BAC Information

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BAC

Clone NameB6Ng01-296I10
Chromosome6 (Build37)
Map Location 11,874,405 - 11,940,376
singlet/doubletdoublet
Overlap genePhf14, LOC100040844
Upstream geneAA545190, Ndufa4
Downstream geneEG625347, LOC435879, Thsd7a, LOC667735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296I10.bB6Ng01-296I10.g
ACCGA092116GA092117
length1,1901,063
definitionB6Ng01-296I10.b B6Ng01-296I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,939,170 - 11,940,376)(11,874,405 - 11,875,471)
sequence
gaattctttgttcgttggagcttatgaaaattcattctcagttctttaca
agatatatgatttatcttcctgaagaacaagtatctcttcattcaatcta
cagagcctcaaatgaacctgaaacattcttaactaaaattctgaaacgta
caaagttcactttcgtgcatgtaaaataacttctaactagtacatactag
ttgaaaagtagatactattattccgttataatttcattacttgcctataa
agcactgtaggaagagcagatgtcttttgtgtgcctccttcttttttact
tggtttcctttccttaggtgctcgtaagattgctggtacattcaacttct
attgatggaataaaagtagtacatgctgttttaaagatggaagtacaaag
cagtatttcccccacttgccactaaatctaaggaagccagcacttagaga
ggtaagtctgctttatattagcaaagggaaagaaaacagagtgataatct
taactacttctattataaagctacaactgcatagtctcgttagttctcag
aaatacattaaacttcatgaaaattacactacttccacttgaaaacctta
gaacaatgaggaaagtagaggaggcttaaaaatctaacacagtatagtta
aaaacaacaaaaaaataccagtgtgcttctttgcaatattccagctatat
tggtgttccataggttaattagagaaattatcgtattggactaaactccg
taaaaaagcagatgaaattctcttttgtactctactaatctgtagtacga
tggcttctgagacagtgaacatctatcaacgtcactgcttagtaccctgg
tgagctcacatctgttcagtcaactggaacagtatcatgtatgatacatg
tgtctgtgcagattgccttcacacaaggcaattttcaatcctctgtgaag
ttacttaataaatgaaaatgtcttttatcacagaatattttaaactatag
agtacattttgtgataaaaaatataaaccagacaaaacaaatgctagatc
tgcaagtactcaaattgcttttctgatctactaggtactattattagaaa
agtatttgtcaaagccactcatctcacctttaatgatcactcttgtagta
ccagtgaacatgcaatctgtttccaaaaagatggaatggg

gaattctgagtgcttgggagactataagacaacaagacaagagtcttgga
gctcagtttcttcagaacacagaacttgcttttggactgcttcgtgctcc
tcccaggtgtagtgaataggagtgagtttatttcagcttatccatcacag
ctaactattgttatttgtttattaccaccaaggaaaagacatttttgaca
tgtgcagctttccttgcaattggactctttactcttgtgattcttaactc
ttacagtttaaattttctgatgttctgaataaagttagctattgcatgag
aacttagtctaccttctttttaggttctgttatcccaggcccctgtagag
tggtaaacagtttttccatatattttttgaaggggtctttagtgttagtt
gtcttctctatatttcccacccccattagacttttttttcactagcatct
taacttcaccttcagattcgttcattagcctattaaagccagtcctgggc
ttggctcctgtctgccttgtttctgaggcttacttacttactggagttac
acaaaatagttgtctttcttcttttctttttaacttatgttcctaacttt
gaaaaatggaatatttgtctttttgagtcctagttacctcacgcaggata
atttttgctatgtttgtccattttcttgcaaatttcatttttcttaacag
ctgaataatattccattgtgtaactataaaacattttcactattcaacca
ttagcttatggacatctataatgtttctaaattttggtgattatatagag
agcagcaatggacatgaatgagcaaatatcaacgtctgagtggtgtctta
gtcagtgtttctattcgtacacaaaacatcatgggccaagaagcaagttg
gggaggaaagggtttattcagcttacacttgcacattgctgttcatcacc
aaaggaagtcatgacaggaactcaagcagtcaggaacttggagctgaagt
ggatgcagaagccatggaggagttctgtttactgtctttctccctggctt
tcttatagatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11939170_11940376
seq2: B6Ng01-296I10.b_49_1238 (reverse)

seq1  CCCATTCCCTTCTTTTGTGAACAGATTGCATG-TCACTGGTACTACAAAG  49
      |||||||| |  |||||  ||||||||||||| ||||||||||||| |||
seq2  CCCATTCCATCTTTTTGGAAACAGATTGCATGTTCACTGGTACTAC-AAG  49

seq1  AGTGATTCATTTTAAAAGGTGAAGATGAGTTGCTTTTGGACATATTAACT  99
      ||||| |||||   ||||||| |||||||| |||||  |||| ||  |||
seq2  AGTGA-TCATT---AAAGGTG-AGATGAGTGGCTTT--GACAAAT--ACT  90

seq1  TTTTCCTATTAATAAGTACTTAGTAGATTCAGAAAAGGAAATTTGGAGTT  149
      |||  ||| |||| ||||| ||||||| ||||||||| ||  || ||| |
seq2  TTT--CTAATAAT-AGTACCTAGTAGA-TCAGAAAAGCAA--TTTGAG-T  133

seq1  ACTTGCAGATCTAGCATTTGTTTTGTCTGGGTTTATA-TTTTTATCACAA  198
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  ACTTGCAGATCTAGCATTTGTTTTGTCT-GGTTTATATTTTTTATCACAA  182

seq1  AATTGTACTCTATAGTTTAAAATATTCTGTGATAAAAGACATTTTCATTT  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TGTACTCTATAGTTTAAAATATTCTGTGATAAAAGACATTTTCATTT  231

seq1  ATTAAGTAACTTCACAGAGGATTGAAAATTGCCTTGTGTGAAGGCAATCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTAACTTCACAGAGGATTGAAAATTGCCTTGTGTGAAGGCAATCT  281

seq1  GCACAGACACATGTATCATACATGATACTGTTCCAGTTGACTGAACAGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACACATGTATCATACATGATACTGTTCCAGTTGACTGAACAGAT  331

seq1  GTGAGCTCACCAGGGTACTAAGCAGTGACGTTGATAGATGTTCACTGTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCACCAGGGTACTAAGCAGTGACGTTGATAGATGTTCACTGTCT  381

seq1  CAGAAGCCATCGTACTACAGATTAGTAGAGTACAAAAGAGAATTTCATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCATCGTACTACAGATTAGTAGAGTACAAAAGAGAATTTCATCT  431

seq1  GCTTTTTTACGGAGTTTAGTCCAATACGATAATTTCTCTAATTAACCTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTACGGAGTTTAGTCCAATACGATAATTTCTCTAATTAACCTAT  481

seq1  GGAACACCAATATAGCTGGAATATTGCAAAGAAGCACACTGGTATTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCAATATAGCTGGAATATTGCAAAGAAGCACACTGGTATTTTTT  531

seq1  TGTTGTTTTTAACTATACTGTGTTAGATTTTTAAGCCTCCTCTACTTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTTAACTATACTGTGTTAGATTTTTAAGCCTCCTCTACTTTCC  581

seq1  TCATTGTTCTAAGGTTTTCAAGTGGAAGTAGTGTAATTTTCATGAAGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTCTAAGGTTTTCAAGTGGAAGTAGTGTAATTTTCATGAAGTTT  631

seq1  AATGTATTTCTGAGAACTAACGAGACTATGCAGTTGTAGCTTTATAATAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTTCTGAGAACTAACGAGACTATGCAGTTGTAGCTTTATAATAG  681

seq1  AAGTAGTTAAGATTATCACTCTGTTTTCTTTCCCTTTGCTAATATAAAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTAAGATTATCACTCTGTTTTCTTTCCCTTTGCTAATATAAAGC  731

seq1  AGACTTACCTCTCTAAGTGCTGGCTTCCTTAGATTTAGTGGCAAGTGGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACCTCTCTAAGTGCTGGCTTCCTTAGATTTAGTGGCAAGTGGGG  781

seq1  GAAATACTGCTTTGTACTTCCATCTTTAAAACAGCATGTACTACTTTTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTGCTTTGTACTTCCATCTTTAAAACAGCATGTACTACTTTTAT  831

seq1  TCCATCAATAGAAGTTGAATGTACCAGCAATCTTACGAGCACCTAAGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAATAGAAGTTGAATGTACCAGCAATCTTACGAGCACCTAAGGAA  881

seq1  AGGAAACCAAGTAAAAAAGAAGGAGGCACACAAAAGACATCTGCTCTTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCAAGTAAAAAAGAAGGAGGCACACAAAAGACATCTGCTCTTCC  931

seq1  TACAGTGCTTTATAGGCAAGTAATGAAATTATAACGGAATAATAGTATCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCTTTATAGGCAAGTAATGAAATTATAACGGAATAATAGTATCT  981

seq1  ACTTTTCAACTAGTATGTACTAGTTAGAAGTTATTTTACATGCACGAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAACTAGTATGTACTAGTTAGAAGTTATTTTACATGCACGAAAG  1031

seq1  TGAACTTTGTACGTTTCAGAATTTTAGTTAAGAATGTTTCAGGTTCATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGTACGTTTCAGAATTTTAGTTAAGAATGTTTCAGGTTCATTT  1081

seq1  GAGGCTCTGTAGATTGAATGAAGAGATACTTGTTCTTCAGGAAGATAAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCTGTAGATTGAATGAAGAGATACTTGTTCTTCAGGAAGATAAAT  1131

seq1  CATATATCTTGTAAAGAACTGAGAATGAATTTTCATAAGCTCCAACGAAC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCTTGTAAAGAACTGAGAATGAATTTTCATAAGCTCCAACGAAC  1181

seq1  AAAGAATTC  1207
      |||||||||
seq2  AAAGAATTC  1190


seq1: chr6_11874405_11875471
seq2: B6Ng01-296I10.g_68_1130

seq1  GAATTCTGAGTGCTTGGGAGACTATAAGACAACAAGACAAGAGTCTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTGCTTGGGAGACTATAAGACAACAAGACAAGAGTCTTGGA  50

seq1  GCTCAGTTTCTTCAGAACACAGAACTTGCTTTTGGACTGCTTCGTGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTTCTTCAGAACACAGAACTTGCTTTTGGACTGCTTCGTGCTCC  100

seq1  TCCCAGGTGTAGTGAATAGGAGTGAGTTTATTTCAGCTTATCCATCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTGTAGTGAATAGGAGTGAGTTTATTTCAGCTTATCCATCACAG  150

seq1  CTAACTATTGTTATTTGTTTATTACCACCAAGGAAAAGACATTTTTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATTGTTATTTGTTTATTACCACCAAGGAAAAGACATTTTTGACA  200

seq1  TGTGCAGCTTTCCTTGCAATTGGACTCTTTACTCTTGTGATTCTTAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCTTTCCTTGCAATTGGACTCTTTACTCTTGTGATTCTTAACTC  250

seq1  TTACAGTTTAAATTTTCTGATGTTCTGAATAAAGTTAGCTATTGCATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTAAATTTTCTGATGTTCTGAATAAAGTTAGCTATTGCATGAG  300

seq1  AACTTAGTCTACCTTCTTTTTAGGTTCTGTTATCCCAGGCCCCTGTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGTCTACCTTCTTTTTAGGTTCTGTTATCCCAGGCCCCTGTAGAG  350

seq1  TGGTAAACAGTTTTTCCATATATTTTTTGAAGGGGTCTTTAGTGTTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAACAGTTTTTCCATATATTTTTTGAAGGGGTCTTTAGTGTTAGTT  400

seq1  GTCTTCTCTATATTTCCCACCCCCATTAGACTTTTTTTTCACTAGCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCTATATTTCCCACCCCCATTAGACTTTTTTTTCACTAGCATCT  450

seq1  TAACTTCACCTTCAGATTCGTTCATTAGCCTATTAAAGCCAGTCCTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCACCTTCAGATTCGTTCATTAGCCTATTAAAGCCAGTCCTGGGC  500

seq1  TTGGCTCCTGTCTGCCTTGTTTCTGAGGCTTACTTACTTACTGGAGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCCTGTCTGCCTTGTTTCTGAGGCTTACTTACTTACTGGAGTTAC  550

seq1  ACAAAATAGTTGTCTTTCTTCTTTTCTTTTTAACTTATGTTCCTAACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAGTTGTCTTTCTTCTTTTCTTTTTAACTTATGTTCCTAACTTT  600

seq1  GAAAAATGGAATATTTGTCTTTTTGAGTCCTAGTTACCTCACGCAGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGGAATATTTGTCTTTTTGAGTCCTAGTTACCTCACGCAGGATA  650

seq1  ATTTTTGCTATGTTTGTCCATTTTCTTGCAAATTTCATTTTTCTTAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTATGTTTGTCCATTTTCTTGCAAATTTCATTTTTCTTAACAG  700

seq1  CTGAATAATATTCCATTGTGTAACTATAAAACATTTTCACTATTCAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAATATTCCATTGTGTAACTATAAAACATTTTCACTATTCAACCA  750

seq1  TTAGCTTATGGACATCTATAATGTTTCTAAATTTTGGTGATTATATAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTATGGACATCTATAATGTTTCTAAATTTTGGTGATTATATAGAG  800

seq1  AGCAGCAATGGACATGAATGAGCAAATATCAACGTCTGAGTGGTGTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAATGGACATGAATGAGCAAATATCAACGTCTGAGTGGTGTCTTA  850

seq1  GTCAGTGTTTCTATTCGTACACAAAACATCAT-GGCCAAGAAGCAAGTTG  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCAGTGTTTCTATTCGTACACAAAACATCATGGGCCAAGAAGCAAGTTG  900

seq1  GGGAGGAAAGGGTTTATTCAGCTTACACTTGCACATTGCTGTTCATCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAAGGGTTTATTCAGCTTACACTTGCACATTGCTGTTCATCACC  950

seq1  AAAGGAAGTCATGACAGGAACTCAAGCAGGTCAGGAACTTGGAGGCTGAA  999
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  AAAGGAAGTCATGACAGGAACTCAAGCA-GTCAGGAACTTGGA-GCTGAA  998

seq1  GTGGATGCAGAAGCCATGGAGGAGTTCTGTTTACTGTCTTTCTTCCCCTG  1049
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  GTGGATGCAGAAGCCATGGAGGAGTTCTGTTTACTGTCTTTCT--CCCTG  1046

seq1  GCTTTCTTATAGAATCAA  1067
      |||||||||||| |||||
seq2  GCTTTCTTATAG-ATCAA  1063


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