BAC Information

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BAC

Clone NameB6Ng01-297N09
Chromosome6 (Build37)
Map Location 43,113,360 - 43,224,301
singlet/doubletdoublet
Overlap geneOlfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5
Upstream geneTas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438
Downstream geneNobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297N09.bB6Ng01-297N09.g
ACCGA093098GA093099
length7261,055
definitionB6Ng01-297N09.b B6Ng01-297N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,113,360 - 43,114,085)(43,223,267 - 43,224,301)
sequence
gaattctacacatgttttagaggtatggttctcttctctatggtgttcct
tctaactcaaagtatcttcttcaaaatatccagtactaacatctcttctt
actaaagagattcgtttgaactggaaagtggcttttggtgtgggtagctg
aaacacaacagtagaaacacggcattagaaatcaccacagcagtgtcaaa
aggctgtcattcctgggtgaggccctgactcagagtgcattgcaagaaat
tagaaaaacatggctcaccttattgtcttgctgtgctgtacacaggggtc
ccccatactcactggcatccctcaccctctgtcatctactgtgatgtgac
catagcgaacagagcatcacaactgtcttaaagagaggaggcctaagaat
gaagcacctccagaacctgaaatagtcaaagacgaccttatttttaatgg
attaaatgaagatattaatgtccagaaaacctatttcaaagaattgagta
cctgttgtactcatttgttttctgaatcagtttgctaaatgaatttgtca
tgtaattacttaattttcaaatatttctacttaacatactattgtgataa
ctactagacttgaagtagaatcattttctggcataaagagagatggagag
tcagacacacacagaaagagagagagagagagagagagagagagagagag
agagagagagagagggagagagaggg
gaattcttcagagtcctgtttcaaagcaaacaaagcagtagaggagtctg
aaaagacgataccatccctacttcttctgtttcttcttggggtcagagag
ccatagatggctggtttaggaggcctctgaggtaattccaaatgagagaa
agagagtgacattcccagagagtctggagtctgctctgtcctgtgagagc
ctgggaacgagttgcttcttagatgttgggtaactccagtgtagctgcta
agagggctgtgagggttggctgtgtcagaggtggcacatgggtacctgga
ggattttgcgggtagtggaggagtctcacatggcccacaatgatgtggag
tgtcagctgaggcagaggctgttggggtctcctcaggaaggataactgaa
gagctaacaggtgacaaggtggcagtgctggagaaaacattaggaggact
gaaaggaggtgaatctcgtgtccctgaaggagccacagatgtactagcag
agacaacctcaatccccttccttagcctgaattcttcttgctggctgttg
tgagtcctattatcaagagattcttcaggagcaaaagaggcagggggaga
aatgggttggtgagaccattctgttggctccagtgcaggagcttgagggc
tcagttcctcacacacaggctccttctgaatctgtggaatatcagccaca
gaggaagaaatacctgggaacaatgtacctggggagagaacctcaggatc
tacggaagccactggaagagaaggcttgctgtcctctcctggtctgcttc
ccttccactgctgtctgcccaccactatccccattcccttggaccctgtc
accttgagtctacaacctcccttctggtccctttacggggcatcactttt
tcctgttggatcatgatcctcctgctttctctttaacaattctctgattt
tctcttactaaccttttgattctcctgtatacttgaggtggctacccttc
tctctcttccactcccctggatttcctggtcctgtcccttccctctttct
gaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_43113360_43114085
seq2: B6Ng01-297N09.b_45_770

seq1  GAATTCTACACATGTTTTAGAGGTATGGTTCTCTTCTCTATGGTGTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACATGTTTTAGAGGTATGGTTCTCTTCTCTATGGTGTTCCT  50

seq1  TCTAACTCAAAGTATCTTCTTCAAAATATCCAGTACTAACATCTCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCAAAGTATCTTCTTCAAAATATCCAGTACTAACATCTCTTCTT  100

seq1  ACTAAAGAGATTCGTTTGAACTGGAAAGTGGCTTTTGGTGTGGGTAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAGATTCGTTTGAACTGGAAAGTGGCTTTTGGTGTGGGTAGCTG  150

seq1  AAACACAACAGTAGAAACACGGCATTAGAAATCACCACAGCAGTGTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAACAGTAGAAACACGGCATTAGAAATCACCACAGCAGTGTCAAA  200

seq1  AGGCTGTCATTCCTGGGTGAGGCCCTGACTCAGAGTGCATTGCAAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCATTCCTGGGTGAGGCCCTGACTCAGAGTGCATTGCAAGAAAT  250

seq1  TAGAAAAACATGGCTCACCTTATTGTCTTGCTGTGCTGTACACAGGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAACATGGCTCACCTTATTGTCTTGCTGTGCTGTACACAGGGGTC  300

seq1  CCCCATACTCACTGGCATCCCTCACCCTCTGTCATCTACTGTGATGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATACTCACTGGCATCCCTCACCCTCTGTCATCTACTGTGATGTGAC  350

seq1  CATAGCGAACAGAGCATCACAACTGTCTTAAAGAGAGGAGGCCTAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCGAACAGAGCATCACAACTGTCTTAAAGAGAGGAGGCCTAAGAAT  400

seq1  GAAGCACCTCCAGAACCTGAAATAGTCAAAGACGACCTTATTTTTAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACCTCCAGAACCTGAAATAGTCAAAGACGACCTTATTTTTAATGG  450

seq1  ATTAAATGAAGATATTAATGTCCAGAAAACCTATTTCAAAGAATTGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGAAGATATTAATGTCCAGAAAACCTATTTCAAAGAATTGAGTA  500

seq1  CCTGTTGTACTCATTTGTTTTCTGAATCAGTTTGCTAAATGAATTTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTACTCATTTGTTTTCTGAATCAGTTTGCTAAATGAATTTGTCA  550

seq1  TGTAATTACTTAATTTTCAAATATTTCTACTTAACATACTATTGTGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTACTTAATTTTCAAATATTTCTACTTAACATACTATTGTGATAA  600

seq1  CTACTAGACTTGAAGTAGAATCATTTTCTGGCATAAAGAGAGATGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGACTTGAAGTAGAATCATTTTCTGGCATAAAGAGAGATGGAGAG  650

seq1  TCAGACACACACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACACACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  700

seq1  AGAGAGAGAGAGAGGGAGAGAGAGGG  726
      ||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGGGAGAGAGAGGG  726

seq1: chr6_43223267_43224301
seq2: B6Ng01-297N09.g_72_1126 (reverse)

seq1  GATTCAG-AAGAGG--AGGGACAGGACCAGG-AATCCAGGGAGGTGGA--  44
      ||||||| ||||||  ||||||||||||||| |||||||||  |||||  
seq2  GATTCAGAAAGAGGGAAGGGACAGGACCAGGAAATCCAGGGGAGTGGAAG  50

seq1  AGAGAGAAGGGTAGCCA-CTC-AGTATACA-GAGAATC-AAAGGTTAGT-  89
      ||||||||||||||||| ||| |||||||| ||||||| |||||||||| 
seq2  AGAGAGAAGGGTAGCCACCTCAAGTATACAGGAGAATCAAAAGGTTAGTA  100

seq1  AGAG-AAATCAGAG-ATTG-TAAAGAGAAAGCAGAGAGATCATGATCAAA  136
      |||| ||||||||| |||| ||||||||||||||   |||||||||| ||
seq2  AGAGAAAATCAGAGAATTGTTAAAGAGAAAGCAGGAGGATCATGATCCAA  150

seq1  CAGG-AAAAGTGATG-CCCGT-AAGGGACCAGAA-GGAGGTTGTAGACTC  182
      |||| |||||||||| ||||| |||||||||||| |||||||||||||||
seq2  CAGGAAAAAGTGATGCCCCGTAAAGGGACCAGAAGGGAGGTTGTAGACTC  200

seq1  -AGGTGACAGGGTCCAAGGGAATGGGGATAGTGGTGGGCAGACAGCAGTG  231
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACAGGGTCCAAGGGAATGGGGATAGTGGTGGGCAGACAGCAGTG  250

seq1  GAAGGG-AGCAGACCAGGAGAGGACAGCAAGCCTTCTCTTCCAGTGGCTT  280
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGCAGACCAGGAGAGGACAGCAAGCCTTCTCTTCCAGTGGCTT  300

seq1  CCGTAGATCCTGAGGTTCTCTCCCCAGGTACATTGTTCCCAGGTATTTCT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGATCCTGAGGTTCTCTCCCCAGGTACATTGTTCCCAGGTATTTCT  350

seq1  TCCTCTGTGGCTGATATTCCACAGATTCAGAAGGAGCCTGTGTGTGAGGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTGGCTGATATTCCACAGATTCAGAAGGAGCCTGTGTGTGAGGA  400

seq1  ACTGAGCCCTCAAGCTCCTGCACTGGAGCCAACAGAATGGTCTCACCAAC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCCTCAAGCTCCTGCACTGGAGCCAACAGAATGGTCTCACCAAC  450

seq1  CCATTTCTCCCCCTGCCTCTTTTGCTCCTGAAGAATCTCTTGATAATAGG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCCCCCTGCCTCTTTTGCTCCTGAAGAATCTCTTGATAATAGG  500

seq1  ACTCACAACAGCCAGCAAGAAGAATTCAGGCTAAGGAAGGGGATTGAGGT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAACAGCCAGCAAGAAGAATTCAGGCTAAGGAAGGGGATTGAGGT  550

seq1  TGTCTCTGCTAGTACATCTGTGGCTCCTTCAGGGACACGAGATTCACCTC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGCTAGTACATCTGTGGCTCCTTCAGGGACACGAGATTCACCTC  600

seq1  CTTTCAGTCCTCCTAATGTTTTCTCCAGCACTGCCACCTTGTCACCTGTT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTCCTCCTAATGTTTTCTCCAGCACTGCCACCTTGTCACCTGTT  650

seq1  AGCTCTTCAGTTATCCTTCCTGAGGAGACCCCAACAGCCTCTGCCTCAGC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCAGTTATCCTTCCTGAGGAGACCCCAACAGCCTCTGCCTCAGC  700

seq1  TGACACTCCACATCATTGTGGGCCATGTGAGACTCCTCCACTACCCGCAA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCCACATCATTGTGGGCCATGTGAGACTCCTCCACTACCCGCAA  750

seq1  AATCCTCCAGGTACCCATGTGCCACCTCTGACACAGCCAACCCTCACAGC  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCAGGTACCCATGTGCCACCTCTGACACAGCCAACCCTCACAGC  800

seq1  CCTCTTAGCAGCTACACTGGAGTTACCCAACATCTAAGAAGCAACTCGTT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGCAGCTACACTGGAGTTACCCAACATCTAAGAAGCAACTCGTT  850

seq1  CCCAGGCTCTCACAGGACAGAGCAGACTCCAGACTCTCTGGGAATGTCAC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCTCACAGGACAGAGCAGACTCCAGACTCTCTGGGAATGTCAC  900

seq1  TCTCTTTCTCTCATTTGGAATTACCTCAGAGGCCTCCTAAACCAGCCATC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTCATTTGGAATTACCTCAGAGGCCTCCTAAACCAGCCATC  950

seq1  TATGGCTCTCTGACCCCAAGAAGAAACAGAAGAAGTAGGGATGGTATCGT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCTCTGACCCCAAGAAGAAACAGAAGAAGTAGGGATGGTATCGT  1000

seq1  CTTTTCAGACTCCTCTACTGCTTTGTTTGCTTTGAAACAGGACTCTGAAG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGACTCCTCTACTGCTTTGTTTGCTTTGAAACAGGACTCTGAAG  1050

seq1  AATTC  1035
      |||||
seq2  AATTC  1055