BAC Information

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BAC

Clone NameB6Ng01-290I24
Chromosome6 (Build37)
Map Location 19,856,715 - 19,964,597
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290I24.bB6Ng01-290I24.g
ACCGA087676GA087677
length1,182847
definitionB6Ng01-290I24.b B6Ng01-290I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,963,396 - 19,964,597)(19,856,715 - 19,857,561)
sequence
gaattcacagcacacaaacatattggtgcatttctctctatggaaccatg
acaaatggagctcaacaactcatgtaaagcagaccaatacatgtctgtca
atagccaagaatccatcatcatgtgtcctttcatgtgcttgctttagcaa
aataacctttcatctgtttctgcttcagtgaaatgttccttcacaagttt
gccccagcaaaacatcatccaatataactgattttccaaaatatccttaa
atttctacttcatgatcccaaagtatagaacagtccatagtttctaaagt
aaattacattagtgaataaatatatttctgcaaaaacaaaaacaaaaaat
tattcttttttttccctatggggccacaaacttcaaagcccatatgttca
attgaattctagtatttctgtagattccaatctcactgacctctgacata
taattgttttctccataaggcgatataatacaacccatgcttggttttct
agagttgcccatgctctaacctaatttaatgaattgaagaggaatagttt
tgatgtcatcaacctgaatgatgatttccttttagaaaagacaatgaagt
aatctgtgtacaggtttttcaatgaatcaacaaagtaaatgttaagcatg
cagtacagtatgttactattccatcttaacttcccttgtgaattaaagca
attaggaagctgaatgattgttaaattggcaggcttaaactactctcaaa
atcaaacaagatactttacttggaatataattaagaaaatatattagttg
tcattttcttaaggtcattttagtactttatctggacttggttttataaa
gaaaatccatgatttaaattttgaggacttatggtgatcaagaatacgga
aacagttttaattttcttttctttcatcttaaaaaaaaaaaagaaggaaa
tgaaagaaaatctgtaatttgtattgcagagagagctgtgtgtgaataag
ttttaaatcatgtgctagctctgcccattatttagcagtccagggagtac
aacagtactcaaagggatttattatggcagtgtttaaaaatctagatgta
tatgttttctccaagatactggaaagttcattgcagctgtgcttaacttc
aggcagaagtgacgaaatcctttaaaaatgtg

gaattcttttagaaatgaaccagatggattgtgattaaaggcttaaaaga
atgttaaaggaatcttatgtacatgtgtgggatgtgaacatgtgcaagtg
aagcacatggtgcaatgggaggtatcactgaaatccatgaattcttgggt
agagacgatattagtatggtcaaaattgagaaagtgggaatgggtgggag
gagaaccctcatagaggtctgggaaaggggatttctgaagaggagacctg
gaaatgtgaaaacatttgaaatgtaaataaagaaaatatagaagaaaaac
aatttagaaagttgtaggtaggtcagatactgagagttcaaattataatt
attttgtgcacagttttattagtacatttcaggtagttgtatgtctgcat
ttactgaaaagttagtggtacttatcaatccaaaagaagagctgaaggga
aaatctgtagaaagagcttacaacttactagtttagacaagcgatatgca
tcgttgtatacatagataaaggctgtttcataacacaaaggaccttgtag
taagagtggaaatgctcttctctgctcactcttctgcaacagaagaaatc
tacatgcctacagagagtgaagtagcccaaactttggtgttttgttttgt
tttaacatatgacctgccaatgagttgtaactcttgaaacactctgtctg
attgacatgacactgacagttcccataatatataaatcataccacatcct
ccttgaagtattcaccactctttcaatacagaagaatccttcaatagcac
tgtggtggtttgaaaaagaatgacctaagagactctgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19963396_19964597
seq2: B6Ng01-290I24.b_49_1230 (reverse)

seq1  CACATTTTTAAAGGATTTTTGGTAAACTCTGCGTGAAGATTAAGCACAGC  50
      |||||||||||||||  ||| || |  ||||| ||||| |||||||||||
seq2  CACATTTTTAAAGGA--TTTCGTCACTTCTGCCTGAAG-TTAAGCACAGC  47

seq1  TTGCATATGGACTTT-CAGTTTATCCTTGAAGAAACATATTACATCTTAA  99
       |||| ||| ||||| |||  |||| | ||  ||||||| |||||||  |
seq2  -TGCA-ATGAACTTTCCAG--TATCTTGGAGAAAACATA-TACATCT--A  90

seq1  GATTTTTTAAACACTGCCATATAAATTCCCTTTTGGAGGTACTGTTGGTT  149
      || ||||||||||||||||||  || |||||||  || |||||||||  |
seq2  GA-TTTTTAAACACTGCCATAATAAATCCCTTT--GA-GTACTGTTG--T  134

seq1  ACTCCCTGGACTGCTTAAATAATTGGGCAGAGCTAGCACATGATTTAAAA  199
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  ACTCCCTGGACTGC-TAAATAA-TGGGCAGAGCTAGCACATGATTTAAAA  182

seq1  CCTTATTCACAACACAGCTCTCTCTGCAATACAAATTACAGATTTTTCTT  249
       ||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  -CTTATTCAC-ACACAGCTCTCTCTGCAATACAAATTACAGA-TTTTCTT  229

seq1  TCATTTCCTTC-TTTTTTTTTTTAAGATGAAAGAAAAGAAAATTAAAACT  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTTCTTTTTTTTTTTTAAGATGAAAGAAAAGAAAATTAAAACT  279

seq1  GTTTCCGTATTCTTGATCACCATAAGTCCTCAAAATTTAAATCATGGATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCGTATTCTTGATCACCATAAGTCCTCAAAATTTAAATCATGGATT  329

seq1  TTCTTTATAAAACCAAGTCCAGATAAAGTACTAAAATGACCTTAAGAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATAAAACCAAGTCCAGATAAAGTACTAAAATGACCTTAAGAAAA  379

seq1  TGACAACTAATATATTTTCTTAATTATATTCCAAGTAAAGTATCTTGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTAATATATTTTCTTAATTATATTCCAAGTAAAGTATCTTGTTT  429

seq1  GATTTTGAGAGTAGTTTAAGCCTGCCAATTTAACAATCATTTCAGCTTCC  498
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATTTTGAGAGTAGTTTAAGCCTGCCAATTTAACAATCA-TTCAGCTTCC  478

seq1  TAATTGCTTTAATTCACAAGGGAAGTTAAGATGGAATAGTAACATACTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTTTAATTCACAAGGGAAGTTAAGATGGAATAGTAACATACTGT  528

seq1  ACTGCATGCTTAACATTTACTTTGTTGATTCATTGAAAAACCTGTACACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGCTTAACATTTACTTTGTTGATTCATTGAAAAACCTGTACACA  578

seq1  GATTACTTCATTGTCTTTTCTAAAAGGAAATCATCATTCAGGTTGATGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTCATTGTCTTTTCTAAAAGGAAATCATCATTCAGGTTGATGAC  628

seq1  ATCAAAACTATTCCTCTTCAATTCATTAAATTAGGTTAGAGCATGGGCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACTATTCCTCTTCAATTCATTAAATTAGGTTAGAGCATGGGCAA  678

seq1  CTCTAGAAAACCAAGCATGGGTTGTATTATATCGCCTTATGGAGAAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAAACCAAGCATGGGTTGTATTATATCGCCTTATGGAGAAAACA  728

seq1  ATTATATGTCAGAGGTCAGTGAGATTGGAATCTACAGAAATACTAGAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGTCAGAGGTCAGTGAGATTGGAATCTACAGAAATACTAGAATT  778

seq1  CAATTGAACATATGGGCTTTGAAGTTTGTGGCCCCATAGGGAAAAAAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAACATATGGGCTTTGAAGTTTGTGGCCCCATAGGGAAAAAAAAG  828

seq1  AATAATTTTTTGTTTTTGTTTTTGCAGAAATATATTTATTCACTAATGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTTGTTTTTGTTTTTGCAGAAATATATTTATTCACTAATGTA  878

seq1  ATTTACTTTAGAAACTATGGACTGTTCTATACTTTGGGATCATGAAGTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTTAGAAACTATGGACTGTTCTATACTTTGGGATCATGAAGTAG  928

seq1  AAATTTAAGGATATTTTGGAAAATCAGTTATATTGGATGATGTTTTGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGGATATTTTGGAAAATCAGTTATATTGGATGATGTTTTGCTG  978

seq1  GGGCAAACTTGTGAAGGAACATTTCACTGAAGCAGAAACAGATGAAAGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAACTTGTGAAGGAACATTTCACTGAAGCAGAAACAGATGAAAGGT  1028

seq1  TATTTTGCTAAAGCAAGCACATGAAAGGACACATGATGATGGATTCTTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTAAAGCAAGCACATGAAAGGACACATGATGATGGATTCTTGG  1078

seq1  CTATTGACAGACATGTATTGGTCTGCTTTACATGAGTTGTTGAGCTCCAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACAGACATGTATTGGTCTGCTTTACATGAGTTGTTGAGCTCCAT  1128

seq1  TTGTCATGGTTCCATAGAGAGAAATGCACCAATATGTTTGTGTGCTGTGA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGGTTCCATAGAGAGAAATGCACCAATATGTTTGTGTGCTGTGA  1178

seq1  ATTC  1202
      ||||
seq2  ATTC  1182


seq1: chr6_19856715_19857561
seq2: B6Ng01-290I24.g_65_911

seq1  GAATTCTTTTAGAAATGAACCAGATGGATTGTGATTAAAGGCTTAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGAAATGAACCAGATGGATTGTGATTAAAGGCTTAAAAGA  50

seq1  ATGTTAAAGGAATCTTATGTACATGTGTGGGATGTGAACATGTGCAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAGGAATCTTATGTACATGTGTGGGATGTGAACATGTGCAAGTG  100

seq1  AAGCACATGGTGCAATGGGAGGTATCACTGAAATCCATGAATTCTTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATGGTGCAATGGGAGGTATCACTGAAATCCATGAATTCTTGGGT  150

seq1  AGAGACGATATTAGTATGGTCAAAATTGAGAAAGTGGGAATGGGTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGATATTAGTATGGTCAAAATTGAGAAAGTGGGAATGGGTGGGAG  200

seq1  GAGAACCCTCATAGAGGTCTGGGAAAGGGGATTTCTGAAGAGGAGACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCTCATAGAGGTCTGGGAAAGGGGATTTCTGAAGAGGAGACCTG  250

seq1  GAAATGTGAAAACATTTGAAATGTAAATAAAGAAAATATAGAAGAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGAAAACATTTGAAATGTAAATAAAGAAAATATAGAAGAAAAAC  300

seq1  AATTTAGAAAGTTGTAGGTAGGTCAGATACTGAGAGTTCAAATTATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAAAGTTGTAGGTAGGTCAGATACTGAGAGTTCAAATTATAATT  350

seq1  ATTTTGTGCACAGTTTTATTAGTACATTTCAGGTAGTTGTATGTCTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGCACAGTTTTATTAGTACATTTCAGGTAGTTGTATGTCTGCAT  400

seq1  TTACTGAAAAGTTAGTGGTACTTATCAATCCAAAAGAAGAGCTGAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAAAGTTAGTGGTACTTATCAATCCAAAAGAAGAGCTGAAGGGA  450

seq1  AAATCTGTAGAAAGAGCTTACAACTTACTAGTTTAGACAAGCGATATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTAGAAAGAGCTTACAACTTACTAGTTTAGACAAGCGATATGCA  500

seq1  TCGTTGTATACATAGATAAAGGCTGTTTCATAACACAAAGGACCTTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGTATACATAGATAAAGGCTGTTTCATAACACAAAGGACCTTGTAG  550

seq1  TAAGAGTGGAAATGCTCTTCTCTGCTCACTCTTCTGCAACAGAAGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGGAAATGCTCTTCTCTGCTCACTCTTCTGCAACAGAAGAAATC  600

seq1  TACATGCCTACAGAGAGTGAAGTAGCCCAAACTTTGGTGTTTTGTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCTACAGAGAGTGAAGTAGCCCAAACTTTGGTGTTTTGTTTTGT  650

seq1  TTTAACATATGACCTGCCAATGAGTTGTAACTCTTGAAACACTCTGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATATGACCTGCCAATGAGTTGTAACTCTTGAAACACTCTGTCTG  700

seq1  ATTGACATGACACTGACAGTTCCCATAATATATAAATCATACCACATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATGACACTGACAGTTCCCATAATATATAAATCATACCACATCCT  750

seq1  CCTTGAAGTATTCACCACTCTTTCAATACAGAAGAATCCTTCAATAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGTATTCACCACTCTTTCAATACAGAAGAATCCTTCAATAGCAC  800

seq1  TGTGGTGGTTTGAAAAAGAATGACCTAAGAGACTCTGTGTGTGTGTG  847
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGTTTGAAAAAGAATGACCTAAGAGACTCTGTGTGTGTGTG  847


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