BAC Information

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BAC

Clone NameB6Ng01-294O17
Chromosome6 (Build37)
Map Location 36,236,507 - 36,237,674
singlet/doubletsinglet
Overlap gene9330158H04Rik
Upstream geneSlc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294O17.bB6Ng01-294O17.g
ACCGA090921GA090922
length1,2071,171
definitionB6Ng01-294O17.b B6Ng01-294O17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgatctttccaagacttttatcatgaatgtgtgttggatcttg
tcgaatgctttttctgcatctaacgagatgatcatatggtttttgtcttt
gagtttgtttatatagtggattacgttgatggatttccatatattaaacc
atccctacatccctggaataaaaactacttggtcaggatggatgattgtt
ttgctgtgttcttagattcggttagtgagaattttattgaatatttctgc
attgatattgataaggaatttgctctgcagttctctatctttgtttggtc
tttctgtggtataggtatcagagtaattgtggtttcatagaatgaattgg
gtagagtaccttctccttctcttttgtggaatagtttgtgaagaacttga
attagatcttctttgaaggtcttatagaactctgcagtaaacccatctga
tcctgaacttttttgggttgggagactataaatgactgcttctatttcta
tagaggatataggactgtttagatcattaacctgatcctgatttaatttt
ggtacctggtatctgtctagaaatttgtccatttcatccagggtttccag
ttctgttgagtatagccttttgtagaaggatctgatggtgttttggattt
cttcaggatctgttattatgtctcctttttcatttctgattttgttaatt
aggatgctgtctctgtgccctgtagtgagtctggttaagagtttatccat
cttcttgattttctcaagaaccagctcctcatttggttgattctttgaat
agttcttcttgtttccacttggttgatttcgcccctgattttgattattt
cctgcagtctacttctcttgggtgaatttgctttcttttgctctagagct
tttaggtatgttgtcaagctgctagtgtgtgctctctctagttctttttg
gaagcactcagagctatgagctttcttcctggaaatgcttcatttgtgtc
ccatgagtctgggtatgttgtggtttcatttcattaactccaaaagtctt
attccttctctttttccttcttggaccagaaatatcgttgagatggagtg
ttgttcagtccacctgagttactttccatacctagtgttattgaagatac
ggctagcatgtgatcggagaagtccagggcaattcatactgtggcaattc
cgtgtag
gaattcaatacatgccatctccctattctcagacttttaaaaagaaccaa
ttctaaaatttgactgtacgtgaatggttttagaagcgactgaaaatgca
gattgcctagctacaggtctcctgcccacccagaatctgccagacagtaa
acactgactttccaggaatttaaatattgaagaaacattaagactgcact
agaggggatcttatacgtaaaacactaagaatcactgccccaaagactcc
agttaagcttactccttcctttggagactttttattttaaggagttaatt
gccatcatatataaagttcaaacagaaaattttcagtattttgttttgtt
ttgtttccctatcattacattgtttagggaatgtaagttgataaagggta
tggagagacctgaaatggtggggaggttactgggccaggttcaactcata
ggaagattctggtcattaggaaggtacaactttggagtaaacaaaaaaat
tttttaaagaaataagtatactttctaggtggaactaattcatagcaaca
cagcttgggaaataagtgttctttgtgggagaaaagaggcctgccaaatg
acattgtttgtcactgaggcccatgacaagctacacctcatagcccgtgc
atactaatcatctttagctgtcaccatctagcccagggactgggaattaa
gcaataaattcccgaataagaaaggaggaaggcagagggaagagatgaca
gctgtcttgagtagaaagaggaacacctaccacatgaaaggaaccgcatg
tagggaaggaagagaggcagcctttgtgaagtgctgctggaagggacagg
gagcacgtgtgggtccacagtggtccacagggcgagcgcgtggaggggtc
cacaaggcaagtgcaaggaaagggtccacagggcaagcgcatggaggggg
gtccacggtgctgctggaaggggcagcgagctcatggacagttctacagt
tactcttagaaatgggcagtggaggtgcatagaggggttccaccagcgag
tgccatagaaagagcggagatcatgaagagatagcacagcattctacgaa
gcacagaatgctactgttactcctcttctctatgcttagttaagagcctg
taagcaggctcctgaaatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36236507_36237674
seq2: B6Ng01-294O17.g_65_1235 (reverse)

seq1  AGGATTTCA-AAGCCTTGCTTTCACAGCTCCTGTAACTTAAGCCATAGAG  49
      |||||||||  |||| ||||| ||  ||||   |||| |||| |||||||
seq2  AGGATTTCAGGAGCC-TGCTTACA-GGCTC--TTAAC-TAAG-CATAGAG  44

seq1  AAGAGGAGTGACAGTAGCATCTTGTGC-TCGTAGAATCCTGTGCCTATCT  98
      ||||||||| ||||||||||  ||||| ||||||||| ||||| ||||||
seq2  AAGAGGAGTAACAGTAGCATTCTGTGCTTCGTAGAATGCTGTG-CTATCT  93

seq1  CTCAATGATCT-CGCTCTTTCTATGGGCACTCGCTGTTGG-ACCCCTCTA  146
      ||  ||||||| |||||||||||| ||||||||||| ||| |||||||||
seq2  CTTCATGATCTCCGCTCTTTCTAT-GGCACTCGCTGGTGGAACCCCTCTA  142

seq1  TGCAC--TCACTGCCC-CTTCTAGGAGT-ACTGTGGACCTGTCCATGAGC  192
      |||||   ||||||||  ||||| |||| ||||| || ||||||||||||
seq2  TGCACCTCCACTGCCCATTTCTAAGAGTAACTGTAGAACTGTCCATGAGC  192

seq1  TCGCTGCCCCTTCCAGCAGCACCGTGGACCCCCCTCCATGCGCTTGCCCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCCCCTTCCAGCAGCACCGTGGACCCCCCTCCATGCGCTTGCCCT  242

seq1  GTGGACCC-TTCCTTGCACTTGCCTTGTGGACCCCTCCACGCGCTCGCCC  291
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCCTTTCCTTGCACTTGCCTTGTGGACCCCTCCACGCGCTCGCCC  292

seq1  TGTGGACCACTGTGGA-CCACACGTGCTCCCTGTCCCTTCCAGCAGCACT  340
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTGGACCACTGTGGACCCACACGTGCTCCCTGTCCCTTCCAGCAGCACT  342

seq1  TCAC-AAGGCTGCCTCTCTTCCTTCCCTACATGCGGTTCCTTTCATGTGG  389
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGGCTGCCTCTCTTCCTTCCCTACATGCGGTTCCTTTCATGTGG  392

seq1  TAGGTGTTCCTCTTTCTACTCAAGACAGCTGTCATCTCTTCCCTCTGCCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTCCTCTTTCTACTCAAGACAGCTGTCATCTCTTCCCTCTGCCT  442

seq1  TCCTCCTTTCTTATTCGGGAATTTATTGCTTAATTCCCAGTCCCTGGGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTTCTTATTCGGGAATTTATTGCTTAATTCCCAGTCCCTGGGCT  492

seq1  AGATGGTGACAGCTAAAGATGATTAGTATGCACGGGCTATGAGGTGTAGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGACAGCTAAAGATGATTAGTATGCACGGGCTATGAGGTGTAGC  542

seq1  TTGTCATGGGCCTCAGTGACAAACAATGTCATTTGGCAGGCCTCTTTTCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGGGCCTCAGTGACAAACAATGTCATTTGGCAGGCCTCTTTTCT  592

seq1  CCCACAAAGAACACTTATTTCCCAAGCTGTGTTGCTATGAATTAGTTCCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAGAACACTTATTTCCCAAGCTGTGTTGCTATGAATTAGTTCCA  642

seq1  CCTAGAAAGTATACTTATTTCTTTAAAAAATTTTTTTGTTTACTCCAAAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAGTATACTTATTTCTTTAAAAAATTTTTTTGTTTACTCCAAAG  692

seq1  TTGTACCTTCCTAATGACCAGAATCTTCCTATGAGTTGAACCTGGCCCAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTTCCTAATGACCAGAATCTTCCTATGAGTTGAACCTGGCCCAG  742

seq1  TAACCTCCCCACCATTTCAGGTCTCTCCATACCCTTTATCAACTTACATT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCCCCACCATTTCAGGTCTCTCCATACCCTTTATCAACTTACATT  792

seq1  CCCTAAACAATGTAATGATAGGGAAACAAAACAAAACAAAATACTGAAAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAACAATGTAATGATAGGGAAACAAAACAAAACAAAATACTGAAAA  842

seq1  TTTTCTGTTTGAACTTTATATATGATGGCAATTAACTCCTTAAAATAAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTTGAACTTTATATATGATGGCAATTAACTCCTTAAAATAAAA  892

seq1  AGTCTCCAAAGGAAGGAGTAAGCTTAACTGGAGTCTTTGGGGCAGTGATT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCAAAGGAAGGAGTAAGCTTAACTGGAGTCTTTGGGGCAGTGATT  942

seq1  CTTAGTGTTTTACGTATAAGATCCCCTCTAGTGCAGTCTTAATGTTTCTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGTTTTACGTATAAGATCCCCTCTAGTGCAGTCTTAATGTTTCTT  992

seq1  CAATATTTAAATTCCTGGAAAGTCAGTGTTTACTGTCTGGCAGATTCTGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTAAATTCCTGGAAAGTCAGTGTTTACTGTCTGGCAGATTCTGG  1042

seq1  GTGGGCAGGAGACCTGTAGCTAGGCAATCTGCATTTTCAGTCGCTTCTAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGGAGACCTGTAGCTAGGCAATCTGCATTTTCAGTCGCTTCTAA  1092

seq1  AACCATTCACGTACAGTCAAATTTTAGAATTGGTTCTTTTTAAAAGTCTG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCACGTACAGTCAAATTTTAGAATTGGTTCTTTTTAAAAGTCTG  1142

seq1  AGAATAGGGAGATGGCATGTATTGAATTC  1168
      |||||||||||||||||||||||||||||
seq2  AGAATAGGGAGATGGCATGTATTGAATTC  1171