BAC Information

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BAC

Clone NameB6Ng01-293L06
Chromosome6 (Build37)
Map Location 96,608,109 - 96,805,446
singlet/doubletdoublet
Overlap geneC130034I18Rik
Upstream geneSuclg2, LOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
Downstream geneA130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293L06.bB6Ng01-293L06.g
ACCGA090018GA090019
length1,1091,103
definitionB6Ng01-293L06.b B6Ng01-293L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,608,109 - 96,609,209)(96,804,357 - 96,805,446)
sequence
gaattcattgtttgggttcctctgttgtgcaaaactttactttggaagac
aattctgctaacacacagtatgtgtgggtcatgtttttctgctctggaac
cagaagctataactcaatgtaagagctagcctaaagggctacatttgtta
gctcacccgcatccatgactttatgtagtagtatcctctgaagaaaccta
gaggaaaaaaaaaaagcaggaaagcagaccatatcagaatcaggcagcca
tccagtaagacagtgcaaatgtttgtaaatgtcagattcaatttggattt
atccaagtcacttacacaaatgtatgaaccatcaaattgtgtttgcattt
aacttgttcaagtttggggaatttggtacctaccatctgcctactgtgcc
tgcacatttggggtgcacaaatttttatctcgtgggaatgatagtaaagg
gatcaatgtgtatgactaataacagctttaagctcatgcccaatgtacca
tgaataatgtggtaacataattggaatatatatatcttcagccagagttc
tgttcttgaaaaaaggaaaagtgaagcttgctctaagtcaaagactttta
aaagcgagtcaagttcatttgttgacacttggagatcttggatttacctc
ttcatcaacccctcaagcacactgagaagttaactactcagcatttttcc
agcatggagtgacaagtgctttcaccaacacacagccaacatcttttttt
tttttttttttgattaaatcgtgtagctttcacaaagcaatatagtgatt
tttatagtgcaatatattacgccaccttgcccactgtcactgatacaggt
aagttatggaggttataaatatttgtttataggagtagaaatagtccaat
cctcacataacagcgtgtctctactaatttaagcttggcagtttccattt
caaaagctcttagggtctgtttgaacataaggaatgtgttcattatcatt
ttgcatgagctgctttccttctaaacggagtgtttagtgttagtaaattg
tgagggtatctcatatattttctaaattacaaaggagatgtgataatagc
cagacctaa
gaattcaaagaaagaatttcctggcctcaaatggtactagtgccaaggct
gagaaaccctgacttggaagtctctaatattcatacatgtatttgttgat
agcgtttggcaaggaggaagcactcagatcattaaaaacaaaaaaatcca
ccacggacttacatagcagctcattagggctatgtgagcttgtggaataa
tattgctgtgtgcgtaggaaaataaacaaatacagtttatttttgttttt
gtttttttgagataggtttctctgtatagccctggctgtcctggaactca
ctttgtagactcagaaatccgcctgcctctgcctcccaagtgctggattt
aaaggtgtacaccactgccgcccagctacaaatacaatttctagaaggta
ctttagctctttactgcttacagtagttaggtgggtcatcctaaaacatg
taatcgatagcgtcccttgcaaagaacactgagtgtgttgaaacagcagc
agcaagcacagattttaacatgttataatctcagtgcagagtatcaagga
ggtatattctaggaagatgtttcaagatctcctcattcatactttgaggt
tatagagagcattgcagtctattgtcactgccattgtttacacagaagaa
cttgacagcaagaccttgttgttaaagacgctttacactagaatcctagc
acatggagaaatctggctggtgctccattagacgcttcatccccactgct
tattgaacataatgctggaaggtgctatgcgtgctgcctgaggagaaagt
agtcagcgctccacccaggcatggacctcacaagctatgagaataatttg
cttggcaagatgtgcccaccagtgcagcagtggcaggaatgtcatgagaa
tgatcactttcttgactgaatttaaaacctgttccatgaggtgggatcta
taactgacactgtcaaggaggctagaaccagtggctattaaggatcattg
accctaggggaaccctactactgttatctgctaaatgaacatagtgatat
gacttattgaatatacctcatagatctgggccatcgctgaacactttacc
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_96608109_96609209
seq2: B6Ng01-293L06.b_48_1156

seq1  GAATTCATTGTTTGGGTTCCTCTGTTGTGCAAAACTTTACTTTGGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTGGGTTCCTCTGTTGTGCAAAACTTTACTTTGGAAGAC  50

seq1  AATTCTGCTAACACACAGTATGTGTGGGTCATGTTTTTCTGCTCTGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGCTAACACACAGTATGTGTGGGTCATGTTTTTCTGCTCTGGAAC  100

seq1  CAGAAGCTATAACTCAATGTAAGAGCTAGCCTAAAGGGCTACATTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTATAACTCAATGTAAGAGCTAGCCTAAAGGGCTACATTTGTTA  150

seq1  GCTCACCCGCATCCATGACTTTATGTAGTAGTATCCTCTGAAGAAACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCCGCATCCATGACTTTATGTAGTAGTATCCTCTGAAGAAACCTA  200

seq1  GAGGAAAAAAAAAAAGCAGGAAAGCAGACCATATCAGAATCAGGCAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAAAAAAAGCAGGAAAGCAGACCATATCAGAATCAGGCAGCCA  250

seq1  TCCAGTAAGACAGTGCAAATGTTTGTAAATGTCAGATTCAATTTGGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAAGACAGTGCAAATGTTTGTAAATGTCAGATTCAATTTGGATTT  300

seq1  ATCCAAGTCACTTACACAAATGTATGAACCATCAAATTGTGTTTGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTCACTTACACAAATGTATGAACCATCAAATTGTGTTTGCATTT  350

seq1  AACTTGTTCAAGTTTGGGGAATTTGGTACCTACCATCTGCCTACTGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTCAAGTTTGGGGAATTTGGTACCTACCATCTGCCTACTGTGCC  400

seq1  TGCACATTTGGGGTGCACAAATTTTTATCTCGTGGGAATGATAGTAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTTGGGGTGCACAAATTTTTATCTCGTGGGAATGATAGTAAAGG  450

seq1  GATCAATGTGTATGACTAATAACAGCTTTAAGCTCATGCCCAATGTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGTGTATGACTAATAACAGCTTTAAGCTCATGCCCAATGTACCA  500

seq1  TGAATAATGTGGTAACATAATTGGAATATATATATCTTCAGCCAGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATGTGGTAACATAATTGGAATATATATATCTTCAGCCAGAGTTC  550

seq1  TGTTCTTGAAAAAAGGAAAAGTGAAGCTTGCTCTAAGTCAAAGACTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGAAAAAAGGAAAAGTGAAGCTTGCTCTAAGTCAAAGACTTTTA  600

seq1  AAAGCGAGTCAAGTTCATTTGTTGACACTTGGAGATCTTGGATTTACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGAGTCAAGTTCATTTGTTGACACTTGGAGATCTTGGATTTACCTC  650

seq1  TTCATCAACCCCTCAAGCACACTGAGAAGTTAACTACTCAGCATTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAACCCCTCAAGCACACTGAGAAGTTAACTACTCAGCATTTTTCC  700

seq1  AGCATGGAGTGACAAGTGCTTTCACCAACACACAGCCAACATCTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGAGTGACAAGTGCTTTCACCAACACACAGCCAACATCTTTTTTT  750

seq1  TTTTTTTTTTTGATTAAATCGTGTAGCTTTCACAAAGCAATATAGTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGATTAAATCGTGTAGCTTTCACAAAGCAATATAGTGATT  800

seq1  TTTATAGTGCAATATATTACGCCACCTTG-CCACTGTCACTGATACA-GT  848
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  TTTATAGTGCAATATATTACGCCACCTTGCCCACTGTCACTGATACAGGT  850

seq1  AAGTTATGGAGGTTATAAATA-TTGTTTATAGGAGTAG-AATAGTCCATT  896
      ||||||||||||||||||||| |||||||||||||||| ||||||||| |
seq2  AAGTTATGGAGGTTATAAATATTTGTTTATAGGAGTAGAAATAGTCCAAT  900

seq1  CCTCACAT-ACAGCGTGTCTCTACTAA-TTAAGCTTGGCAG-TTCCATTT  943
      |||||||| |||||||||||||||||| ||||||||||||| ||||||||
seq2  CCTCACATAACAGCGTGTCTCTACTAATTTAAGCTTGGCAGTTTCCATTT  950

seq1  CAAAAGCTCTTAGGGTCTGTTTG-ACAT-AGGAATGTG-TCATTATCATT  990
      ||||||||||||||||||||||| |||| ||||||||| |||||||||||
seq2  CAAAAGCTCTTAGGGTCTGTTTGAACATAAGGAATGTGTTCATTATCATT  1000

seq1  TTGCATGAGCTGC-TTCCTTCTAAACCGAAGTG-TTAGTGTTTAGTAAAA  1038
      ||||||||||||| ||||||||||| || |||| |||||| ||||| |||
seq2  TTGCATGAGCTGCTTTCCTTCTAAA-CGGAGTGTTTAGTG-TTAGT-AAA  1047

seq1  TTGTGAGGGTATCTCCATATATTTTCTAAATACAAAAAGAGATGTGATAA  1088
      |||||||||||||| ||||||||||||||||   ||| ||||||||||||
seq2  TTGTGAGGGTATCT-CATATATTTTCTAAATTACAAAGGAGATGTGATAA  1096

seq1  TAGGCAGAACTAA  1101
      ||| |||| ||||
seq2  TAGCCAGACCTAA  1109

seq1: chr6_96804357_96805446
seq2: B6Ng01-293L06.g_80_1170 (reverse)

seq1  TCTGGT-AAGTGTTCAGCGAT-GCCCAGATCTATGA-GTATA-TCAATAA  46
      |||||| |||||||||||||| |||||||||||||| ||||| |||||||
seq2  TCTGGTAAAGTGTTCAGCGATGGCCCAGATCTATGAGGTATATTCAATAA  50

seq1  GTCATTATCACTATGTTCATTTAGCAGAATAACAGTAGTAGGGTTTCCCC  96
      |||| |||||||||||||||||||||| ||||||||||||||| ||||||
seq2  GTCA-TATCACTATGTTCATTTAGCAG-ATAACAGTAGTAGGG-TTCCCC  97

seq1  TAGGGTCAATGAT-CTTTATAGCCACTGGTTCTTAGCCTCCTTGACAGTG  145
      ||||||||||||| ||| |||||||||||||| |||||||||||||||||
seq2  TAGGGTCAATGATCCTTAATAGCCACTGGTTC-TAGCCTCCTTGACAGTG  146

seq1  TCAGTTATAGATCCCACCTCATGGAACAGGTTTTTAAATTCAGTCAAG-A  194
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TCAGTTATAGATCCCACCTCATGGAACAGG-TTTTAAATTCAGTCAAGAA  195

seq1  AGTGATCATTCTCATGACATTCCTGCCACTGCTGCACTGGTGGGCACATC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCATTCTCATGACATTCCTGCCACTGCTGCACTGGTGGGCACATC  245

seq1  TTGCCAAGCAAATTATTCTCATAGCTTGTGAGGTCCATGCCTGGGTGGAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGCAAATTATTCTCATAGCTTGTGAGGTCCATGCCTGGGTGGAG  295

seq1  CGCTGACTACTTTCTCCTCAGGCAGCACGCATAGCACCTTCCAGCATTAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGACTACTTTCTCCTCAGGCAGCACGCATAGCACCTTCCAGCATTAT  345

seq1  GTTCAATAAGCAGTGGGGATGAAGCGTCTAATGGAGCACCAGCCAGATTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATAAGCAGTGGGGATGAAGCGTCTAATGGAGCACCAGCCAGATTT  395

seq1  CTCCATGTGCTAGGATTCTAGTGTAAAGCGTCTTTAACAACAAGGTCTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTGCTAGGATTCTAGTGTAAAGCGTCTTTAACAACAAGGTCTTG  445

seq1  CTGTCAAGTTCTTCTGTGTAAACAATGGCAGTGACAATAGACTGCAATGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGTTCTTCTGTGTAAACAATGGCAGTGACAATAGACTGCAATGC  495

seq1  TCTCTATAACCTCAAAGTATGAATGAGGAGATCTTGAAACATCTTCCTAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATAACCTCAAAGTATGAATGAGGAGATCTTGAAACATCTTCCTAG  545

seq1  AATATACCTCCTTGATACTCTGCACTGAGATTATAACATGTTAAAATCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCTCCTTGATACTCTGCACTGAGATTATAACATGTTAAAATCTG  595

seq1  TGCTTGCTGCTGCTGTTTCAACACACTCAGTGTTCTTTGCAAGGGACGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTGCTGCTGTTTCAACACACTCAGTGTTCTTTGCAAGGGACGCT  645

seq1  ATCGATTACATGTTTTAGGATGACCCACCTAACTACTGTAAGCAGTAAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATTACATGTTTTAGGATGACCCACCTAACTACTGTAAGCAGTAAAG  695

seq1  AGCTAAAGTACCTTCTAGAAATTGTATTTGTAGCTGGGCGGCAGTGGTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAGTACCTTCTAGAAATTGTATTTGTAGCTGGGCGGCAGTGGTGT  745

seq1  ACACCTTTAAATCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTAAATCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGT  795

seq1  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCTATCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCTATCTC  845

seq1  AAAAAAACAAAAACAAAAATAAACTGTATTTGTTTATTTTCCTACGCACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAACAAAAATAAACTGTATTTGTTTATTTTCCTACGCACA  895

seq1  CAGCAATATTATTCCACAAGCTCACATAGCCCTAATGAGCTGCTATGTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATATTATTCCACAAGCTCACATAGCCCTAATGAGCTGCTATGTAA  945

seq1  GTCCGTGGTGGATTTTTTTGTTTTTAATGATCTGAGTGCTTCCTCCTTGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTGGTGGATTTTTTTGTTTTTAATGATCTGAGTGCTTCCTCCTTGC  995

seq1  CAAACGCTATCAACAAATACATGTATGAATATTAGAGACTTCCAAGTCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGCTATCAACAAATACATGTATGAATATTAGAGACTTCCAAGTCAG  1045

seq1  GGTTTCTCAGCCTTGGCACTAGTACCATTTGAGGCCAGGAAATTCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCAGCCTTGGCACTAGTACCATTTGAGGCCAGGAAATTCT  1091