BAC Information

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BAC

Clone NameB6Ng01-295D23
Chromosome6 (Build37)
Map Location 93,092,223 - 93,222,395
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik, LOC384461
Downstream geneLOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295D23.bB6Ng01-295D23.g
ACCGA091164GA091165
length1,1331,100
definitionB6Ng01-295D23.b B6Ng01-295D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,092,223 - 93,093,361)(93,221,304 - 93,222,395)
sequence
gaattctctgaacttatgtctaagtgggctttagacctgacatttgcagg
cttcatataactgcttgaataactttccatttaagtgactcatacttaga
ggacttatccctggatcttgaagttgagacagttatgattcaaaaaaaaa
aaaaaaaaaaaactgcttctaaatcaaacttatctcagatctagggagaa
atagcagttgggaatattcattcctagaatgtggaaaattatctcttggc
agtggtttataacttacatcagtaagaaaaggaactggcggtgttccagt
gcaagtcaatttggtttacatttatcccttcatccaaataatggtcaata
aacacatactgtgcgtcgtgtaccatgctgccttatgaagatgccccaat
gaagagcttagcactgtctcctgcttcaggtacattatggcaaaagttag
acatagagaccctaggcactaacgatacaaacatgccataatgattacag
aagtttatgaagaagatgactgggaaaaaaaataaggcaggtcagtggga
agagaagcttggttggaatgttacatacatgctcattggaatggtacata
catgatggttgaaatgggcttttctagatagttgacaagggatatgaaat
gcagatgaaaaggggggaagaaagaccatatatctctcttctgactcatt
catcagtcctgtgctcttttcttttgagtttagacaccgttccagtggga
actcaactcaaagatcccgagaacataaatgcaaagagaatctaactgat
ctcatttcaatattaacttttcaaggcttttcatcaactgactcctttct
ctgacacacagacacctggagattgaaagactgagtcaactccccagcac
tgggggaggtctgaatcctgccccccagcaacagcctcaaagagtcatcg
ttagagagcctgcatagtccgctgggaccactcgagtcctaaagggtcac
ttctcttgtcttccagaccgctgtgagctacagaagcgaagtagctcctc
agggcactgaaagcatcaaaagatgtctcccagtgtggcacatgggtctc
agttgtgatttcaacagtactgatgtttagaaa
gaattcctctcttctggctgaagtttccgtttctgtgctatagaaggata
cctgggacaagagtgagagaggctcagcagtgctttaccctgtgccttta
atcagcttagtcctcactacagtttaatcaacaggagcgtcccttagaca
gaacagttattcttcattttgcatacagaaaatcagctcagtaccataga
ctcccaggtccatatcaatcagcatgtgaaagtgcacataaatacatctc
cagtctttattttgcaaagtcgtggagatgccacgtttaaggtttttttt
ttttttacagatttctgtgcatttctttgaacccatttattttctttcat
ctggtaaagaaaatatacagaacaggaaggaacattttattccctggccg
aatgctaacagctgcaactccagactgccccagagttctgtaaggtcatt
ttacaggggcagggaattcagccagtttgatgagagcccccgtactcttt
ttgtttcagctttatcaggcttgctactagtaagacaaagtgaccgtggc
tttcccatactatctgattgatgggaggagggatttttttgatttttttt
ttttttttgtatcacatcttcaaagaaggttatcagggaaaacatacctc
ccaaacagcagaaagatttcacagaagcaatttgctgcaggatggtttca
gtgtccagtaagagtgtcccgccataactccatccaattttcattctatg
gaaggcaacaatatatattgctcagttctgaaacaacacatattctattt
aaattaactctcttcaaattcagggactactatggggtcagcccaccttg
ctttccagcggtctctctttctaaataacaagcctccactgaaactttcc
tgtgttgacttcaccagcttcctttcccacccaaactacctgttcctctc
tcaagctttggtttatccatgaggataactgtggtagtcccctaatgccc
atactcttccaatcattacacatagatgaaggtataaaaaggctcctggc
tgctatccaacttggtaaaggcacctaaacacgcccgttccacattttgc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93092223_93093361
seq2: B6Ng01-295D23.b_46_1178

seq1  GAATTCTCTGAACTTATGTCTAAGTGGGCTTTAGACCTGACATTTGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAACTTATGTCTAAGTGGGCTTTAGACCTGACATTTGCAGG  50

seq1  CTTCATATAACTGCTTGAATAACTTTCCATTTAAGTGACTCATACTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATAACTGCTTGAATAACTTTCCATTTAAGTGACTCATACTTAGA  100

seq1  GGACTTATCCCTGGATCTTGAAGTTGAGACAGTTATGATTC-AAAAAAAA  149
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGACTTATCCCTGGATCTTGAAGTTGAGACAGTTATGATTCAAAAAAAAA  150

seq1  AAAAAAAAAAAACTGCTTCTAAATCAAACTTATCTCAGATCTAGGGAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACTGCTTCTAAATCAAACTTATCTCAGATCTAGGGAGAA  200

seq1  ATAGCAGTTGGGAATATTCATTCCTAGAATGTGGAAAATTATCTCTTGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGTTGGGAATATTCATTCCTAGAATGTGGAAAATTATCTCTTGGC  250

seq1  AGTGGTTTATAACTTACATCAGTAAGAAAAGGAACTGGCGGTGTTCCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTATAACTTACATCAGTAAGAAAAGGAACTGGCGGTGTTCCAGT  300

seq1  GCAAGTCAATTTGGTTTACATTTATCCCTTCATCCAAATAATGGTCAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCAATTTGGTTTACATTTATCCCTTCATCCAAATAATGGTCAATA  350

seq1  AACACATACTGTGCGTCGTGTACCATGCTGCCTTATGAAGATGCCCCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATACTGTGCGTCGTGTACCATGCTGCCTTATGAAGATGCCCCAAT  400

seq1  GAAGAGCTTAGCACTGTCTCCTGCTTCAGGTACATTATGGCAAAAGTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTTAGCACTGTCTCCTGCTTCAGGTACATTATGGCAAAAGTTAG  450

seq1  ACATAGAGACCCTAGGCACTAACGATACAAACATGCCATAATGATTACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGACCCTAGGCACTAACGATACAAACATGCCATAATGATTACAG  500

seq1  AAGTTTATGAAGAAGATGACTGGGAAAAAAAATAAGGCAGGTCAGTGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATGAAGAAGATGACTGGGAAAAAAAATAAGGCAGGTCAGTGGGA  550

seq1  AGAGAAGCTTGGTTGGAATGTTACATACATGCTCATTGGAATGGTACATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCTTGGTTGGAATGTTACATACATGCTCATTGGAATGGTACATA  600

seq1  CATGATGGTTGAAATGGGCTTTTCTAGATAGTTGACAAGGGATATGAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGTTGAAATGGGCTTTTCTAGATAGTTGACAAGGGATATGAAAT  650

seq1  GCAGATGAAAAGGGGGGAAGAAAGACCATATATCTCTCTTCTGACTCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGAAAAGGGGGGAAGAAAGACCATATATCTCTCTTCTGACTCATT  700

seq1  CATCAGTCCTGTGCTCTTTTCTTTTGAGTTTAGACACCGTTCCAGTGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCCTGTGCTCTTTTCTTTTGAGTTTAGACACCGTTCCAGTGGGA  750

seq1  ACTCAACTCAAAGATCCCGAGAACATAAATGCAAAGAGAATCTAACTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACTCAAAGATCCCGAGAACATAAATGCAAAGAGAATCTAACTGAT  800

seq1  CTCATTTCAATATTAACTTTTCAAGGCTTTTCATCAACTGACTCCTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCAATATTAACTTTTCAAGGCTTTTCATCAACTGACTCCTTTCT  850

seq1  CTGACACACAGACACCTGGAGATTGAAAGACTGAGTCAACTCCCCAGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACACAGACACCTGGAGATTGAAAGACTGAGTCAACTCCCCAGCAC  900

seq1  T-GGGGAGGTCTGAATCCTGCCCCCCAGCAACAGCCTCAAAGAGTCATCG  948
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGTCTGAATCCTGCCCCCCAGCAACAGCCTCAAAGAGTCATCG  950

seq1  TTAGAGAGCCTGCATAGTCCGCTGGGACCACTCGAGGTCCTAAAGGGTCA  998
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAGAGAGCCTGCATAGTCCGCTGGGACCACTCGA-GTCCTAAAGGGTCA  999

seq1  CTTCTCTTGTCTTCCAGAACCGCTGTGAAGCTACAGAAGCGAAGTAGCTC  1048
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CTTCTCTTGTCTTCCAG-ACCGCTGTG-AGCTACAGAAGCGAAGTAGCTC  1047

seq1  TCCAGGGCACTGAAAAGCATCAAAAGATGTTCTTCCCCAGTGT-GCACAT  1097
        |||||||||| |||||||||||||||| |||  |||||||| ||||| 
seq2  CTCAGGGCACTG-AAAGCATCAAAAGATG-TCT--CCCAGTGTGGCACA-  1092

seq1  TGGGTCTCACTTGTGATATCAACAGTACTGATGTTTAAGAAA  1139
      ||||||||| ||||||| |||||||||||||||||| |||||
seq2  TGGGTCTCAGTTGTGATTTCAACAGTACTGATGTTT-AGAAA  1133

seq1: chr6_93221304_93222395
seq2: B6Ng01-295D23.g_70_1169 (reverse)

seq1  GCAAAAAGTGGGAAGGGGCGTGTTTA-GTACCTCTTCCCGTGTGTGA-AG  48
      |||||| || |||| ||||||||||| || ||| || ||  ||  || ||
seq2  GCAAAATGT-GGAACGGGCGTGTTTAGGTGCCT-TTACCAAGTTGGATAG  48

seq1  CAGGCAGG-GGCTTCTTATACCTTC-TCTATGTGGTATGATTTGAAGAGT  96
      ||| |||| | ||| |||||||||| ||||||||  |||||| |||||||
seq2  CAGCCAGGAGCCTTTTTATACCTTCATCTATGTGTAATGATTGGAAGAGT  98

seq1  ATTGGCATTTTGGGGGACTACCACAGTTAATCCTCAT-GATAAA-CAAAG  144
      || ||||  || |||||||||||||||| |||||||| |||||| |||||
seq2  ATGGGCA--TTAGGGGACTACCACAGTT-ATCCTCATGGATAAACCAAAG  145

seq1  CCTGAGGAGAGGACAGGGTAG-TTGGGTGGGAAAGG-AGCTGGTG-AGTC  191
      | ||| |||||||   ||||| |||||||||||||| |||||||| ||||
seq2  CTTGA-GAGAGGAACAGGTAGTTTGGGTGGGAAAGGAAGCTGGTGAAGTC  194

seq1  AACACAGG-AAGTTTCAGTGGAGGCTTG-TAATTAGAAAGAGAGA-CGCT  238
      |||||||| ||||||||||||||||||| || ||||||||||||| ||||
seq2  AACACAGGAAAGTTTCAGTGGAGGCTTGTTATTTAGAAAGAGAGACCGCT  244

seq1  GGAAAGC-AGGTGGGCTGA-CCCATAGTAGTCCCTGAATTTGGAGAGAGT  286
      ||||||| ||||||||||| |||||||||||||||||||||| |||||||
seq2  GGAAAGCAAGGTGGGCTGACCCCATAGTAGTCCCTGAATTTGAAGAGAGT  294

seq1  TAATTTAAATAGAATATGTGTTGTTTCAGAACTGAGCAATATATATTGTT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAATAGAATATGTGTTGTTTCAGAACTGAGCAATATATATTGTT  344

seq1  GCCTTCCATAGAATGAAAATTGGATGGAGTTATGGCGGGACACTCTTACT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCATAGAATGAAAATTGGATGGAGTTATGGCGGGACACTCTTACT  394

seq1  GGACACTGAAACCATCCTGCAGCAAATTGCTTCTGTGAAATCTTTCTGCT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGAAACCATCCTGCAGCAAATTGCTTCTGTGAAATCTTTCTGCT  444

seq1  GTTTGGGAGGTATGTTTTCCCTGATAACCTTCTTTGAAGATGTGATACAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGAGGTATGTTTTCCCTGATAACCTTCTTTGAAGATGTGATACAA  494

seq1  AAAAAAAAAAAAAATCAAAAAAATCCCTCCTCCCATCAATCAGATAGTAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAATCAAAAAAATCCCTCCTCCCATCAATCAGATAGTAT  544

seq1  GGGAAAGCCACGGTCACTTTGTCTTACTAGTAGCAAGCCTGATAAAGCTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGCCACGGTCACTTTGTCTTACTAGTAGCAAGCCTGATAAAGCTG  594

seq1  AAACAAAAAGAGTACGGGGGCTCTCATCAAACTGGCTGAATTCCCTGCCC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAGAGTACGGGGGCTCTCATCAAACTGGCTGAATTCCCTGCCC  644

seq1  CTGTAAAATGACCTTACAGAACTCTGGGGCAGTCTGGAGTTGCAGCTGTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAATGACCTTACAGAACTCTGGGGCAGTCTGGAGTTGCAGCTGTT  694

seq1  AGCATTCGGCCAGGGAATAAAATGTTCCTTCCTGTTCTGTATATTTTCTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCGGCCAGGGAATAAAATGTTCCTTCCTGTTCTGTATATTTTCTT  744

seq1  TACCAGATGAAAGAAAATAAATGGGTTCAAAGAAATGCACAGAAATCTGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATGAAAGAAAATAAATGGGTTCAAAGAAATGCACAGAAATCTGT  794

seq1  AAAAAAAAAAAAAACCTTAAACGTGGCATCTCCACGACTTTGCAAAATAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACCTTAAACGTGGCATCTCCACGACTTTGCAAAATAA  844

seq1  AGACTGGAGATGTATTTATGTGCACTTTCACATGCTGATTGATATGGACC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAGATGTATTTATGTGCACTTTCACATGCTGATTGATATGGACC  894

seq1  TGGGAGTCTATGGTACTGAGCTGATTTTCTGTATGCAAAATGAAGAATAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCTATGGTACTGAGCTGATTTTCTGTATGCAAAATGAAGAATAA  944

seq1  CTGTTCTGTCTAAGGGACGCTCCTGTTGATTAAACTGTAGTGAGGACTAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGTCTAAGGGACGCTCCTGTTGATTAAACTGTAGTGAGGACTAA  994

seq1  GCTGATTAAAGGCACAGGGTAAAGCACTGCTGAGCCTCTCTCACTCTTGT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTAAAGGCACAGGGTAAAGCACTGCTGAGCCTCTCTCACTCTTGT  1044

seq1  CCCAGGTATCCTTCTATAGCACAGAAACGGAAACTTCAGCCAGAAGAGAG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTATCCTTCTATAGCACAGAAACGGAAACTTCAGCCAGAAGAGAG  1094

seq1  GAATTC  1092
      ||||||
seq2  GAATTC  1100