BAC Information

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BAC

Clone NameB6Ng01-293F19
Chromosome6 (Build37)
Map Location 124,736,153 - 124,882,204
singlet/doubletdoublet
Overlap geneSpsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2
Upstream geneEG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23
Downstream geneEG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293F19.bB6Ng01-293F19.g
ACCGA089764GA089765
length950767
definitionB6Ng01-293F19.b B6Ng01-293F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,881,253 - 124,882,204)(124,736,153 - 124,736,918)
sequence
gaattctcacatcaggaacatgggatcctcaggctccacgtccctcatga
agcggaacatcgtgatctcagctccagggggctccacactgtgaagatac
ggaggctgtgtttcctgcaggcggccaggcttatgcacaccagctcagtg
ttgctactcttaaggctgcctcttgcatacactatcactgacccctccaa
actccagggaagatccttcgccaggtgagccatataacctatgagacctg
agagccagcagctctccaagccggtcatggaatttttcccaagcctctta
gtggtgcccctccacccccgcccgccatcctctcttccccgagccacggt
cagctcctcctccgacgccagactcgatgagaatctcgaacggcggcccg
ccaccccattaatgacccccaactactccgccttctgctggcactgggcg
ctaccaggcctccccgggcaggcctcactgcccaccgatccgggccgcca
ctgccccagcccgtgcctcccgccgggcgagccggagaggaaggtccact
cccgggatcgcatccctgcagccgtgcgggccgcggcgccctggcctcac
cggtccccgactccggctcagcggcccatccggccggcctctcctcgggg
cgctgcaggagcagggtcgcggcccgggacgcaaggattggtccgcgcgg
cagcttctcgcctcccgcaccgcctcctgccttcgcctgccacctccgta
cccccgccctcggcccgagaagccgatcttcggtcaggcccgaacggaag
tgacgtcacgacggacggccccgggggcgggctgcgggagctccgcccac
ctgcttgggagggagggcggcgcgcgcgccgtgagccccggaggcgggtc
ctctggggcgggtggggagtgtcattaacttgcctcggggatctggggac

gaattcactggaggagggaaagagactcgtggtaggatgtgatcaatggg
acagggcatggttttatcccataagaaataggtagacatgctagaaacac
ccttttcataggggtgactcttacttggggccaggctgtgagagctaagt
ccccatccagggacagtctagtgcagcctctgccttcaagggctctacag
tgttggggttaagtacacaggcaatccagtacaattaaaacaggtgccat
cgaggctggagagatggctcagcaattcagagcactaactgctcttccag
aggtcttgagttcaaatcccagcaaccaaatggtggctcacaaccatcta
taatgagatctgatgctcctctggtgtgtctgaagacagcaatagtgtac
ttagacataaaataaataaataaatcttttaaaaaaaggtgccagcataa
ctctgactagcctaatgaggcttttactgagtggcaggaaagttttgtta
ctgttgttgctatttgtttccgttcttcatgctatagatggaacccaggg
tcctaactgtgcttagcaaacactctaccactgaaccacaccctaaacct
aaggaggtaattttacagtatttgtataaacacattattatatatttggg
atacagattgaggaggcaccttgtaccacaggcctgaagaaagagctcga
tgcccactcaaggaaagcaggtggctctccaggctggaacaataggtgtc
ctgcgggggtgtgtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124881253_124882204
seq2: B6Ng01-293F19.b_47_996 (reverse)

seq1  GTCCCCAGATCCCCGAGCCAGCTTAATGACACCTCCCACCCGCCCCAGAG  50
      ||||||||||||||||| ||  ||||||||||  ||||||||||||||||
seq2  GTCCCCAGATCCCCGAGGCAAGTTAATGACACTCCCCACCCGCCCCAGAG  50

seq1  GACCCGCCCTCCGGGGCTCCACGGCGCGCGCGCCGCCCTCCCTCCCAAGC  100
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  GACCCG-CCTCCGGGGCT-CACGGCGCGCGCGCCGCCCTCCCTCCCAAGC  98

seq1  AGGTGGGCGGAGCTCCCGCAGCCCGCCCCCGGGGCCGTCCGTCGTGACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCGGAGCTCCCGCAGCCCGCCCCCGGGGCCGTCCGTCGTGACGT  148

seq1  CACTTCCGTTCGGGCCTGACCGAAGATCGGCTTCTCGGGCCGAGGGCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCGTTCGGGCCTGACCGAAGATCGGCTTCTCGGGCCGAGGGCGGG  198

seq1  GGTACGGAGGTGGCAGGCGAAGGCAGGAGGCGGTGCGGGAGGCGAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACGGAGGTGGCAGGCGAAGGCAGGAGGCGGTGCGGGAGGCGAGAAGC  248

seq1  TGCCGCGCGGACCAATCCTTGCGTCCCGGGCCGCGACCCTGCTCCTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCGCGGACCAATCCTTGCGTCCCGGGCCGCGACCCTGCTCCTGCAG  298

seq1  CGCCCCGAGGAGAGGCCGGCCGGATGGGCCGCTGAGCCGGAGTCGGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCGAGGAGAGGCCGGCCGGATGGGCCGCTGAGCCGGAGTCGGGGAC  348

seq1  CGGTGAGGCCAGGGCGCCGCGGCCCGCACGGCTGCAGGGATGCGATCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGGCCAGGGCGCCGCGGCCCGCACGGCTGCAGGGATGCGATCCCG  398

seq1  GGAGTGGACCTTCCTCTCCGGCTCGCCCGGCGGGAGGCACGGGCTGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGACCTTCCTCTCCGGCTCGCCCGGCGGGAGGCACGGGCTGGGGC  448

seq1  AGTGGCGGCCCGGATCGGTGGGCAGTGAGGCCTGCCCGGGGAGGCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCGGCCCGGATCGGTGGGCAGTGAGGCCTGCCCGGGGAGGCCTGGT  498

seq1  AGCGCCCAGTGCCAGCAGAAGGCGGAGTAGTTGGGGGTCATTAATGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCCAGTGCCAGCAGAAGGCGGAGTAGTTGGGGGTCATTAATGGGGT  548

seq1  GGCGGGCCGCCGTTCGAGATTCTCATCGAGTCTGGCGTCGGAGGAGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGCCGCCGTTCGAGATTCTCATCGAGTCTGGCGTCGGAGGAGGAGC  598

seq1  TGACCGTGGCTCGGGGAAGAGAGGATGGCGGGCGGGGGTGGAGGGGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTGGCTCGGGGAAGAGAGGATGGCGGGCGGGGGTGGAGGGGCACC  648

seq1  ACTAAGAGGCTTGGGAAAAATTCCATGACCGGCTTGGAGAGCTGCTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGGCTTGGGAAAAATTCCATGACCGGCTTGGAGAGCTGCTGGCT  698

seq1  CTCAGGTCTCATAGGTTATATGGCTCACCTGGCGAAGGATCTTCCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCTCATAGGTTATATGGCTCACCTGGCGAAGGATCTTCCCTGGA  748

seq1  GTTTGGAGGGGTCAGTGATAGTGTATGCAAGAGGCAGCCTTAAGAGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGGGGTCAGTGATAGTGTATGCAAGAGGCAGCCTTAAGAGTAGC  798

seq1  AACACTGAGCTGGTGTGCATAAGCCTGGCCGCCTGCAGGAAACACAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAGCTGGTGTGCATAAGCCTGGCCGCCTGCAGGAAACACAGCCT  848

seq1  CCGTATCTTCACAGTGTGGAGCCCCCTGGAGCTGAGATCACGATGTTCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATCTTCACAGTGTGGAGCCCCCTGGAGCTGAGATCACGATGTTCCG  898

seq1  CTTCATGAGGGACGTGGAGCCTGAGGATCCCATGTTCCTGATGTGAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGAGGGACGTGGAGCCTGAGGATCCCATGTTCCTGATGTGAGAAT  948

seq1  TC  952
      ||
seq2  TC  950

seq1: chr6_124736153_124736918
seq2: B6Ng01-293F19.g_68_834

seq1  GAATTCACTGGAGGAGGGAAAGAGACTCGTGGTAGGATGTGATCAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAGGAGGGAAAGAGACTCGTGGTAGGATGTGATCAATGGG  50

seq1  ACAGGGCATGGTTTTATCCCATAAGAAATAGGTAGACATGCTAGAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCATGGTTTTATCCCATAAGAAATAGGTAGACATGCTAGAAACAC  100

seq1  CCTTTTCATAGGGGTGACTCTTACTTGGGGCCAGGCTGTGAGAGCTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCATAGGGGTGACTCTTACTTGGGGCCAGGCTGTGAGAGCTAAGT  150

seq1  CCCCATCCAGGGACAGTCTAGTGCAGCCTCTGCCTTCAAGGGCTCTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCAGGGACAGTCTAGTGCAGCCTCTGCCTTCAAGGGCTCTACAG  200

seq1  TGTTGGGGTTAAGTACACAGGCAATCCAGTACAATTAAAACAGGTGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGTTAAGTACACAGGCAATCCAGTACAATTAAAACAGGTGCCAT  250

seq1  CGAGGCTGGAGAGATGGCTCAGCAATTCAGAGCACTAACTGCTCTTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCTGGAGAGATGGCTCAGCAATTCAGAGCACTAACTGCTCTTCCAG  300

seq1  AGGTCTTGAGTTCAAATCCCAGCAACCAAATGGTGGCTCACAACCATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTGAGTTCAAATCCCAGCAACCAAATGGTGGCTCACAACCATCTA  350

seq1  TAATGAGATCTGATGCTCCTCTGGTGTGTCTGAAGACAGCAATAGTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGATCTGATGCTCCTCTGGTGTGTCTGAAGACAGCAATAGTGTAC  400

seq1  TTAGACATAAAATAAATAAATAAATCTTTTAAAAAAAGGTGCCAGCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATAAAATAAATAAATAAATCTTTTAAAAAAAGGTGCCAGCATAA  450

seq1  CTCTGACTAGCCTAATGAGGCTTTTACTGAGTGGCAGGAAAGTTTTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTAGCCTAATGAGGCTTTTACTGAGTGGCAGGAAAGTTTTGTTA  500

seq1  CTGTTGTTGCTATTTGTTTCCGTTCTTCATGCTATAGATGGAACCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTGCTATTTGTTTCCGTTCTTCATGCTATAGATGGAACCCAGGG  550

seq1  TCCTAACTGTGCTTAGCAAACACTCTACCACTGAACCACACCCTAAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTGTGCTTAGCAAACACTCTACCACTGAACCACACCCTAAACCT  600

seq1  AAGGAGGTAATTTTACAGTATTTGTATAAACACATTATTATATATTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTAATTTTACAGTATTTGTATAAACACATTATTATATATTTGGG  650

seq1  ATACAGATTGAGGAGGCACC-TGTACCACAGGCCTGAAGAAAGAGCTCGA  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATACAGATTGAGGAGGCACCTTGTACCACAGGCCTGAAGAAAGAGCTCGA  700

seq1  TGCCCACTCAAGGAAAGCAGGTGGCTCTCCAGGCTGGAACAGTAGGTGTC  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCCCACTCAAGGAAAGCAGGTGGCTCTCCAGGCTGGAACAATAGGTGTC  750

seq1  CTGCGGGGGTGTGTGCA  766
      |||||||||||||||||
seq2  CTGCGGGGGTGTGTGCA  767