BAC Information

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BAC

Clone NameB6Ng01-291I01
Chromosome3 (Build37)6 (Build37)
Map Location 140,123,416 - 140,124,52438,651,628 - 38,652,469
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291I01.bB6Ng01-291I01.g
ACCGA088369GA088370
length1,0971,031
definitionB6Ng01-291I01.b B6Ng01-291I01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,123,416 - 140,124,524)(38,651,628 - 38,652,469)
sequence
gaattcctaaaaacatagctggaaatcattatatatgtgtagagaaccaa
acacggacccatgttaagtcctgtgcatgctttctcactctctatgagct
catatgatcattgatcatgttgacgtagaatctcatgttttcttagtgtc
ttccatctcctttggctcataggctctttttgcctcttcttctttaaagt
tcgttgatcctgggaggatagatttgatggagacatccgacttaactgag
ttttccaaggtctctcactccctacataatatctggctatggatctttgt
attgttcctatctgatgcaggaggaagaaatccttatatgatcaacatat
ttctgacaagaaacactaaaactattaactatgatgggaaagtagtgaat
aatttatatctaaatgtgtttcctaatctttcttattccactaatattgg
accctaatgtcaaaggttttgtaactagttgatctcacctatctttttgt
ccatgccctgaccacagtcatgttatatttccctttggtcccaccttacg
tctggtttctttcgttttctaagttagccatttttactgctttcatgtct
cataaacacgtatatccaatttcacacatccatgtaagatatatgatcac
tccccaaatgacagaaaataaacaatgtatgtctttgtaaaagagtgaat
gttaatattctcaaattatttcataccatggaaattgaatgagcatttta
taattatttttaagtaaaacaccgtgacttctgatacagaaatactcaaa
tacccccctttgtgaatataactgtgaatttcttgatattatatttgcaa
aataatctaataacacaacagagtgaggatccataatgatgaagttgact
tcattccaaagatgaagggatagttcacacatgtaaatccataatgtgat
ccacatcttaaacacactgcatgaaaaaaaaccctcaatatcacattaga
tgtggacatagctctttggaaattccatcctctatcactaaaataaaata
aaataattgtcctggaagacttcgtattcaagggcatccctcaccta
gaattctccctttagttctataccccatttttgattgggttctttgtttt
tgtttttgtttttgtttttgtttttttgtttttgtttttgttttttttgt
ttttttttagtggttaacatcttgagttctttatataccctgctcctttg
ctgactatctaatatggggttattgaactgcacttctaggctgtcaggtt
accttccctgtctctctaggcaccattagcttgtgtgctggggttgagct
cctccctgcttggtgacagaccatcaacagatctctgctttagtccccct
tcataaaaactttgaaaggatgatgttataacaacaatcacttcgaggga
ttacagcttgtgcctgccaaatggcaaagttagaaggagcccattgtcct
tcctatggcattattgtggtgacaagataagctgatcaaactgtcagagt
ggaagagcctggatgtaggaagggcctgaaggggtcaagagatccaggta
gtgatttctcttactggggtgaatgaggtggcaatgggcctgcaatgagc
cttcactatcccaatgcagcttctgtgggcctgggggacagatgcgcagt
catgcactgtgtgcatgcaaatgtgcttaggcacaggtaatctgtacagc
acaccctgagaggccactgagaacctctgtgctcttgcagttcttttgtt
tggtaagcacagtagctacgtgtttctaggaacactacttatattagagc
tataaccgtggggttcattccacatgcacaccgccttactgagcggctcc
gccgcctcatgttattttctttatcaggggcactgtggggcccacactct
gcttctccccccgagttcctgactctgaaaaccagcatcaacttccccgg
actgtggacagctgggacatgaatatgaacagcagtgggtgcaagggcat
aatgtctgaatatgaatagcctgggggtgcatgaagaagccctgtgaaca
taccccacccccatctgggtcacccccagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140123416_140124524
seq2: B6Ng01-291I01.b_43_1139 (reverse)

seq1  TAGGTTGAGGGATGCCCTTTGAATACCGAGTCTCTCCAGGACAATTTATT  50
      |||| |||||||||||| ||||||||  ||||| ||||||||||||   |
seq2  TAGG-TGAGGGATGCCC-TTGAATACGAAGTCT-TCCAGGACAATT--AT  45

seq1  TTTATTTTTATTTTTAGTGAATAGAGGATGGATTTTCCAAAGAGCTATGT  100
      ||||||||   |||||||| |||||||||||| |||||||||||||||||
seq2  TTTATTTT--ATTTTAGTG-ATAGAGGATGGAATTTCCAAAGAGCTATGT  92

seq1  CCACATCTAATGTGATATTGAGGGTTTTTTTTCTTTCAGTGTGTTTAAGA  150
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  CCACATCTAATGTGATATTGAGGGTTTTTTTTCATGCAGTGTGTTTAAGA  142

seq1  TGTGGATCACATTTATGGATTTACATGTGTTGAACTATCCCTTCATCTTT  200
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TGTGGATCACA-TTATGGATTTACATGTG-TGAACTATCCCTTCATCTTT  190

seq1  GGAATGAAGTCAACTTCATCATTATGGATCCTCATTTTGTTGTGTTATTA  250
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  GGAATGAAGTCAACTTCATCATTATGGATCCTCACTCTGTTGTGTTATTA  240

seq1  GATTATTTTTGCAAATATAATATCAAGAAATTCACAGTTATATTCACAAA  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTA-TTTTGCAAATATAATATCAAGAAATTCACAGTTATATTCACAAA  289

seq1  GGGGGGTATTTGAGTATTTCTGTATCAGAAGTCATGGTGTTTTACTTAAA  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGGGGTATTTGAGTATTTCTGTATCAGAAGTCACGGTGTTTTACTTAAA  339

seq1  AATAATTATAAAATGCTCATTCAATTTCCATGGTATGAAATAATTTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATAAAATGCTCATTCAATTTCCATGGTATGAAATAATTTGAGA  389

seq1  ATATTAACATTCACTCTTTTACAAAGACATACATTGCTTATTTTCTGTCA  450
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATATTAACATTCACTCTTTTACAAAGACATACATTGTTTATTTTCTGTCA  439

seq1  TTTGGGGAGTGATCATATATCTTACATGGATGTGTGAAATTGGATATATG  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGGGGAGTGATCATATATCTTACATGGATGTGTGAAATTGGATATACG  489

seq1  TGTTTATGAGACATGAAAGCAGTAAAAATGGCTAACTTAGAAAAAGAAAG  550
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTTTATGAGACATGAAAGCAGTAAAAATGGCTAACTTAGAAAACGAAAG  539

seq1  AAACCAGACGTAAGGTGGGACCAAAGGGAAATATAACATGACTGTGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGACGTAAGGTGGGACCAAAGGGAAATATAACATGACTGTGGTCA  589

seq1  GGGCATGGACAAAAAGATAGGTGAGATCAACTAGTTACAAAACCTTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGACAAAAAGATAGGTGAGATCAACTAGTTACAAAACCTTTGAC  639

seq1  ATTAGGGTCCAATATTAGTGGAATAAGAAAGATTAGGAAACACATTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTCCAATATTAGTGGAATAAGAAAGATTAGGAAACACATTTAGA  689

seq1  TATAAATTATTCACTACTTTCCCATCATAGTTAATAGTTTTAGTGTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTATTCACTACTTTCCCATCATAGTTAATAGTTTTAGTGTTTCT  739

seq1  TGTCAGAAATATGTTGATCATATAAGGATTTCTTCCTCCTGCATCAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAAATATGTTGATCATATAAGGATTTCTTCCTCCTGCATCAGATA  789

seq1  GGAACAATACAAAGATCCATAGCCAGATATTATGTAGGGAGTGAGAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATACAAAGATCCATAGCCAGATATTATGTAGGGAGTGAGAGACC  839

seq1  TTGGAAAACTCAGTTAAGTCGGATGTCTCCATCAAATCTATCCTCCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAACTCAGTTAAGTCGGATGTCTCCATCAAATCTATCCTCCCAGG  889

seq1  ATCAACGAACTCTAAAGAAGAAGAGGCAAAAAGAGCCTATGAGCCAAAGG  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCAACGAACTTTAAAGAAGAAGAGGCAAAAAGAGCCTATGAGCCAAAGG  939

seq1  AGATGGAAGACACTAAGAAAACATGAGATTCTACGTCAACATGATCAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAGACACTAAGAAAACATGAGATTCTACGTCAACATGATCAATG  989

seq1  ATCATATGAGCTCATAGAGAGTGAGAAAGCATGCACAGGACTTAACATGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGAGCTCATAGAGAGTGAGAAAGCATGCACAGGACTTAACATGG  1039

seq1  GTCCGTGTTTGGTTCTCTACATATATATAATGATTTCCAGTTATGTTTTT  1100
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  GTCCGTGTTTGGTTCTCTACACATATATAATGATTTCCAGCTATGTTTTT  1089

seq1  ATGGAATTC  1109
      | |||||||
seq2  A-GGAATTC  1097

seq1: chr6_38651628_38652469
seq2: B6Ng01-291I01.g_243_1096

seq1  CTGCACGTCTAGGCTGTCAGCAGAGCTTCCCTGTCTCTCTAGGCACCAGG  50
      |||||| |||||||||||||   | |||||||||||||||||||||||  
seq2  CTGCACTTCTAGGCTGTCAGGTTACCTTCCCTGTCTCTCTAGGCACCATT  50

seq1  AGCTTGTGTGCTGGGGTTGAGCTCCTCCCTGCTTGGTGACAGACCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGTGCTGGGGTTGAGCTCCTCCCTGCTTGGTGACAGACCATCAA  100

seq1  CAGATCTCTGCTTTAGTCCAGCATCCTAGAAACTTTGTAGGGATGATGTT  150
      |||||||||||||||||||  | || || |||||||| | ||||||||||
seq2  CAGATCTCTGCTTTAGTCCCCCTTCATAAAAACTTTGAAAGGATGATGTT  150

seq1  AGAAGAACAATCAGTTCAAGGGATTACAGCTTGTGCCTGCCAAATGGCAA  200
      | || |||||||| ||| ||||||||||||||||||||||||||||||||
seq2  ATAACAACAATCACTTCGAGGGATTACAGCTTGTGCCTGCCAAATGGCAA  200

seq1  TGTTAGAAAGAGCCCAGTGTCCTACCTATGGCATTATTGTGGTGACAAGA  250
       ||||||| ||||||| |||||| ||||||||||||||||||||||||||
seq2  AGTTAGAAGGAGCCCATTGTCCTTCCTATGGCATTATTGTGGTGACAAGA  250

seq1  TAAGCTGATCAAACTGTCAGAGTGGAAGAGCCTGGATGTAGGAAGGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGATCAAACTGTCAGAGTGGAAGAGCCTGGATGTAGGAAGGGCCT  300

seq1  GAAGGGGTCAAGAGATCCAGGTAGTGATTTCTCTTACTGGGGTGAATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGTCAAGAGATCCAGGTAGTGATTTCTCTTACTGGGGTGAATGAG  350

seq1  GTGGCAATGGGCCTGCAATGAGCCTTCACTATCCCAATGCAGCTTCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAATGGGCCTGCAATGAGCCTTCACTATCCCAATGCAGCTTCTGTG  400

seq1  GGCCTGGGGGACAGATGCGCAGTCATGCACTGTGTGCATGCAAATGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGGGACAGATGCGCAGTCATGCACTGTGTGCATGCAAATGTGCT  450

seq1  TAGGCACAGGTAATCTGTACAGCACACCCTGAGAGGCCACTGAGAACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACAGGTAATCTGTACAGCACACCCTGAGAGGCCACTGAGAACCTC  500

seq1  TGTGCTCTTGCAGTTCTTTTGTTTGGTAAGCACAGTAGCTACGTGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTTGCAGTTCTTTTGTTTGGTAAGCACAGTAGCTACGTGTTTCT  550

seq1  AGGAACACTACTTATATTAGAGCTATAACCGTGGGGTTCATTCCACATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACTACTTATATTAGAGCTATAACCGTGGGGTTCATTCCACATGC  600

seq1  ACACCGCCTTACTGAGCAGCTCAGCAGCCTCATGTTA-TTTCTTAGTCA-  648
      ||||||||||||||||| |||| || ||||||||||| ||||||  ||| 
seq2  ACACCGCCTTACTGAGCGGCTCCGCCGCCTCATGTTATTTTCTTTATCAG  650

seq1  GGGCACTGT-GGGCCCACACTCTGCTTCTCACCCCGAG-TACTGACTCTG  696
      ||||||||| |||||||||||||||||||| ||||||| | |||||||||
seq2  GGGCACTGTGGGGCCCACACTCTGCTTCTCCCCCCGAGTTCCTGACTCTG  700

seq1  AAAACCAGCATCAAC-TCCCCGGACTGTGGGCAGCTGGGACATGAAGATG  745
      ||||||||||||||| |||||||||||||| ||||||||||||||| |||
seq2  AAAACCAGCATCAACTTCCCCGGACTGTGGACAGCTGGGACATGAATATG  750

seq1  AGCAGCAGTGGGTGC-AGGGCA-GATGTCTGAAGA-GAGTAGC--TGGGG  790
      | ||||||||||||| ||||||  ||||||||| | || ||||   ||||
seq2  AACAGCAGTGGGTGCAAGGGCATAATGTCTGAATATGAATAGCCTGGGGG  800

seq1  TGCCTGAAAGAGGCCTGTGAGCATACCC--ACCCCACATGGGTCACCCCC  838
      ||| ||||  || ||||||| |||||||   |||||  ||||||||||||
seq2  TGCATGAAGAAGCCCTGTGAACATACCCCACCCCCATCTGGGTCACCCCC  850

seq1  AGTC  842
      ||||
seq2  AGTC  854