BAC Information

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BAC

Clone NameB6Ng01-297L24
Chromosome6 (Build37)
Map Location 121,038,347 - 121,230,070
singlet/doubletdoublet
Overlap geneMinpp1-ps, Pex26, Tuba8, Usp18
Upstream geneNinj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793
Downstream geneSlc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297L24.bB6Ng01-297L24.g
ACCGA093034GA093035
length1,1691,131
definitionB6Ng01-297L24.b B6Ng01-297L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,228,896 - 121,230,070)(121,038,347 - 121,039,460)
sequence
gaattcatcagattcaacggattcatcagaaggtatggggctgtagagcc
tctgtgggtggaaatgttttagtagatctgttttttgaaaaaataaatga
aggaaatatatgttctcacttttttctaaagatgtaactgactacctact
tttctgtagattatttttctagactaatatgtgtgcaacaataatgaatg
agaaaaaaaaaagaggccatgagtttgaaagagaagaaggaggaatatat
tggaggaaatgatgtaattacgttataatctcaaaaataaaagaaatcat
ttttagaagggttgaattgtcttcagttcttaactcacaagtacttcaat
attttacaaagggcaaagttatatattgtattttttcttctataaaaata
actggatgaagttctttataaagtgacaatttccatacagtttgtcaaaa
taaagccctaattggatgattagttacctcatgatttctacagaaaccct
aagccattcatattcattgaccataagtcattggccctaacccattcact
cactcaccctaacccattcactcactcattgatcttaagtcattccttca
ttgaccctaagccattcattcactgagatgaaaactcaagacacacaagc
agcagcaacagtttcaaaccacccccaaagtgaaaatactcaaaacctcc
cctaatattaaggaaggaaccaagagcatccaccatgaccaagacagctt
catcccagggatacagggtagtgcaatacatgcagatcagtaaatgcaat
ctaccacatggactcaagggccgagatcacataatttatctcattagatg
cagaaagagcctttaacaacatccaaaatttatccataataatcccaaaa
tttatccaaattgagaacacattttattattccattttcctacaaccacc
tgaattttgaaaaaaagatcaaaataagtattggggaaagaaaaacagca
cattcagtatgctgatccaacttaattatacacagaagagtttaacgaga
tctatgtctcccccttgcatggacctcaacttcaatggatcgagatccca
ccatttacctgattctgatctatgcttcattacagaacatttctgaaccg
atgcgtcttaaacaggcat
gaattcctgctctctggaggcagaggcagttcaaggacagcctagtatca
agaccttgtctcactaagtatgggagcatacctgtaaaatcgtatgacgt
gggaggaagaggcaggtcaggaggattaggactttaaagtcatgctctac
attgcaagttcgaaaggtcacctggactacacatgacctttgtctcaaaa
agatttaaaaaaaaaaaaagactagacaaaggcacagctcactgagaggg
agaagactgtagccacggtctactgaaagccttgtctctagagaactcct
aattaagtgagtctagacacaggcagtcaccagattcccgcacctatgcc
gagacacaagatggacacacagaggtgggccgaggggccacccctccagt
ctcacccccaccctgggtgggatagttaaagtggagaggtgatcctgagc
cttttcaaaggatcaaacccagagggccttctcccaaaggtgtaactgtc
accagagaagtctgaggattcagaatccctcctccctttggggcaaggct
caggtaagcggtgtggcttcccagatccggacaaagaatagctttcccat
tcctaagctccaggtgagtaaacgcggtcaaggcaggtggagtgcagggt
gtgcgagcagccatgctactctgagcacgcacctccgcaaggatgctgag
acagacatgcttctcatatggctacaaaaaataaagtcacacgcatggac
acccacagagaggggcctaacaggacggtgcccaacaaaccagaaacatc
tgcaggtgtgttgctgtcaatcatactgtgtcaccaccggccggcactgc
cacaggagcagaggcccttcagtggagagggctgtgtccatgttaaatgc
ttcttgtctgcttttttaacagtagggcagccagttgtttcgagggcatc
tacttccatgagaagcacatctcgtaagcctctttcttttggggcactga
cctgtgggaagccacatgtgcccattgcagaattggcactgaactactgc
tggcaacccacgcataagcttggacaaaaccacccaaggtgatcaataat
gcattaaaggtttttgcaaagaacactgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121228896_121230070
seq2: B6Ng01-297L24.b_48_1216 (reverse)

seq1  ATGCCTGTGTTAGCAGCATCTGGTTCAGAAAATGTCTGTAAATGGAAGCA  50
      |||||||| | ||  ||||| ||||||||||   |||||||   ||||||
seq2  ATGCCTGTTTAAGACGCATC-GGTTCAGAAATGTTCTGTAA--TGAAGCA  47

seq1  TAGATTCAGGGTATCAGGGTTCATGTTGGGATTCTCGATCCATTTGGAGT  100
      |||| |||  | |||| |||  ||| ||||| |||||||||| ||| |||
seq2  TAGA-TCA--GAATCA-GGTAAATGGTGGGA-TCTCGATCCA-TTGAAGT  91

seq1  TGAGGTCCATGC-AGGGGGAGACATAGATCTCGTTAAACTCTTCTGTGTA  149
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCATGCAAGGGGGAGACATAGATCTCGTTAAACTCTTCTGTGTA  141

seq1  TAATTAAGTTGGATCAGCATTACTGAATGTGCTG-TTTTCTTTCCCCAAT  198
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  TAATTAAGTTGGATCAGCA-TACTGAATGTGCTGTTTTTCTTTCCCCAAT  190

seq1  ACTTATTTTTGATCTTTTTGTCAAAATTCAGGTGGTTGTAGGAAAATGGA  248
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTTA-TTTTGATCTTTTTTTCAAAATTCAGGTGGTTGTAGGAAAATGGA  239

seq1  ATAAT-AAATGTGTTCTCAATTTGGATAAATTTT-GGATTATTATGGATA  296
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAATAAAATGTGTTCTCAATTTGGATAAATTTTGGGATTATTATGGATA  289

seq1  AATTTTGGATGTTGTTAAAGGCTCTTTCTGCATCTAATGAGAT-AATTAT  345
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTTTGGATGTTGTTAAAGGCTCTTTCTGCATCTAATGAGATAAATTAT  339

seq1  GTGATCTCGGCCCTTGAGTCCATGTGGTAGATTGCATTTACTGATCTGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTCGGCCCTTGAGTCCATGTGGTAGATTGCATTTACTGATCTGCA  389

seq1  TGTATTGCACTACCCTGTATCCCTGGGATGAAGCTGTCTTGGTCATGGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGCACTACCCTGTATCCCTGGGATGAAGCTGTCTTGGTCATGGTG  439

seq1  GATGCTCTTGGTTCCTTCCTTAATATTAGGGGAGGTTTTGAGTATTTTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTTGGTTCCTTCCTTAATATTAGGGGAGGTTTTGAGTATTTTCA  489

seq1  CTTTGGGGGTGGTTTGAAACTGTTGCTGCTGCTTGTGTGTCTTGAGTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGGTGGTTTGAAACTGTTGCTGCTGCTTGTGTGTCTTGAGTTTT  539

seq1  CATCTCAGTGAATGAATGGCTTAGGGTCAATGAAGGAATGACTTAAGATC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGTGAATGAATGGCTTAGGGTCAATGAAGGAATGACTTAAGATC  589

seq1  AATGAGTGAGTGAATGGGTTAGGGTGAGTGAGTGAATGGGTTAGGGCCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGAGTGAATGGGTTAGGGTGAGTGAGTGAATGGGTTAGGGCCAA  639

seq1  TGACTTATGGTCAATGAATATGAATGGCTTAGGGTTTCTGTAGAAATCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATGGTCAATGAATATGAATGGCTTAGGGTTTCTGTAGAAATCAT  689

seq1  GAGGTAACTAATCATCCAATTAGGGCTTTATTTTGACAAACTGTATGGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACTAATCATCCAATTAGGGCTTTATTTTGACAAACTGTATGGAA  739

seq1  ATTGTCACTTTATAAAGAACTTCATCCAGTTATTTTTATAGAAGAAAAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACTTTATAAAGAACTTCATCCAGTTATTTTTATAGAAGAAAAAA  789

seq1  TACAATATATAACTTTGCCCTTTGTAAAATATTGAAGTACTTGTGAGTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATATAACTTTGCCCTTTGTAAAATATTGAAGTACTTGTGAGTTA  839

seq1  AGAACTGAAGACAATTCAACCCTTCTAAAAATGATTTCTTTTATTTTTGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAAGACAATTCAACCCTTCTAAAAATGATTTCTTTTATTTTTGA  889

seq1  GATTATAACGTAATTACATCATTTCCTCCAATATATTCCTCCTTCTTCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAACGTAATTACATCATTTCCTCCAATATATTCCTCCTTCTTCTC  939

seq1  TTTCAAACTCATGGCCTCTTTTTTTTTTCTCATTCATTATTGTTGCACAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTCATGGCCTCTTTTTTTTTTCTCATTCATTATTGTTGCACAC  989

seq1  ATATTAGTCTAGAAAAATAATCTACAGAAAAGTAGGTAGTCAGTTACATC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTCTAGAAAAATAATCTACAGAAAAGTAGGTAGTCAGTTACATC  1039

seq1  TTTAGAAAAAAGTGAGAACATATATTTCCTTCATTTATTTTTTCAAAAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAAAGTGAGAACATATATTTCCTTCATTTATTTTTTCAAAAAA  1089

seq1  CAGATCTACTAAAACATTTCCACCCACAGAGGCTCTACAGCCCCATACCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTACTAAAACATTTCCACCCACAGAGGCTCTACAGCCCCATACCT  1139

seq1  TCTGATGAATCCGTTGAATCTGATGAATTC  1175
      ||||||||||||||||||||||||||||||
seq2  TCTGATGAATCCGTTGAATCTGATGAATTC  1169

seq1: chr6_121038347_121039460
seq2: B6Ng01-297L24.g_67_1197

seq1  GAATTCCTGCTCTCTGGAGGCAGAGGCAGTTCAAGGACAGCCTAGTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCTCTGGAGGCAGAGGCAGTTCAAGGACAGCCTAGTATCA  50

seq1  AGACCTTGTCTCACTAAGTATGGGAGCATACCTGTAAAATCGTATGACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGTCTCACTAAGTATGGGAGCATACCTGTAAAATCGTATGACGT  100

seq1  GGGAGGAAGAGGCAGGTCAGGAGGATTAGGACTTTAAAGTCATGCTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAGAGGCAGGTCAGGAGGATTAGGACTTTAAAGTCATGCTCTAC  150

seq1  ATTGCAAGTTCGAAAGGTCACCTGGACTACACATGACCTTTGTCTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGTTCGAAAGGTCACCTGGACTACACATGACCTTTGTCTCAAAA  200

seq1  AGATTTAAAAAAAAAAAAAGACTAGACAAAGGCACAGCTCACTGAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAAAAAAAAAAAAGACTAGACAAAGGCACAGCTCACTGAGAGGG  250

seq1  AGAAGACTGTAGCCACGGTCTACTGAAAGCCTTGTCTCTAGAGAACTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTGTAGCCACGGTCTACTGAAAGCCTTGTCTCTAGAGAACTCCT  300

seq1  AATTAAGTGAGTCTAGACACAGGCAGTCACCAGATTCCCGCACCTATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTGAGTCTAGACACAGGCAGTCACCAGATTCCCGCACCTATGCC  350

seq1  GAGACACAAGATGGACACACAGAGGTGGGCCGAGGGGCCACCCCTCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAAGATGGACACACAGAGGTGGGCCGAGGGGCCACCCCTCCAGT  400

seq1  CTCACCCCCACCCTGGGTGGGATAGTTAAAGTGGAGAGGTGATCCTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCCACCCTGGGTGGGATAGTTAAAGTGGAGAGGTGATCCTGAGC  450

seq1  CTTTTCAAAGGATCAAACCCAGAGGGCCTTCTCCCAAAGGTGTAACTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAGGATCAAACCCAGAGGGCCTTCTCCCAAAGGTGTAACTGTC  500

seq1  ACCAGAGAAGTCTGAGGATTCAGAATCCCTCCTCCCTTTGGGGCAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAAGTCTGAGGATTCAGAATCCCTCCTCCCTTTGGGGCAAGGCT  550

seq1  CAGGTAAGCGGTGTGGCTTCCCAGATCCGGACAAAGAATAGCTTTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGCGGTGTGGCTTCCCAGATCCGGACAAAGAATAGCTTTCCCAT  600

seq1  TCCTAAGCTCCAGGTGAGTAAACGCGGTCAAGGCAGGTGGAGTGCAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCTCCAGGTGAGTAAACGCGGTCAAGGCAGGTGGAGTGCAGGGT  650

seq1  GTGCGAGCAGCCATGCTACTCTGAGCACGCACCTCCGCAAGGATGCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAGCAGCCATGCTACTCTGAGCACGCACCTCCGCAAGGATGCTGAG  700

seq1  ACAGACATGCTTCTCATATGGCTACAAAAAATAAAGTCACACGCATGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATGCTTCTCATATGGCTACAAAAAATAAAGTCACACGCATGGAC  750

seq1  ACCCACAGAGAGGGGCCTAACAGGACGGTGCCCAACAAACCAGAAACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGAGAGGGGCCTAACAGGACGGTGCCCAACAAACCAGAAACATC  800

seq1  TGCAGGTGTGTTGCTGTC-ATCATACTGTGTCACCACCGGCCGGCACTGC  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCAGGTGTGTTGCTGTCAATCATACTGTGTCACCACCGGCCGGCACTGC  850

seq1  CACAGGAGCAGAGGCCCTTCAGTGGAGAGGGCTGTGTCCATGTT-AATGC  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACAGGAGCAGAGGCCCTTCAGTGGAGAGGGCTGTGTCCATGTTAAATGC  900

seq1  T--CTGTCTGC-TTTTTAACAGTAGGGCAGCCAG-TGTTTCGAGGGCATC  944
      |   ||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TTCTTGTCTGCTTTTTTAACAGTAGGGCAGCCAGTTGTTTCGAGGGCATC  950

seq1  TAC-TCCATGAGAAGCACCAGCTCGTAAG-CTCTT--CTTTGGGGCACTG  990
      ||| ||||||||||||| || |||||||| |||||   ||||||||||||
seq2  TACTTCCATGAGAAGCA-CATCTCGTAAGCCTCTTTCTTTTGGGGCACTG  999

seq1  ACTTGTGGGAAGCCACATGTG-CCATTGCAG-AGTGGCACTG-ACTACTG  1037
      || |||||||||||||||||| ||||||||| | |||||||| |||||||
seq2  ACCTGTGGGAAGCCACATGTGCCCATTGCAGAATTGGCACTGAACTACTG  1049

seq1  CTGGCCA-CCACGCATAAGTTTGGACAAA--CAACCAATGTG-TACATAA  1083
      ||||| | ||||||||||| |||||||||  || |||| ||| |  ||||
seq2  CTGGCAACCCACGCATAAGCTTGGACAAAACCACCCAAGGTGATCAATAA  1099

seq1  TGCAGTAAAGTTTTTTGCAAAG-ACACTGCCT  1114
      |||| ||||| ||||||||||| |||||||||
seq2  TGCATTAAAGGTTTTTGCAAAGAACACTGCCT  1131