACAGAAAATAAAATGAATTC  1141