BAC Information

Click to search

BAC

Clone NameB6Ng01-292D15
Chromosome6 (Build37)
Map Location 61,824,834 - 61,825,955
singlet/doubletsinglet
Overlap geneC130092O11Rik
Upstream geneMmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292D15.bB6Ng01-292D15.g
ACCGA088919GA088920
length1,1251,154
definitionB6Ng01-292D15.b B6Ng01-292D15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgaaatccctcttgaaatgccactcagtcattgatgaatgag
aaccctcaaactcaggtcataccagactagcttttgacagtagaatgttt
ctgcccatgattaaatacgtaaatcttcgctgtcaaacacagctattgtt
tacatttgcacttctattaaaggaaactgtgtacaaatatgctatacact
cagctgaaaacctctcctgtgtgagcatgggtctgggcttttatgttgat
aagaccagtattagcagtgacaaacttgggataagcacaggcgttgttct
ttggttgaatacacgaatcaatatttcaacctaatcttcatacattatgc
ttagaaaagaatctaataatcttcaattgaagtatacatgtacaatgttt
atatgtactgatttttgatgtacagatatcgatataacatttatcaacta
cctatatacctattgtctgcctacctcttcggctttagaagaattttgtt
gtgttggaccttcacagtgctctagctacttgatgtattattattgtcat
catctgtgtataagctacttataaatttttcaaaactgggtatggttatt
tttgtctgttgagtctaattattgtgggactccctttttatggttttaaa
atttatttttagaattgattaacattgctttccaaaatatcaatctaaga
caaattaagcttttcgaaatgctgataatcactgatctatttaagcatac
ttataatgagaaattaagataacttttccatttgttagttgaactgttta
atctgagttatgactgcccgtgactatcacctgaattcagaatatatagt
ttctttcatttcctgaatattgttcagtgtgttgtagtaatccatttcaa
gtaaccctaggaagatagcttcctggctggtattggttctgccatgaata
agcggtcccatacttctcagttattttgaatgatgggttgtgtctcttct
tttcacatttatagagtaatgcatagttgtaggtcctctactacagcatt
ttattttatcactggcttgccagaatgtcaatcaatgtaagaaagcttat
gttagagagacacagtattattttg

gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ccaaaaccatccagtggaagaaagacagcattttcaacaattgggtgctg
gcaacaactgggttgttatcatgtaagaaagaatgcgaatcgatccatac
ttatctcctgtactaagtcaaatctaagtggatcaaggaactcacataaa
aacagagaacactgaaactatagaggagaagtggggaaagctgaggaata
gtggcacaggaaattcctgaacgaacagcattgggctgtgcttgttagaa
tcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61824834_61825955
seq2: B6Ng01-292D15.b_47_1171

seq1  GAATTCTGTGAAATCCCTCTTGAAATGCCACTCAGTCATTGATGAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAAATCCCTCTTGAAATGCCACTCAGTCATTGATGAATGAG  50

seq1  AACCCTCAAACTCAGGTCATACCAGACTAGCTTTTGACAGTAGAATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCAAACTCAGGTCATACCAGACTAGCTTTTGACAGTAGAATGTTT  100

seq1  CTGCCCATGATTAAATACGTAAATCTTCGCTGTCAAACACAGCTATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATGATTAAATACGTAAATCTTCGCTGTCAAACACAGCTATTGTT  150

seq1  TACATTTGCACTTCTATTAAAGGAAACTGTGTACAAATATGCTATACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGCACTTCTATTAAAGGAAACTGTGTACAAATATGCTATACACT  200

seq1  CAGCTGAAAACCTCTCCTGTGTGAGCATGGGTCTGGGCTTTTATGTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAAAACCTCTCCTGTGTGAGCATGGGTCTGGGCTTTTATGTTGAT  250

seq1  AAGACCAGTATTAGCAGTGACAAACTTGGGATAAGCACAGGCGTTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGTATTAGCAGTGACAAACTTGGGATAAGCACAGGCGTTGTTCT  300

seq1  TTGGTTGAATACACGAATCAATATTTCAACCTAATCTTCATACATTATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGAATACACGAATCAATATTTCAACCTAATCTTCATACATTATGC  350

seq1  TTAGAAAAGAATCTAATAATCTTCAATTGAAGTATACATGTACAATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAGAATCTAATAATCTTCAATTGAAGTATACATGTACAATGTTT  400

seq1  ATATGTACTGATTTTTGATGTACAGATATCGATATAACATTTATCAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACTGATTTTTGATGTACAGATATCGATATAACATTTATCAACTA  450

seq1  CCTATATACCTATTGTCTGCCTACCTCTTCGGCTTTAGAAGAATTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATACCTATTGTCTGCCTACCTCTTCGGCTTTAGAAGAATTTTGTT  500

seq1  GTGTTGGACCTTCACAGTGCTCTAGCTACTTGATGTATTATTATTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGACCTTCACAGTGCTCTAGCTACTTGATGTATTATTATTGTCAT  550

seq1  CATCTGTGTATAAGCTACTTATAAATTTTTCAAAACTGGGTATGGTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTATAAGCTACTTATAAATTTTTCAAAACTGGGTATGGTTATT  600

seq1  TTTGTCTGTTGAGTCTAATTATTGTGGGACTCCCTTTTTATGGTTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTTGAGTCTAATTATTGTGGGACTCCCTTTTTATGGTTTTAAA  650

seq1  ATTTATTTTTAGAATTGATTAACATTGCTTTCCAAAATATCAATCTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTAGAATTGATTAACATTGCTTTCCAAAATATCAATCTAAGA  700

seq1  CAAATTAAGCTTTTCGAAATGCTGATAATCACTGATCTATTTAAGCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAGCTTTTCGAAATGCTGATAATCACTGATCTATTTAAGCATAC  750

seq1  TTATAATGAGAAATTAAGATAACTTTTCCATTTGTTAGTTGAACTGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGAGAAATTAAGATAACTTTTCCATTTGTTAGTTGAACTGTTTA  800

seq1  ATCTGAGTTATGACTGCCCGTGACTATCACCTGAATTCAGAATATATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTTATGACTGCCCGTGACTATCACCTGAATTCAGAATATATAGT  850

seq1  TTCTTTCATTTCCTGAATATTGTTCAGTGTGTTGTAGTAATCCATTTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATTTCCTGAATATTGTTCAGTGTGTTGTAGTAATCCATTTCAA  900

seq1  GTAACCCTAGGAAGATAGCTTCCTGGCTGGTATTGGTTCTGCCATGAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCTAGGAAGATAGCTTCCTGGCTGGTATTGGTTCTGCCATGAATA  950

seq1  AGCGGTCCAATACTTCTCAGTTATTTTGAATGAT-GGTTGTGTCTCTTCT  999
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  AGCGGTCCCATACTTCTCAGTTATTTTGAATGATGGGTTGTGTCTCTTCT  1000

seq1  TTTCACATTTATAGAGTAATGCATAGTTGTAGGTCCTCTACTACAGCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTTATAGAGTAATGCATAGTTGTAGGTCCTCTACTACAGCATT  1050

seq1  T--ATTTATCACTGGCTTGCCAGAAATGTCAATC-ATGTAAGAAAGCTTA  1096
      |   ||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TTATTTTATCACTGGCTTGCCAG-AATGTCAATCAATGTAAGAAAGCTTA  1099

seq1  TGTTAAGAGA-ACACAAGTA-TATTTTG  1122
      |||| ||||| |||| |||| |||||||
seq2  TGTT-AGAGAGACAC-AGTATTATTTTG  1125


| Home | SequenceCutter | Blast | Download |