BAC Information

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BAC

Clone NameB6Ng01-294G23
Chromosome14 (Build37)6 (Build37)
Map Location 72,967,883 - 72,968,07833,246,984 - 33,248,135
singlet/doubletsingletsinglet
Overlap geneFndc3a
Upstream geneLOC100043136, LOC668477, LOC668482, LOC675957
Downstream geneLOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294G23.bB6Ng01-294G23.g
ACCGA090564GA090565
length3791,148
definitionB6Ng01-294G23.b B6Ng01-294G23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,967,883 - 72,968,078)(33,246,984 - 33,248,135)
sequence
caaatatcacacaatcatagaaactatgtgccactggcatattcacaccc
ctgctaaagcacaaggcaaatcatagctgctgtggacaatctaaagcaac
cccatatcctacacctaggattgaaacataaattacagaatgcccatgat
acatccccaaacccaaagaagttaaacaagaaggaaggcccgccaggtgg
tggcgcatgcctttaatcccagcacttgggaggcagaggcaggcaaattt
ctgagtttgaggccagcctggtctacaaagtgagttccaggacagccagg
gctatacagagaaatcctgtctcaaaaaaaaaaaaaaaaaaaaaaaagaa
ggaggaggaggaggaagaggaggaggaag
gaattccagaatactgtgattcattttccttaccctgtaatatatatact
gtcttcaaactcatagaaggttttataatagaaaatatgccatattcaga
gagggtaacatcagtttgttcattcattcattgtgtattgttctggtcct
cttatataaggatatgtaagaacatgtcctgtgggcctgttgttccttat
ggatcagagacattcttgtgctctcagaaggaactgagaaagaacttcag
ttaaactgtgaagtcatcaatgtttgaaatactgagatctacgaactgaa
gttgaagatttagtagggtcttctcagctttagctgatttgttctggagg
agctcaagagaagtttaaggaagaaacttggctttgaatccttgacttgt
agcacagccctatgttttacagtccaggtaggctcaggaagaccgttacg
ttagtgtaaatatggagtggagtcaggctagggcttaagatggtcgatca
ttgcagttatgtgattgctgcacacaatggccgtccttcttatattccta
gagagaatgtaagaacttttccgaaggtctgtcatgcactgtctactgaa
atattcacatttatgccttcttatccagctgtatactaggcgagcacggg
aagtggtgcatgctgggtggtgtcctgtgctaggtggtgcttctgtgtaa
ccagagactggacattgaaagggaaaggtctacttctgtttagcagatgg
gtagtagacaaactgctaggcccatagatggagctactgagttttggact
ccagagttacttcaggaatagatgtgaatgagttactgtcagttacctct
tgagtagtgtattctcctggcgacagtgtgaacagaatgatcagaggttc
agaaattgtagttagaatgctcatggacattcctgtttttttcttattat
tttaaaattatcttataaaataagagtctgtgacttttatcatacatccc
tcattttgtacttcttctcccacccttcatctcatcctatctccactgaa
acatttcatttaagtatcacattctactttggataccatgttataaggga
ctggaatttggatgggctgcgaacttgtggttatattaataaattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_72967883_72968078
seq2: B6Ng01-294G23.b_244_431

seq1  GCCAGGCAGTGGTGGCACATGCCTTTAATTCCAGCACTTGGGAGGCAGAG  50
      |||||   |||||||| |||||||||||| ||||||||||||||||||||
seq2  GCCAG---GTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAG  47

seq1  GCAGGCAGATTTCTGAGTTTGAGGCCAGCTTGGTCTATACAGAGTGAGTT  100
      ||||||| ||||||||||||||||||||| |||||  |||| ||||||||
seq2  GCAGGCAAATTTCTGAGTTTGAGGCCAGCCTGGTC--TACAAAGTGAGTT  95

seq1  TCAGGACAGACAGGGCTACACAGAGAAACCCTGTCTTGAAAAAGAAAAAA  150
       |||||||| |||||||| ||||||||| |||||||  ||||| ||||||
seq2  CCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCAAAAAAAAAAAAA  145

seq1  AAAATAGAAGAAGAAAAAGAAGGAGGAGGTGGAAG-GAAGAAGGAAG  196
      |||    || || || ||| ||||||||| ||||| | || ||||||
seq2  AAA----AAAAAAAAGAAGGAGGAGGAGGAGGAAGAGGAGGAGGAAG  188

seq1: chr6_33246984_33248135
seq2: B6Ng01-294G23.g_68_1214

seq1  GAATTCCAGAATACTGTGATTCATTTTCCTTACCCTGTAATATATATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATACTGTGATTCATTTTCCTTACCCTGTAATATATATACT  50

seq1  GTCTTCAAACTCATAGAAGGTTTTATAATAGAAAATATGCCATATTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAACTCATAGAAGGTTTTATAATAGAAAATATGCCATATTCAGA  100

seq1  GAGGGTAACATCAGTTTGTTCATTCATTCATTGTGTATTGTTCTGGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAACATCAGTTTGTTCATTCATTCATTGTGTATTGTTCTGGTCCT  150

seq1  CTTATATAAGGATATGTAAGAACATGTCCTGTGGGCCTGTTGTTCCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAAGGATATGTAAGAACATGTCCTGTGGGCCTGTTGTTCCTTAT  200

seq1  GGATCAGAGACATTCTTGTGCTCTCAGAAGGAACTGAGAAAGAACTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGAGACATTCTTGTGCTCTCAGAAGGAACTGAGAAAGAACTTCAG  250

seq1  TTAAACTGTGAAGTCATCAATGTTTGAAATACTGAGATCTACGAACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGTGAAGTCATCAATGTTTGAAATACTGAGATCTACGAACTGAA  300

seq1  GTTGAAGATTTAGTAGGGTCTTCTCAGCTTTAGCTGATTTGTTCTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGATTTAGTAGGGTCTTCTCAGCTTTAGCTGATTTGTTCTGGAGG  350

seq1  AGCTCAAGAGAAGTTTAAGGAAGAAACTTGGCTTTGAATCCTTGACTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGAGAAGTTTAAGGAAGAAACTTGGCTTTGAATCCTTGACTTGT  400

seq1  AGCACAGCCCTATGTTTTACAGTCCAGGTAGGCTCAGGAAGACCGTTACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCCCTATGTTTTACAGTCCAGGTAGGCTCAGGAAGACCGTTACG  450

seq1  TTAGTGTAAATATGGAGTGGAGTCAGGCTAGGGCTTAAGATGGTCGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTAAATATGGAGTGGAGTCAGGCTAGGGCTTAAGATGGTCGATCA  500

seq1  TTGCAGTTATGTGATTGCTGCACACAATGGCCGTCCTTCTTATATTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTATGTGATTGCTGCACACAATGGCCGTCCTTCTTATATTCCTA  550

seq1  GAGAGAATGTAAGAACTTTTCCGAAGGTCTGTCATGCACTGTCTACTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATGTAAGAACTTTTCCGAAGGTCTGTCATGCACTGTCTACTGAA  600

seq1  ATATTCACATTTATGCCTTCTTATCCAGCTGTATACTAGGCGAGCACGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACATTTATGCCTTCTTATCCAGCTGTATACTAGGCGAGCACGGG  650

seq1  AAGTGGTGCATGCTGGGTGGTGTCCTGTGCTAGGTGGTGCTTCTGTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTGCATGCTGGGTGGTGTCCTGTGCTAGGTGGTGCTTCTGTGTAA  700

seq1  CCAGAGACTGGACATTGAAAGGGAAAGGTCTACTTCTGTTTAGCAGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTGGACATTGAAAGGGAAAGGTCTACTTCTGTTTAGCAGATGG  750

seq1  GTAGTAGACAAACTGCTAGGCCCATAGATGGAGCTACTGAGTTTTGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGACAAACTGCTAGGCCCATAGATGGAGCTACTGAGTTTTGGACT  800

seq1  CCAGAGTTACTTCAGGAATAGATGTGAATGAGTTACTGTCAGTTACCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTACTTCAGGAATAGATGTGAATGAGTTACTGTCAGTTACCTCT  850

seq1  TGAGTAGTGTATTCTCCTGGCGACAGTGTGAACAGAATGATCAGAGGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGTGTATTCTCCTGGCGACAGTGTGAACAGAATGATCAGAGGTTC  900

seq1  AGAAATTGTAGTTAGAATGCTCATGGACATTCCTG-TTTTTTCTTA-TAT  948
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  AGAAATTGTAGTTAGAATGCTCATGGACATTCCTGTTTTTTTCTTATTAT  950

seq1  TTTAAAATTATCTTATAAAATAAGAGTTCTGTGACTTTTATCATACATCC  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTAAAATTATCTTATAAAATAAGAG-TCTGTGACTTTTATCATACATCC  999

seq1  CTCATTTTGTTAACTCTCCTCCCACCCTTCATCTCCATCCCTATCTCCAC  1048
      ||||||||| ||  ||| |||||||||||||||| ||| |||||||||||
seq2  CTCATTTTG-TACTTCTTCTCCCACCCTTCATCT-CAT-CCTATCTCCAC  1046

seq1  TGAAACATTTCCATTTTAGTATCACCATTTCTACTTT-GATACCATG-TA  1096
      |||||||||| ||||| ||||||||   ||||||||| ||||||||| ||
seq2  TGAAACATTT-CATTTAAGTATCAC--ATTCTACTTTGGATACCATGTTA  1093

seq1  TAAAGGACTGAAATTTTTGAATGGGCTGCAGACTGGTTGGTTATA-TAAT  1145
      ||| |||||| ||  |||| |||||||||  ||| | |||||||| ||||
seq2  TAAGGGACTGGAA--TTTGGATGGGCTGCGAACTTG-TGGTTATATTAAT  1140

seq1  AAATTCT  1152
      |||||||
seq2  AAATTCT  1147