BAC Information

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BAC

Clone NameB6Ng01-290K12
Chromosome6 (Build37)
Map Location 84,598,500 - 84,794,178
singlet/doubletdoublet
Overlap geneExoc6b, LOC665129
Upstream geneClec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1
Downstream geneNpm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290K12.bB6Ng01-290K12.g
ACCGA087744GA087745
length1,157371
definitionB6Ng01-290K12.b B6Ng01-290K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,793,022 - 84,794,178)(84,598,500 - 84,598,876)
sequence
gaattcctgaatgagcaatgtgtgtgcttactgttttgtagcttgtccag
attatcatcaatacaacacacttggagaagtcctgtaaatacctggagga
attcatcaccaatatcactaatgtccttccagagacggtccataccacca
agctttatggtaccacaactttcaaggtgagaacacatcagcatagaggg
ggtacccagtgacagtgcatggacacagtctgggcagtttcatcagtggc
tttgtttcaataggatgatttgtgaaagtattttggagtaaggaagagtt
tggtttggtctccatttttctagaaaacacgagggtgatatgtgtgtgtt
caaaataaccacgatatttcaacaacattatcaggatagtgtggttatag
ctgacatgaattttaactgtaatgtttatttggtaactcttctttccatg
tcttgctttttaaaaaatgtttgagtgacagatccttactcccaatagtt
agatattttttttaattttaagcccacagcactatttattactgtcagag
aaaaacaacatctttatagaacaaaggaaagattagtggtagataagttt
ctgaagcataaacactcactcttaaaggaatttcatgagtcttaataaaa
tcctgtacattaattatcatgtgaaaattttcatggatattaatcagaaa
aatattgcagttttaaacaaaaaagagtgaatttgatatataaatgaacc
tcagtggagacaaggctgggtgtgtagctctggcttgtctgaaattctgt
atagaccaagctggcttcaaactcacagagattctgcttgcctcctcttt
ctgaatagctgggtgttaaaggacagcaccgcacaccaggcatgggtttg
aattttgttgttatgttattgctgtagtttttagacatgttctgtgacag
tcaaaaatctaaaaatggtgacaactagacacatgagtagagttttaacc
atgacttatgtcccttggtgttccttttcctatcccttatcctttctgtt
tgtgggtgccaatctctaaaataaccaccaaagaaggaaatccaggattg
gatcaattgctgatacaggtgtgtgaagagaggcttttatgaagagctaa
ctgtaag
agttgccgaaaagagaagactgaggtggtctcaaggagaagctaaaagat
gacctactcctgatcagccctccctagatgacagacttgtgaataaagcc
atactagtattccaggactgctatgggatcatccttctgggagactatag
ctaataactaatttaagaattgacttatggctgagtggtggtgtaggcaa
ataatcccagacctcagaggcagagacagattaatctcttgagtttgagg
ctagcttggactgcagagtaaattccaggacagacaggggtatggagaga
gagacctttaaagaaaaaggaagaggaggataaagaggaggaggaggagg
aagaagaggaggaggagaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_84793022_84794178
seq2: B6Ng01-290K12.b_44_1200 (reverse)

seq1  CTTACAGTTAAGCTCTTC-TAAAAGCCTCTCTTTCACACA-CTGTAATCA  48
      ||||||||| |||||||| |||||||||||| |||||||| |||| ||||
seq2  CTTACAGTT-AGCTCTTCATAAAAGCCTCTC-TTCACACACCTGT-ATCA  47

seq1  CCAAATGGATCAAAT-CTGG--TTTCTTCTTTGGTGGTTATTTTTAAGAG  95
       | ||| |||| ||| ||||  || |||||||||||||||||||  ||||
seq2  GC-AATTGATCCAATCCTGGATTTCCTTCTTTGGTGGTTATTTT--AGAG  94

seq1  A-TGGCA-CCACAAACAGAAAGGATAAAGGATAGGAAAAAGGAAACACCA  143
      | ||||| ||||||||||||||||||| |||||||||||  | |||||||
seq2  ATTGGCACCCACAAACAGAAAGGATAAGGGATAGGAAAA--GGAACACCA  142

seq1  AGGGACATAAGTCATGGTTAAAACTCTACTCATGTGTCTAGTTGTCACCA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATAAGTCATGGTTAAAACTCTACTCATGTGTCTAGTTGTCACCA  192

seq1  TTTTTAGATTTTTGACTGTCACAGAACATGTCTAAAAACTACAGCAATAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGATTTTTGACTGTCACAGAACATGTCTAAAAACTACAGCAATAA  242

seq1  CATAACAACAAAATTCAAA-CCATGCCTGGTGTGCGGTGCTGTCCTTTAA  292
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATAACAACAAAATTCAAACCCATGCCTGGTGTGCGGTGCTGTCCTTTAA  292

seq1  CACCCAGCTATTCAGAAAGAGGAGGCAAGCAGAATCTCTGTGAGTTTGAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCTATTCAGAAAGAGGAGGCAAGCAGAATCTCTGTGAGTTTGAA  342

seq1  GCCAGCTTGGTCTATACAGAATTTCAGACAAGCCAGAGCTACACACCCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTGGTCTATACAGAATTTCAGACAAGCCAGAGCTACACACCCAG  392

seq1  CCTTGTCTCCACTGAGGTTCATTTATATATCAAATTCACTCTTTTTTGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTCCACTGAGGTTCATTTATATATCAAATTCACTCTTTTTTGTT  442

seq1  TAAAACTGCAATATTTTTCTGATTAATATCCATGAAAATTTTCACATGAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGCAATATTTTTCTGATTAATATCCATGAAAATTTTCACATGAT  492

seq1  AATTAATGTACAGGATTTTATTAAGACTCATGAAATTCCTTTAAGAGTGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGTACAGGATTTTATTAAGACTCATGAAATTCCTTTAAGAGTGA  542

seq1  GTGTTTATGCTTCAGAAACTTATCTACCACTAATCTTTCCTTTGTTCTAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATGCTTCAGAAACTTATCTACCACTAATCTTTCCTTTGTTCTAT  592

seq1  AAAGATGTTGTTTTTCTCTGACAGTAATAAATAGTGCTGTGGGCTTAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTGTTTTTCTCTGACAGTAATAAATAGTGCTGTGGGCTTAAAA  642

seq1  TTAAAAAAAATATCTAACTATTGGGAGTAAGGATCTGTCACTCAAACATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAATATCTAACTATTGGGAGTAAGGATCTGTCACTCAAACATT  692

seq1  TTTTAAAAAGCAAGACATGGAAAGAAGAGTTACCAAATAAACATTACAGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGCAAGACATGGAAAGAAGAGTTACCAAATAAACATTACAGT  742

seq1  TAAAATTCATGTCAGCTATAACCACACTATCCTGATAATGTTGTTGAAAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCATGTCAGCTATAACCACACTATCCTGATAATGTTGTTGAAAT  792

seq1  ATCGTGGTTATTTTGAACACACACATATCACCCTCGTGTTTTCTAGAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGGTTATTTTGAACACACACATATCACCCTCGTGTTTTCTAGAAAA  842

seq1  ATGGAGACCAAACCAAACTCTTCCTTACTCCAAAATACTTTCACAAATCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACCAAACCAAACTCTTCCTTACTCCAAAATACTTTCACAAATCA  892

seq1  TCCTATTGAAACAAAGCCACTGATGAAACTGCCCAGACTGTGTCCATGCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGAAACAAAGCCACTGATGAAACTGCCCAGACTGTGTCCATGCA  942

seq1  CTGTCACTGGGTACCCCCTCTATGCTGATGTGTTCTCACCTTGAAAGTTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTGGGTACCCCCTCTATGCTGATGTGTTCTCACCTTGAAAGTTG  992

seq1  TGGTACCATAAAGCTTGGTGGTATGGACCGTCTCTGGAAGGACATTAGTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCATAAAGCTTGGTGGTATGGACCGTCTCTGGAAGGACATTAGTG  1042

seq1  ATATTGGTGATGAATTCCTCCAGGTATTTACAGGACTTCTCCAAGTGTGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGTGATGAATTCCTCCAGGTATTTACAGGACTTCTCCAAGTGTGT  1092

seq1  TGTATTGATGATAATCTGGACAAGCTACAAAACAGTAAGCACACACATTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGATGATAATCTGGACAAGCTACAAAACAGTAAGCACACACATTG  1142

seq1  CTCATTCAGGAATTC  1157
      |||||||||||||||
seq2  CTCATTCAGGAATTC  1157

seq1: chr6_84598500_84598876
seq2: B6Ng01-290K12.g_67_443

seq1  GAATTCAGTTGCCGAAAAGAGAAGACTGAGGTGGTCTCAAGGAGAAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGCCGAAAAGAGAAGACTGAGGTGGTCTCAAGGAGAAGCTA  50

seq1  AAAGATGACCTACTCCTGATCAGCCCTCCCTAGATGACAGACTTGTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGACCTACTCCTGATCAGCCCTCCCTAGATGACAGACTTGTGAAT  100

seq1  AAAGCCATACTAGTATTCCAGGACTGCTATGGGATCATCCTTCTGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATACTAGTATTCCAGGACTGCTATGGGATCATCCTTCTGGGAGA  150

seq1  CTATAGCTAATAACTAATTTAAGAATTGACTTATGGCTGAGTGGTGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTAATAACTAATTTAAGAATTGACTTATGGCTGAGTGGTGGTGT  200

seq1  AGGCAAATAATCCCAGACCTCAGAGGCAGAGACAGATTAATCTCTTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATAATCCCAGACCTCAGAGGCAGAGACAGATTAATCTCTTGAGT  250

seq1  TTGAGGCTAGCTTGGACTGCAGAGTAAATTCCAGGACAGACAGGGGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTAGCTTGGACTGCAGAGTAAATTCCAGGACAGACAGGGGTATG  300

seq1  GAGAGAGAGACCTTTAAAGAAAAAGGAAGAGGAGGATAAAGAGGAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGACCTTTAAAGAAAAAGGAAGAGGAGGATAAAGAGGAGGAGG  350

seq1  AGGAGGAAGAAGAGGAGGAGGAGAAGG  377
      |||||||||||||||||||||||||||
seq2  AGGAGGAAGAAGAGGAGGAGGAGAAGG  377