BAC Information

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BAC

Clone NameB6Ng01-297E09
Chromosome6 (Build37)
Map Location 63,861,096 - 63,862,195
singlet/doubletsinglet
Overlap geneGrid2
Upstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099
Downstream geneAtoh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297E09.bB6Ng01-297E09.g
ACCGA092670GA092671
length6191,089
definitionB6Ng01-297E09.b B6Ng01-297E09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttatgtactcactgataagtgaatattagcccagaaact
tagaatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaacaaagaccaaagtgtggacactttgccccttcttagaactgggaa
caaaacacccatggaaggagttacagagacacaatttggagctgagatga
aaagacagaccatctatagactgccatatccggggatctatcccataatc
agccgccaaatgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacagggccccca
atggaggagctagagaaagtaaccaaggagctaaagggatctgcaaccct
ataggtggaacaacatcatgaactacccagtaccccccagagcttgtgtc
tctagctgcatatgtatcagaagatggcctagtcagccatcagtggaaag
agaagtccattggtcatataaacttgatctgactcagtacaggggaacac
cagggccaagaagtgggag

gaattcacttagaagtgtgtttcccttgaagattctaaatggttcctctt
ctgggtcttgtttatccgtttttttatgaaaagaatgtttttgttggcaa
ataagtaaagaagcatggaaaacaaacattcaaagctatcctctcttctc
ctaaccgggcttcaactgtgagagtctgagcagtaaacagacaagtgggc
tggaggacaaaggcaacaaagctgagaaccagcaggttggcaaaactctg
gcaagcaacaaaggagagccccctggggccagccaggaagggcacaggag
cagttacatttaggccgaaatagtcaaagtagcctggccttttggcagcc
agaatcccactgaattcaatgggcaaacttcagccaaagtctctctagaa
acacactttttgtctctaagacaggaggaagccagtacttttgttcctta
actcaaattatttaggggtcacagaataaggattaagagtctggaatgaa
caaaagaagcaaaaagaatattaaaatcaattggctcatcagcagaagga
tagattggctgtacaagcatgaagcagtactactgagatggtatttaaac
acaccaactgtctagagtcagtatgctcaccacttttttctgcttttgcc
cattacactgccctgttttgccattaaatggaattcgcagcctctgatca
agtgtaagctgaaataatcaaagtttaagattcagatctcttatggaaaa
aaacaaaaacaacaacaacaaaaacaatggtccaataaacttaccagcag
aaaagtgattttgatgaagaaagtttctcagagttaaaatagaaaattta
ctctttgattgtaaaagtctgtggggtagaaaatcacttatcatttattt
ccaaatcctgtgagaattaagatgggattctcgtaataaagacacattat
tgatgagctgaatgctgttctgcagtatctgctcagcacatagtcacagt
catctaacattgaagttctctgttctctgtaatgccttgggtgcataggt
gctatactgcacaatctatttcgttaaacataggttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_63861096_63862195
seq2: B6Ng01-297E09.g_68_1156

seq1  GAATTCACTTAGAAGTGTGTTTCCCTTGAAGATTCTAAATGGTTCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAGAAGTGTGTTTCCCTTGAAGATTCTAAATGGTTCCTCTT  50

seq1  CTGGGTCTTGTTTATCCGTTTTTTTATGAAAAGAATGTTTTTGTTGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTTGTTTATCCGTTTTTTTATGAAAAGAATGTTTTTGTTGGCAA  100

seq1  ATAAGTAAAGAAGCATGGAAAACAAACATTCAAAGCTATCCTCTCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAAGAAGCATGGAAAACAAACATTCAAAGCTATCCTCTCTTCTC  150

seq1  CTAACCGGGCTTCAACTGTGAGAGTCTGAGCAGTAAACAGACAAGTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCGGGCTTCAACTGTGAGAGTCTGAGCAGTAAACAGACAAGTGGGC  200

seq1  TGGAGGACAAAGGCAACAAAGCTGAGAACCAGCAGGTTGGCAAAACTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACAAAGGCAACAAAGCTGAGAACCAGCAGGTTGGCAAAACTCTG  250

seq1  GCAAGCAACAAAGGAGAGCCCCCTGGGGCCAGCCAGGAAGGGCACAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAACAAAGGAGAGCCCCCTGGGGCCAGCCAGGAAGGGCACAGGAG  300

seq1  CAGTTACATTTAGGCCGAAATAGTCAAAGTAGCCTGGCCTTTTGGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACATTTAGGCCGAAATAGTCAAAGTAGCCTGGCCTTTTGGCAGCC  350

seq1  AGAATCCCACTGAATTCAATGGGCAAACTTCAGCCAAAGTCTCTCTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCACTGAATTCAATGGGCAAACTTCAGCCAAAGTCTCTCTAGAA  400

seq1  ACACACTTTTTGTCTCTAAGACAGGAGGAAGCCAGTACTTTTGTTCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTTTTGTCTCTAAGACAGGAGGAAGCCAGTACTTTTGTTCCTTA  450

seq1  ACTCAAATTATTTAGGGGTCACAGAATAAGGATTAAGAGTCTGGAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATTATTTAGGGGTCACAGAATAAGGATTAAGAGTCTGGAATGAA  500

seq1  CAAAAGAAGCAAAAAGAATATTAAAATCAATTGGCTCATCAGCAGAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAGCAAAAAGAATATTAAAATCAATTGGCTCATCAGCAGAAGGA  550

seq1  TAGATTGGCTGTACAAGCATGAAGCAGTACTACTGAGATGGTATTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGCTGTACAAGCATGAAGCAGTACTACTGAGATGGTATTTAAAC  600

seq1  ACACCAACTGTCTAGAGTCAGTATGCTCACCACTTTTTTCTGCTTTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAACTGTCTAGAGTCAGTATGCTCACCACTTTTTTCTGCTTTTGCC  650

seq1  CATTACACTGCCCTGTTTTGCCATTAAATGGAATTCGCAGCCTCTGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACACTGCCCTGTTTTGCCATTAAATGGAATTCGCAGCCTCTGATCA  700

seq1  AGTGTAAGCTGAAATAATCAAAGTTTAAGATTCAGATCTCTTATGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAGCTGAAATAATCAAAGTTTAAGATTCAGATCTCTTATGGAAAA  750

seq1  AAACAAAAACAACAACAACAAAAACAATGGTCCAATAAACTTACCAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACAACAACAACAAAAACAATGGTCCAATAAACTTACCAGCAG  800

seq1  AAAAGTGATTTTGATGAAGAAAGTTTCTCAGAGTTAAAATAGAAAATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGATTTTGATGAAGAAAGTTTCTCAGAGTTAAAATAGAAAATTTA  850

seq1  CTCTTTGATTGTAAAAGTCTGTGGGGTAGAAAATCACTTATCATTTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGATTGTAAAAGTCTGTGGGGTAGAAAATCACTTATCATTTATTT  900

seq1  CCAAATCCTGTGAGAATTAAGATGGGATTCTCGTAATAAAAGACACATTA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCAAATCCTGTGAGAATTAAGATGGGATTCTCGTAAT-AAAGACACATTA  949

seq1  TTGATGAGCTGAATGCTGTTCTGCAAGTATCTGCTCAGCACATAGTCACA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGATGAGCTGAATGCTGTTCTGC-AGTATCTGCTCAGCACATAGTCACA  998

seq1  GTCATCTAACAATTGAGGTTCTCTGTTCTTCTGTAATGCCTTGGGTGCAT  1050
      |||||||||| ||||| ||||||||||| |||||||||||||||||||||
seq2  GTCATCTAAC-ATTGAAGTTCTCTGTTC-TCTGTAATGCCTTGGGTGCAT  1046

seq1  AAGGTGCTATAACTGCACCAATCTATTTCCGTTTAAACATAGGGTTTGTT  1100
       ||||||||| |||||| |||||||||||   |||||||||||  |||||
seq2  -AGGTGCTAT-ACTGCA-CAATCTATTTC--GTTAAACATAGG--TTGTT  1089


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