BAC Information

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BAC

Clone NameB6Ng01-291I14
Chromosome2 (Build37)6 (Build37)
Map Location 126,115,703 - 126,116,86198,282,724 - 98,282,932
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1
Downstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291I14.bB6Ng01-291I14.g
ACCGA088395GA088396
length1,152446
definitionB6Ng01-291I14.b B6Ng01-291I14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,115,703 - 126,116,861)(98,282,724 - 98,282,932)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctcagaggacaactcttagggatcaattctctcctgctaccatg
ggatctccatgaaccaagactgaggtatatgcatcagcaatcttgaaagt
ttgcccagttactccaagtcaaggttgaaggtcacagccctaaaggaaaa
gggacaccttcctcatgttccctttagcctgatcagtaatttgattacag
gttttctagagtacctgggatgcttctaggcacactgcaactgatagagc
tttatgttcaaatggccataaagagctaaaacgtcatctatgatgccaat
gatactgcaccccatgtcttgcctactgagatactctgaggggaagaaat
gacaggaactcttgccaaaataaatcacgaaggattggcctgagcaacca
agtaacattttgaccatagccacccagaactgagtaatgaaggggacggg
agaaaacggaaactgtgctggaagctagtacgtgtgcacatggtgtgcag
agatgctaaggactaaaggagggcgccaggctaagggggatgccaggaaa
gtgtagaagacttataaatgtatccactgtacagcactgacagcagctgg
accccagctctcctgtctgcctctggcagggagactgttagccttccaag
tctgggagaacagccctgtgataaatcaccctgtggtctcagaaagtcaa
gtgtctcacgtgaagagcctgcagctctcaagtgatcaaggagcaacaga
tgcacagggatctagtgaagtttaagaacggttccccaagaaactagata
ctgagctgggagttgaccatcgactcattaacacctcacaaactgtgtga
gg
acacagggcaggaacctggaggcaggagctgatgcagaggccatggaggg
atgttgcttactggattgcttaccctggcttgatcagcttgctttcttat
agaacccaggaccaccagcccagaaatggcatcactcacaatgggccagc
ccccttcggtcagtgattgagaaaatgacttacagctgggtctcatagag
gcatttccacaatggaggctcctttctctgtgctaactccagcctgtatc
aagttgacacacaaaaccaatcagtacagtctcccattgttgtttcttcc
ttcttcctcctcctccttttcttctcctcccccctccttcttctcctctt
cctccttctcctcctccaccacctcctcctccaccacctcctcctccttc
tcctcttcctccttctcctcctccaccacctcctcctccaccacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126115703_126116861
seq2: B6Ng01-291I14.b_48_1199

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200

seq1  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300

seq1  TTTCTCCTCAGAGGACAACTCTTAGGGATCAATTCTCTCCTGCTACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCAGAGGACAACTCTTAGGGATCAATTCTCTCCTGCTACCATG  350

seq1  GGATCTCCATGAACCAAGACTGAGGTATATGCATCAGCAATCTTGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCATGAACCAAGACTGAGGTATATGCATCAGCAATCTTGAAAGT  400

seq1  TTGCCCAGTTACTCCAAGTCAAGGTTGAAGGTCACAGCCCTAAAGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGTTACTCCAAGTCAAGGTTGAAGGTCACAGCCCTAAAGGAAAA  450

seq1  GGGACACCTTCCTCATGTTCCCTTTAGCCTGATCAGTAATTTGATTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACCTTCCTCATGTTCCCTTTAGCCTGATCAGTAATTTGATTACAG  500

seq1  GTTTTCTAGAGTACCTGGGATGCTTCTAGGCACACTGCAACTGATAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGAGTACCTGGGATGCTTCTAGGCACACTGCAACTGATAGAGC  550

seq1  TTTATGTTCAAATGGCCATAAAGAGCTAAAACGTCATCTATGATGCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTCAAATGGCCATAAAGAGCTAAAACGTCATCTATGATGCCAAT  600

seq1  GATACTGCACCCCATGTCTTGCCTACTGAGATACTCTGAGGGGAAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGCACCCCATGTCTTGCCTACTGAGATACTCTGAGGGGAAGAAAT  650

seq1  GACAGGAACTCTTGCCAAAATAAATCACGAAGGATTGGCCTGAGCAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAACTCTTGCCAAAATAAATCACGAAGGATTGGCCTGAGCAACCA  700

seq1  AGTAACATTTTGACCATAGCCACCCAGAACTGAGTAATGAAGGGGACGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATTTTGACCATAGCCACCCAGAACTGAGTAATGAAGGGGACGGG  750

seq1  AGAAAACGGAAACTGTGCTGGAAGCTAGTACGTGTGCACATGGTGTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACGGAAACTGTGCTGGAAGCTAGTACGTGTGCACATGGTGTGCAG  800

seq1  AGATGCTAAGGACT-AAGGAGGGCGCCAGGCTAAGGGGGATGCCAGGAAA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGATGCTAAGGACTAAAGGAGGGCGCCAGGCTAAGGGGGATGCCAGGAAA  850

seq1  GTGTAGAAGACTTATAAATGTATCCACTGTACAGCACTGACAGCAGCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAAGACTTATAAATGTATCCACTGTACAGCACTGACAGCAGCTGG  900

seq1  ACCCCAGCTCTCCTGTCTGCCTCTGGCAGGGAGACTGTTAGCCTTCCAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCTCTCCTGTCTGCCTCTGGCAGGGAGACTGTTAGCCTTCCAAG  950

seq1  TCTGGGAGAACAGCCCTGTGATAAATCACCCTGTGGTCTCAGAAAGTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGAACAGCCCTGTGATAAATCACCCTGTGGTCTCAGAAAGTCAA  1000

seq1  GTGTTCTCACGTGAAGAGCCTGCAGCTCTCCAAGTGATCAGGGAGCAACA  1049
      ||| ||||||||||||||||||||||||| |||||||||| |||||||||
seq2  GTG-TCTCACGTGAAGAGCCTGCAGCTCT-CAAGTGATCAAGGAGCAACA  1048

seq1  GATGCACAGGGATCTAAGTGAAGTTTAAGAACGG-TCCCCAGGAAACCTA  1098
      ||||||||||||||| |||||||||||||||||| |||||| |||| |||
seq2  GATGCACAGGGATCT-AGTGAAGTTTAAGAACGGTTCCCCAAGAAA-CTA  1096

seq1  GGATACTGAGCTGGGAGTTTGACATCCGAACTCCCATTTAACA-CTCACA  1147
       ||||||||||||||||||   ||||   ||||    |||||| ||||||
seq2  -GATACTGAGCTGGGAGTTGACCATC--GACTC---ATTAACACCTCACA  1140

seq1  AACTGTGTGAGG  1159
      ||||||||||||
seq2  AACTGTGTGAGG  1152

seq1: chr6_98282724_98282932
seq2: B6Ng01-291I14.g_431_485 (reverse)

seq1  AGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAG  50
      |||||||||||||| ||||||| |||| || ||||||||||| || ||||
seq2  AGGAGGAAGAGGAGAAGGAGGAGGAGGTGGTGGAGGAGGAGGTGGTGGAG  50

seq1  GAGGAGAAATAATTGCTAAGTTACAAGGACCTACAATACTACAGTACAGG  100
      |||||                                             
seq2  GAGGA---------------------------------------------  55

seq1  CCATATTACCTGATATTGGAGACTAGAATTTATGAAATATCACTCTCACT  150
                                                        
seq2  --------------------------------------------------  55

seq1  TCTGCAATGCTGCTTCTCCTTTTAAAGCCATGCTGGCATGGAGAGGTGGT  200
                                                        
seq2  --------------------------------------------------  55

seq1  GGAGGAGGA  209
               
seq2  ---------  55