BAC Information

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BAC

Clone NameB6Ng01-295H11
Chromosome6 (Build37)
Map Location 76,654,124 - 76,745,598
singlet/doubletdoublet
Overlap geneLOC100042956
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneCtnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295H11.bB6Ng01-295H11.g
ACCGA091322GA091323
length1,0221,155
definitionB6Ng01-295H11.b B6Ng01-295H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,744,806 - 76,745,598)(76,654,124 - 76,655,269)
sequence
gaattcatgtatcatttaaacaagaggtctaattttaattaactaaatta
attatttggttatttaattaattaggttaggcattctaatataaaaaatt
aagtagcggtctgtgaagattgctcactgtgcaaagtacatgttgtacaa
gcatgtgaacctgagtttacacacccagcaaagcaaaacaaaaaccagaa
aaactaaaaaaacacacatgcaaaaatgttcacatgccaccatttccctg
aaaagacgtttctatgggatggggaaaagtggatggaaacagactgagct
aaccagtcattctagctaaagatcagtgttagtttcattgagagattgtc
tcaaaacatgagatagaaaggtgattgaggaagatatcctgatgtcatcc
tctggtctctctactagggccctattggggcagatccagatgctgaacta
actctcagttacctcactagtactaggttttcttgtgtgctgacaggttt
cctactataccaataatggactgaacatctgaactctaagccagccccaa
ctaaatgttttactttctaagagtggctatggtcatggtgtctttgccca
gcaatagagcacttactaagacaaagtcaaatacatggtagataggcagc
tgtatcaggggaggaggccttagaaaattagtatacaagtcccaaatgtt
agagtaaaccaaagcattaatgaaagcatacttggaaaagaaatagaaat
aagtaataataataataataataataataataataataataattcagcaa
tagagcacttactaagacaaagtcaaatacatggtagataggaagccata
tcagggaggaggccttagaaaatgagtatacaagtcccaaatgttagagt
aacccaaagcattaatgaaagcatacttggaaaagaaatagaaagcaata
attaataataatttcagaaaagtggcctgactcaagttgttgcatggctg
cagtcttggttaagctattttt

gaattctttctagaaatgtcacttaatatttgggaaccttgactggaaga
agcctgaattcttcccaactctcagtgggagaacttatgcacaaaaaccc
acagttaggcactaaggagatggttcagtggttagggaaagcatgtgtag
cacaagatttagacttgagtttgcatcccaaaggcccagtggaaagctag
tgacagcaggttatgattttcatctcaacatccataaaggccaataggag
atagaagaagaagaatacctagaaattcctatgtggcaggaaacaagaaa
atctttattcaaacaaggtggaaggcgaacactgacacctgggattgttc
tctgacctctgtacatgcactgtggatcatgtgaacactatctccaacac
acacacacacacacacacacacacacacacacacacacacacaaccacag
acacttcacagagatgatacttagaagtgtttccctacagtgacctttag
taatgaacacaatggttttaagttgttaagtaccacatcactaatttatg
ttgcaaatcataaacctgttttcttaataattttaaaggttcatttttta
aattggtaactcaaggtgaggctctttttcctcaataacttctgggcttc
tcttaatctttagtttgcatagatcatattattggtgtattgtaagctac
tgctagaatgagctttttttcttcagggagagtgtaaatgaatgactaat
taaggaaaaaaagataaataccaggataaatgaatcaaataccaacaatg
ggttctaatttcatcccagaagaggacaaacatttcttaattttagacct
cattgtataaacatatgcacgtgcatgcatgtgtgtgtatacatatatgt
aattattttatattccttttggtcagacatttctctcttttcttttggtt
catctaatcttgtatcccttctaactgatgcaaaaacacagtattagcac
ctaatatcccttattctgaaatgccaaggaatctttggactccttctttt
gatcggtagcacccaaggttaccagccaatgcctctctctcattagagag
caggattcaggaatgattagttcctaacctggagctcatatcctgctgac
aaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76744806_76745598
seq2: B6Ng01-295H11.b_46_838 (reverse)

seq1  ATTATTATTATTATTATTATTATTATTATTATTATTATTACTTATTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTATTATTATTATTATTATTATTATTACTTATTTCTA  50

seq1  TTTCTTTTCCAAGTATGCTTTCATTAATGCTTTGGTTTACTCTAACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCCAAGTATGCTTTCATTAATGCTTTGGTTTACTCTAACATTT  100

seq1  GGGACTTGTATACTAATTTTCTAAGGCCTCCTCCCCTGATACAGCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGTATACTAATTTTCTAAGGCCTCCTCCCCTGATACAGCTGCCT  150

seq1  ATCTACCATGTATTTGACTTTGTCTTAGTAAGTGCTCTATTGCTGGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCATGTATTTGACTTTGTCTTAGTAAGTGCTCTATTGCTGGGCAA  200

seq1  AGACACCATGACCATAGCCACTCTTAGAAAGTAAAACATTTAGTTGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCATGACCATAGCCACTCTTAGAAAGTAAAACATTTAGTTGGGGC  250

seq1  TGGCTTAGAGTTCAGATGTTCAGTCCATTATTGGTATAGTAGGAAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGAGTTCAGATGTTCAGTCCATTATTGGTATAGTAGGAAACCTG  300

seq1  TCAGCACACAAGAAAACCTAGTACTAGTGAGGTAACTGAGAGTTAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACACAAGAAAACCTAGTACTAGTGAGGTAACTGAGAGTTAGTTCA  350

seq1  GCATCTGGATCTGCCCCAATAGGGCCCTAGTAGAGAGACCAGAGGATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGATCTGCCCCAATAGGGCCCTAGTAGAGAGACCAGAGGATGAC  400

seq1  ATCAGGATATCTTCCTCAATCACCTTTCTATCTCATGTTTTGAGACAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGATATCTTCCTCAATCACCTTTCTATCTCATGTTTTGAGACAATC  450

seq1  TCTCAATGAAACTAACACTGATCTTTAGCTAGAATGACTGGTTAGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGAAACTAACACTGATCTTTAGCTAGAATGACTGGTTAGCTCAG  500

seq1  TCTGTTTCCATCCACTTTTCCCCATCCCATAGAAACGTCTTTTCAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCATCCACTTTTCCCCATCCCATAGAAACGTCTTTTCAGGGAA  550

seq1  ATGGTGGCATGTGAACATTTTTGCATGTGTGTTTTTTTAGTTTTTCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCATGTGAACATTTTTGCATGTGTGTTTTTTTAGTTTTTCTGGT  600

seq1  TTTTGTTTTGCTTTGCTGGGTGTGTAAACTCAGGTTCACATGCTTGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGCTTTGCTGGGTGTGTAAACTCAGGTTCACATGCTTGTACA  650

seq1  ACATGTACTTTGCACAGTGAGCAATCTTCACAGACCGCTACTTAATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACTTTGCACAGTGAGCAATCTTCACAGACCGCTACTTAATTTTT  700

seq1  TATATTAGAATGCCTAACCTAATTAATTAAATAACCAAATAATTAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGAATGCCTAACCTAATTAATTAAATAACCAAATAATTAATTTA  750

seq1  GTTAATTAAAATTAGACCTCTTGTTTAAATGATACATGAATTC  793
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTAAAATTAGACCTCTTGTTTAAATGATACATGAATTC  793


seq1: chr6_76654124_76655269
seq2: B6Ng01-295H11.g_69_1223

seq1  GAATTCTTTCTAGAAATGTCACTTAATATTTGGGAACCTTGACTGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAGAAATGTCACTTAATATTTGGGAACCTTGACTGGAAGA  50

seq1  AGCCTGAATTCTTCCCAACTCTCAGTGGGAGAACTTATGCACAAAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAATTCTTCCCAACTCTCAGTGGGAGAACTTATGCACAAAAACCC  100

seq1  ACAGTTAGGCACTAAGGAGATGGTTCAGTGGTTAGGGAAAGCATGTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGGCACTAAGGAGATGGTTCAGTGGTTAGGGAAAGCATGTGTAG  150

seq1  CACAAGATTTAGACTTGAGTTTGCATCCCAAAGGCCCAGTGGAAAGCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGATTTAGACTTGAGTTTGCATCCCAAAGGCCCAGTGGAAAGCTAG  200

seq1  TGACAGCAGGTTATGATTTTCATCTCAACATCCATAAAGGCCAATAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAGGTTATGATTTTCATCTCAACATCCATAAAGGCCAATAGGAG  250

seq1  ATAGAAGAAGAAGAATACCTAGAAATTCCTATGTGGCAGGAAACAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAAGAAGAATACCTAGAAATTCCTATGTGGCAGGAAACAAGAAA  300

seq1  ATCTTTATTCAAACAAGGTGGAAGGCGAACACTGACACCTGGGATTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTCAAACAAGGTGGAAGGCGAACACTGACACCTGGGATTGTTC  350

seq1  TCTGACCTCTGTACATGCACTGTGGATCATGTGAACACTATCTCCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCTGTACATGCACTGTGGATCATGTGAACACTATCTCCAACAC  400

seq1  ACACACACACACACACACACACACACACACACACACACACACAACCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACAACCACAG  450

seq1  ACACTTCACAGAGATGATACTTAGAAGTGTTTCCCTACAGTGACCTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCACAGAGATGATACTTAGAAGTGTTTCCCTACAGTGACCTTTAG  500

seq1  TAATGAACACAATGGTTTTAAGTTGTTAAGTACCACATCACTAATTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACACAATGGTTTTAAGTTGTTAAGTACCACATCACTAATTTATG  550

seq1  TTGCAAATCATAAACCTGTTTTCTTAATAATTTTAAAGGTTCATTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATCATAAACCTGTTTTCTTAATAATTTTAAAGGTTCATTTTTTA  600

seq1  AATTGGTAACTCAAGGTGAGGCTCTTTTTCCTCAATAACTTCTGGGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTAACTCAAGGTGAGGCTCTTTTTCCTCAATAACTTCTGGGCTTC  650

seq1  TCTTAATCTTTAGTTTGCATAGATCATATTATTGGTGTATTGTAAGCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCTTTAGTTTGCATAGATCATATTATTGGTGTATTGTAAGCTAC  700

seq1  TGCTAGAATGAGCTTTTTTTCTTCAGGGAGAGTGTAAATGAATGACTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAATGAGCTTTTTTTCTTCAGGGAGAGTGTAAATGAATGACTAAT  750

seq1  TAAGGAAAAAAAGATAAATACCAGGATAAATGAATCAAATACCAACAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAAAAAGATAAATACCAGGATAAATGAATCAAATACCAACAATG  800

seq1  GGTTCTAATTTCATCCCAGAAGAGGACAAACATTTCTTAATTTTAGACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAATTTCATCCCAGAAGAGGACAAACATTTCTTAATTTTAGACCT  850

seq1  CATTGTATAAACATATGCACGTGCATGCATGTGTGTGTATACATATATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATAAACATATGCACGTGCATGCATGTGTGTGTATACATATATGT  900

seq1  AATTATTTTATATTCCTTTTGGTCAGACATTTCTCTCTTTTCTTTTGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTATATTCCTTTTGGTCAGACATTTCTCTCTTTTCTTTTGGTT  950

seq1  CATCTAATCTTGTAT-CCTTCTAACTGATGCAAAAACACAGTATTAGCAC  999
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATCTAATCTTGTATCCCTTCTAACTGATGCAAAAACACAGTATTAGCAC  1000

seq1  CTAATATCCCTTATTCTTGAAATGCCAAGGAATC-TTGGACTC--TC-TT  1045
      |||||||||||||||| ||||||||||||||||| ||||||||  || ||
seq2  CTAATATCCCTTATTC-TGAAATGCCAAGGAATCTTTGGACTCCTTCTTT  1049

seq1  TGATCGGGAGCACCCA--GGTACCAGCC-ATG---CTCTCTCAATAGAAA  1089
      ||||||| ||||||||  | |||||||| |||   |||||||| |||| |
seq2  TGATCGGTAGCACCCAAGGTTACCAGCCAATGCCTCTCTCTCATTAGAGA  1099

seq1  AACAGATTCAGGAATGATTAGTTTCCCTAAACT-GAGCTCATATTCTTTT  1138
          |||||||||||||||||||  ||||| || |||||||||| ||  |
seq2  GCAGGATTCAGGAATGATTAGTT--CCTAACCTGGAGCTCATATCCTGCT  1147

seq1  TACAAACA  1146
       |||||||
seq2  GACAAACA  1155


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