BAC Information

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BAC

Clone NameB6Ng01-291I17
Chromosome6 (Build37)
Map Location 77,185,304 - 77,316,090
singlet/doubletdoublet
Overlap geneCtnna2, Lrrtm1
Upstream geneLOC100042952, LOC668153, EG668155, LOC100042956
Downstream geneLOC668169, EG434050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291I17.bB6Ng01-291I17.g
ACCGA088401GA088402
length1,125528
definitionB6Ng01-291I17.b B6Ng01-291I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,314,972 - 77,316,090)(77,185,304 - 77,185,837)
sequence
gaattcttcactggatctgccttacttatgagataaagagaaaatgttca
ggcatacttttcaaaatcttgctcccctctacctctcaagccttcactag
ctttccatagccatctctgcatcagctacatcaactgtatagttcagagc
ttatcctgctcattcaggattcaggtatcttctcagatactcttctgaaa
tgttttttgactctagtccacctattccttgattccttgattattttcac
aagctgagaggctcacagattagccctgtttagagttaatatatttgttg
atttaattatcttattaatatctaacaatttttagtaagacatccttgag
caagatacatcatagtattttctgaatacattaacctcagtctttatcca
gatacctttcttgtacgcaaaaattagaaatctaactgtttgagctcatg
tgctaaaatttcttgttcagattaacttactgacccaacccttcagtatg
gatttattgaagcttttgcatgtgtttactgctatatttgaaaccattct
ttcaaaaccgaatggaacagaccaagcttctactcaccatgatatatttg
ttaccataaaaataatataggggaaaaacttacaaacatatatcataaaa
gttgctggttgatataagtttaattatgttaatcaaaacactagggtgta
agaaaatgtacttttatcatcacacgctattgtaagagacatggtcacac
tatgtagctgaagctgatcctgatttcttgatgctccagccttagcatcc
caagtgttatcatcctgtgccattacactcagtactgggaaggtgcttct
gaatgggacttcactgataaatgaactggctgcctaagtattataccaga
gggattcagtagaagattgacacgtaaatagtctaaggaatgttctttgc
tggagaaatgagaaaaaaatcacatgttagatttctaggttaaaaaaaat
aagtctttgaactaaagtcttacatctagatcactgaacatatactactg
gagggtgactccaggaaactattgaaaatatataccatttacatacttat
tatttttatttatacacatatataa

atggtagaagattaagaagtagttcccaagaataggggtcagtttgaagg
aagatataaattaatctgaatgtgctggaattccacatagaattcatgga
atggatgggggcaaggaaatccatacaaagtagatctgtgaaaggaatcc
atgctcatggcataagccagtatgaatccatctggaaatggttgggcctt
ccttatttctgactatccttcaatataatatgattagttttctatggaat
attgattagataaataatcaaatcagttaataaactcaacaagagtgaac
cagtaagtatgctagactttcctaagaaagattcaggaacattaccagta
ttatgtggtaatccatattccatgtatgtagggttcctcatatcttatct
tttatgtgtacaggtagaaggtagaggatcttaaaatcagaaaattaata
ggtttgttcttgaggaatttcattttcttacatcatctatttatgtgtgt
gtgtgtgtgtgtgagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77314972_77316090
seq2: B6Ng01-291I17.b_46_1170 (reverse)

seq1  TTATATATGTAT--------------------TGTAAATGTGTATATATT  30
      |||||||||| |                    |||||||| |||||||||
seq2  TTATATATGTGTATAAATAAAAATAATAAGTATGTAAATG-GTATATATT  49

seq1  TATCATAGTTTTTCCCTGAGTCACCCTCCAGTAAGTATTATGTTCAGTGA  80
      |   ||||  |||||  ||||||||||||||| |||| ||||||||||||
seq2  TTCAATAG--TTTCCTGGAGTCACCCTCCAGT-AGTA-TATGTTCAGTGA  95

seq1  TTCTTAGATGTAAGACTTTAGTTCAAAGACTTATTTTTTTTAACCCTAGA  130
      |   ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  T--CTAGATGTAAGACTTTAGTTCAAAGACTTATTTTTTTTAA-CCTAGA  142

seq1  AATTCTAACATGTTGATTTTTTTCTCATTTTCTCCAGCAAAGAACATTCC  180
      || ||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  AA-TCTAACATG-TGATTTTTTTCTCA-TTTCTCCAGCAAAGAACATTCC  189

seq1  TTAGACTATTTTACGTGTCAATTCTTCTACCTGAATCCCTCTGGTATAAT  230
      |||||||| |||||||||||| ||||||| ||||||||||||||||||||
seq2  TTAGACTA-TTTACGTGTCAA-TCTTCTA-CTGAATCCCTCTGGTATAAT  236

seq1  ACTTAGGCAGCCAGTTCATTTATCAGTGAAGTCCCATTCAGAAGCACCTT  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGCAGCCAGTTCATTTATCAGTGAAGTCCCATTCAGAAGCACCTT  286

seq1  CCCAGTACTGAGTGTAATGGCACAGGATGATAACACTTGGGATGCTAAGG  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACTGAGTGTAATGGCACAGGATGATAACACTTGGGATGCTAAGG  336

seq1  CTGGAGCATCAAGAAATCAGGATCAGCTTCAGCTACATAGTGTGACCATG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCATCAAGAAATCAGGATCAGCTTCAGCTACATAGTGTGACCATG  386

seq1  TCTCTTACAATAGCGTGTGATGATAAAAGTACATTTTCTTACACCCTAGT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACAATAGCGTGTGATGATAAAAGTACATTTTCTTACACCCTAGT  436

seq1  GTTTTGATTAACATAATTAAACTTATATCAACCAGCAACTTTTATGATAT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATTAACATAATTAAACTTATATCAACCAGCAACTTTTATGATAT  486

seq1  ATGTTTGTAAGTTTTTCCCCTATATTATTTTTATGGTAACAAATATATCA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTAAGTTTTTCCCCTATATTATTTTTATGGTAACAAATATATCA  536

seq1  TGGTGAGTAGAAGCTTGGTCTGTTCCATTCGGTTTTGAAAGAATGGTTTC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGTAGAAGCTTGGTCTGTTCCATTCGGTTTTGAAAGAATGGTTTC  586

seq1  AAATATAGCAGTAAACACATGCAAAAGCTTCAATAAATCCATACTGAAGG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGCAGTAAACACATGCAAAAGCTTCAATAAATCCATACTGAAGG  636

seq1  GTTGGGTCAGTAAGTTAATCTGAACAAGAAATTTTAGCACATGAGCTCAA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTCAGTAAGTTAATCTGAACAAGAAATTTTAGCACATGAGCTCAA  686

seq1  ACAGTTAGATTTCTAATTTTTGCGTACAAGAAAGGTATCTGGATAAAGAC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGATTTCTAATTTTTGCGTACAAGAAAGGTATCTGGATAAAGAC  736

seq1  TGAGGTTAATGTATTCAGAAAATACTATGATGTATCTTGCTCAAGGATGT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTAATGTATTCAGAAAATACTATGATGTATCTTGCTCAAGGATGT  786

seq1  CTTACTAAAAATTGTTAGATATTAATAAGATAATTAAATCAACAAATATA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAAAAATTGTTAGATATTAATAAGATAATTAAATCAACAAATATA  836

seq1  TTAACTCTAAACAGGGCTAATCTGTGAGCCTCTCAGCTTGTGAAAATAAT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTAAACAGGGCTAATCTGTGAGCCTCTCAGCTTGTGAAAATAAT  886

seq1  CAAGGAATCAAGGAATAGGTGGACTAGAGTCAAAAAACATTTCAGAAGAG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATCAAGGAATAGGTGGACTAGAGTCAAAAAACATTTCAGAAGAG  936

seq1  TATCTGAGAAGATACCTGAATCCTGAATGAGCAGGATAAGCTCTGAACTA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGAAGATACCTGAATCCTGAATGAGCAGGATAAGCTCTGAACTA  986

seq1  TACAGTTGATGTAGCTGATGCAGAGATGGCTATGGAAAGCTAGTGAAGGC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGATGTAGCTGATGCAGAGATGGCTATGGAAAGCTAGTGAAGGC  1036

seq1  TTGAGAGGTAGAGGGGAGCAAGATTTTGAAAAGTATGCCTGAACATTTTC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGTAGAGGGGAGCAAGATTTTGAAAAGTATGCCTGAACATTTTC  1086

seq1  TCTTTATCTCATAAGTAAGGCAGATCCAGTGAAGAATTC  1119
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTCATAAGTAAGGCAGATCCAGTGAAGAATTC  1125


seq1: chr6_77185304_77185837
seq2: B6Ng01-291I17.g_65_598

seq1  GAATTCATGGTAGAAGATTAAGAAGTAGTTCCCAAGAATAGGGGTCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTAGAAGATTAAGAAGTAGTTCCCAAGAATAGGGGTCAGTT  50

seq1  TGAAGGAAGATATAAATTAATCTGAATGTGCTGGAATTCCACATAGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAGATATAAATTAATCTGAATGTGCTGGAATTCCACATAGAATT  100

seq1  CATGGAATGGATGGGGGCAAGGAAATCCATACAAAGTAGATCTGTGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATGGATGGGGGCAAGGAAATCCATACAAAGTAGATCTGTGAAAG  150

seq1  GAATCCATGCTCATGGCATAAGCCAGTATGAATCCATCTGGAAATGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATGCTCATGGCATAAGCCAGTATGAATCCATCTGGAAATGGTTG  200

seq1  GGCCTTCCTTATTTCTGACTATCCTTCAATATAATATGATTAGTTTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCTTATTTCTGACTATCCTTCAATATAATATGATTAGTTTTCTA  250

seq1  TGGAATATTGATTAGATAAATAATCAAATCAGTTAATAAACTCAACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATTGATTAGATAAATAATCAAATCAGTTAATAAACTCAACAAGA  300

seq1  GTGAACCAGTAAGTATGCTAGACTTTCCTAAGAAAGATTCAGGAACATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCAGTAAGTATGCTAGACTTTCCTAAGAAAGATTCAGGAACATTA  350

seq1  CCAGTATTATGTGGTAATCCATATTCCATGTATGTAGGGTTCCTCATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTATGTGGTAATCCATATTCCATGTATGTAGGGTTCCTCATATC  400

seq1  TTATCTTTTATGTGTACAGGTAGAAGGTAGAGGATCTTAAAATCAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTATGTGTACAGGTAGAAGGTAGAGGATCTTAAAATCAGAAAA  450

seq1  TTAATAGGTTTGTTCTTGAGGAATTTCATTTTCTTACATCATCTATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGGTTTGTTCTTGAGGAATTTCATTTTCTTACATCATCTATTTAT  500

seq1  GTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGA  534
      ||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGA  534


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