BAC Information

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BAC

Clone NameB6Ng01-292O23
Chromosome6 (Build37)14 (Build37)
Map Location 67,746,986 - 67,747,15252,995,354 - 52,996,464
singlet/doubletsingletsinglet
Overlap geneIgk
Upstream geneEG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072
Downstream geneIgkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292O23.bB6Ng01-292O23.g
ACCGA089443GA089444
length1,0521,126
definitionB6Ng01-292O23.b B6Ng01-292O23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,746,986 - 67,747,152)(52,995,354 - 52,996,464)
sequence
gaattctagttgatctgtctttatatgttacttagtctttatcccttgtg
acttttaatattctttcctttgttctgtacatttagtgttttgattatta
cgtggcaggaggattttcttttctggtacaatctctttggtgttctttaa
gcttcttgtatgtttataggcatctctttctttaggttagggaaatttcc
ttctgtgattttgctgaaggtattttctgggcctttgaattgggagtctt
ctactcctatgattcttaggtttggtctttttgtagtgtcctaaatttct
tggatattttatgttagaaactttttagcttcagcattttccatatcttc
taagcctgagattctctcttctatctcttatattctgttggtgctacctg
agtctgtagtttgggttctctttcctaggttttccatctccagaattgcc
tcagtttgtgttttccttattgcttctatttctgcttttaggtcttaggc
agttttattcattttcttcatctgtttgattgtatttccctgtaatttct
tatatttattcattattatttgattgtgtgttcctgtatttctttaaggg
atttatcatttcctctctaaaggcttctatcatcttcataaggttagatt
taaagtcattttcttttgcctcaggtgtgttaggatatccagggcttgct
gtagtaggataactgggtactggtggtgccatattaacttggcttttgtt
gattgttttcttaggctgtccttaacccattggttgttccttgtgttggg
aagcctagcagtccctgctgtcagcaggcctctgggattgcaaggaaagc
tggttggccctggtggcagcaggcttccaaggatgcaagcagaactatgg
tctggaaaatggagtgcaaaggggccagagcaaactgtctgctgctgggt
ttgcctagagggccagcgtccctcatagctgcagcctctgggatgaagtt
agagagatgagcaagagggtactggcttgccagggatgcaggaagaagag
ct
gaattccaggacagccagggctatacagagaaaccctgtcttgagaaaaa
acaaaccaaaaaaacaacaaaaaaccaaagagtcagagtctgactcggtg
ttactatcctctttcaaatcacagatgtaggtagcaacatgactcagtga
acaggtctggcattcatgtgagctgatgacctgagttcagttctcagaaa
ccaggttgagatatgttggtgcacagttgtaacctcagcgttccttaccc
atcgagatgggaagtgagaatagacgtggatagatgtggtgagttgggag
cgggggacatgaggatggcacagaagatcctgggacagccagcctggagt
acagagtatggctgaaacaagagagatccctcctcaacaggtggaaagag
aggactgaatcctctaaagtgtcctttgccttccacatgtacacacacac
acacacacacacacaccccacaccattcatacatgtaccacacacacata
gaggcactcaccccccccacatacaacatatatacatcacacatacacac
atcatacacacacttgcataccactcacacaccacaccatacacacatac
acacacatacaccattcacaaatataccacacacacatagagacactcac
cccctccacatacaacatacacatatcacacacacacacacatccatgcc
acatacacatgcacaccccacccttcataatatattaattacacacatga
cacacacatatcacatacatgccacacataaacacataacacacacacat
gtaagccaaataaaattaaaaagcaaaacccccttttaatacaaaacaca
gatgtagtgaactgcatctttttgaggcatgtctggtaatctacattggt
cttggccctcattatgtggcccaaacatgggctgagtctgatctttccac
ctccatggtgtactgacactactagtgtgttccccaccatgccagtgtac
agaacggcgctggaaacttcacgaaagtttcctctacatttccagtccgg
cgccccttcagcttttgtgtcaaagtttctttcgtcagttaagagagttc
agtttgttcctgctcattccacaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67746986_67747152
seq2: B6Ng01-292O23.b_858_1100

seq1  AGTCCCTGATGTGAGCAGGCCTCTGGGATTGCATCTAGATATGGTAGTCC  50
      |||||||| ||| ||||||||||||||||||||   | |  |||| | ||
seq2  AGTCCCTGCTGTCAGCAGGCCTCTGGGATTGCAAGGAAAGCTGGTTGGCC  50

seq1  CTGAAGTCAGCAGACTTCCAGGCATGCAGGCAGA------GT-TGGA---  90
      |||  | |||||| |||||| | ||||| |||||      || ||||   
seq2  CTGGTGGCAGCAGGCTTCCAAGGATGCAAGCAGAACTATGGTCTGGAAAA  100

seq1  ---AGTGC------------------------CTGGTGGCTT--------  105
         |||||                        ||| ||| ||        
seq2  TGGAGTGCAAAGGGGCCAGAGCAAACTGTCTGCTGCTGGGTTTGCCTAGA  150

seq1  ----CAG-----------------GCCTCTGGTTGCTGATGGTGGAG---  131
          |||                 ||||||||  | ||| | | |||   
seq2  GGGCCAGCGTCCCTCATAGCTGCAGCCTCTGG--GATGAAGTTAGAGAGA  198

seq1  -------------CCAGGCCT-CCAGGGATGCAGGAAGAGCTGAAGAGCT  167
                    | ||| | |||||||||||||||     ||||||||
seq2  TGAGCAAGAGGGTACTGGCTTGCCAGGGATGCAGGAA-----GAAGAGCT  243

seq1: chr14_52995354_52996464
seq2: B6Ng01-292O23.g_64_1189

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAGAAAAA  50

seq1  ACAAACCAAAAAAACAACAAAAAACCAAAGAGTCAGAGTCTGACTCGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAAAAAACAACAAAAAACCAAAGAGTCAGAGTCTGACTCGGTG  100

seq1  TTACTATCCTCTTTCAAATCACAGATGTAGGTAGCAACATGACTCAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATCCTCTTTCAAATCACAGATGTAGGTAGCAACATGACTCAGTGA  150

seq1  ACAGGTCTGGCATTCATGTGAGCTGATGACCTGAGTTCAGTTCTCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTGGCATTCATGTGAGCTGATGACCTGAGTTCAGTTCTCAGAAA  200

seq1  CCAGGTTGAGATATGTTGGTGCACAGTTGTAACCTCAGCGTTCCTTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGAGATATGTTGGTGCACAGTTGTAACCTCAGCGTTCCTTACCC  250

seq1  ATCGAGATGGGAAGTGAGAATAGACGTGGATAGATGTGGTGAGTTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAGATGGGAAGTGAGAATAGACGTGGATAGATGTGGTGAGTTGGGAG  300

seq1  CGGGGGACATGAGGATGGCACAGAAGATCCTGGGACAGCCAGCCTGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGACATGAGGATGGCACAGAAGATCCTGGGACAGCCAGCCTGGAGT  350

seq1  ACAGAGTATGGCTGAAACAAGAGAGATCCCTCCTCAACAGGTGGAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTATGGCTGAAACAAGAGAGATCCCTCCTCAACAGGTGGAAAGAG  400

seq1  AGGACTGAATCCTCTAAAGTGTCCTTTGCCTTCCACATGTACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAATCCTCTAAAGTGTCCTTTGCCTTCCACATGTACACACACAC  450

seq1  ACACACACACACACACCCCACACCATTCATACATGTACCACACACACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACCCCACACCATTCATACATGTACCACACACACATA  500

seq1  GAGGCACTCACCCCCCCCACATACAACATATATACATCACACATACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTCACCCCCCCCACATACAACATATATACATCACACATACACAC  550

seq1  ATCATACACACACTTGCATACCACTCACACACCACACCATACACACATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACACACACTTGCATACCACTCACACACCACACCATACACACATAC  600

seq1  ACACACATACACCATTCACAAATATACCACACACACATAGAGACACTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACACCATTCACAAATATACCACACACACATAGAGACACTCAC  650

seq1  CCCCTCCACATACAACATACACATATCACACACACACACACATCCATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCACATACAACATACACATATCACACACACACACACATCCATGCC  700

seq1  ACATACACATGCACACCCCA-CCTTCATAATATATTAATTACACACATGA  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATACACATGCACACCCCACCCTTCATAATATATTAATTACACACATGA  750

seq1  CACACACATATCACATACATGCCACACATAAACACATAACACACACACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATATCACATACATGCCACACATAAACACATAACACACACACAT  800

seq1  GTAAGCCAAATAAAATTAAAAAGCAAAACCCCCTTTTAATACAAAACACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAAATAAAATTAAAAAGCAAAACCCCCTTTTAATACAAAACACA  850

seq1  GATGTAGTGAACTGCATCTTTTTGAGGCATGTCTGGTAATCTACATTGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGTGAACTGCATCTTTTTGAGGCATGTCTGGTAATCTACATTGGT  900

seq1  CTTGG-CCTCATTATGTGG-CCAAACATGGGCTGAGTCTGATCTTTCCAC  947
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTGGCCCTCATTATGTGGCCCAAACATGGGCTGAGTCTGATCTTTCCAC  950

seq1  CTCCATGGTTGTACTGACACTACTAGTGTGTT-CCCACCATGCCAGGTGT  996
      |||||||| ||||||||||||||||||||||| |||||||||||| ||||
seq2  CTCCATGG-TGTACTGACACTACTAGTGTGTTCCCCACCATGCCA-GTGT  998

seq1  ACAG-ACAGCGCTGGAAAC-TCACG-AAGGTTCCTCTACCATCCCAG--C  1041
      |||| || ||||||||||| ||||| ||| |||||||||  | ||||  |
seq2  ACAGAACGGCGCTGGAAACTTCACGAAAGTTTCCTCTACATTTCCAGTCC  1048

seq1  CGCGCCC--TCAGCTTTTGTG-CAA--GTTCTTTGGTCAGTCAA-AGAG-  1084
       ||||||  |||||||||||| |||   |||||| |||||| || |||| 
seq2  GGCGCCCCTTCAGCTTTTGTGTCAAAGTTTCTTTCGTCAGTTAAGAGAGT  1098

seq1  TCAGTTTGTTTCTGCT-ATTCTACAAAG  1111
      |||||||||| ||||| |||| ||||||
seq2  TCAGTTTGTTCCTGCTCATTCCACAAAG  1126