BAC Information

Click to search

BAC

Clone NameB6Ng01-299D01
Chromosome6 (Build37)
Map Location 15,775,776 - 15,893,905
singlet/doubletdoublet
Overlap genenone
Upstream geneFoxp2, LOC100040568, Mdfic
Downstream geneLOC100041116, Tcfec, EG435881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299D01.bB6Ng01-299D01.g
ACCGA094100GA094101
length1,1241,136
definitionB6Ng01-299D01.b B6Ng01-299D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,892,788 - 15,893,905)(15,775,776 - 15,776,906)
sequence
gaattctctaaaaaaaaaaaaaagacattataaaatatactaaatgatgc
attcaagattcccttaccctctctggaacatgtctgagtttgacaaactg
tttgaaattatcaattcaatgatgcccttaacaggggttagctttagtgt
atatttaaaatacattcaagacacaagtcttttctgctacaagaactaca
ggaagctccatttaacatcagcaagatgactgaagtggcttaaattattc
tccatatgcacctcacatttccacaacttcagggtatttttaaacattct
tgctacatgatgtacaatttgcttagtacgtggcattcataggtctagcc
atacaataacttgttgtaatttaagcaaacatgttttaaataaaaggtag
ctaaagtctgtaatctctgatgtatcacatgtagtgaaagcttccataaa
aatggatttcccaggcagccaaagatcatagtttccccttaagaaatatc
ataatttatgttttcccctcatgtattttagtatatctttactgactagt
ttcaccaatgatgtgatatccttgaaaaattagactaaaaatagagagaa
agaaggaaaaaaacttactttcttcctatatttttaatttccaaatatta
gcaattaatgtaatggccaggacttgcatagtcaattaaagaaaaataaa
ttttgtaagttgattgatatgcagtttattgtgtatgtttaaggggaaac
ttttgataagtttagatgaaaagtgagtagtaaaactatcatcaaaaaca
agaaaatgaaaatattaccattccaaatttttccttgcactacttgcaaa
ttaatctctaccagttctccgcatagtaaatgttctctccttacgtgtaa
aaatggaggaaaacatgatccacaaaggtttgtattaagaatgcaataac
ctgccctgagagagtactggctttcctcccatatatctagaattgtacat
aaatgcatcatggagctcacaagaacttcttttttatccatctctttatt
ctcatgcagtttactggtggaaagtcaccaccaatatttcacttctggtc
atgtgatactcaatttttatccag

gaattctaatgaagttttgcatatatagaattacatgctatattacctat
atatttttctaagctgatcaagttttgaggatctgttcatgttgcaattg
aataattaggatttcttcaggaaatagtaaatattggtgaaagaaaaatg
agaaaatgttttaaactaaggctcagattgctttataagtagaaagagag
tgatattctcaccatataaaattatggaaaaatgaagggcacagatacat
gacaggtatctggcacataaattattgatgaataggatttcctatgtaca
agaagcagtagagttaattatatgttgatattatgttatgttgagttata
tccttgaatgttttcattcttatgtctgatttttaacctctttgacatct
taaagtcaataaactgctgggtgatagacgttagatatgtcaagtattga
gcagtactcccaccctacttcaacactcctggtgtcctctttttctagtt
aatcttctggaagaataaggaataaaaatgatcacttcttcaaacccctt
caatgcctgggagaaagcgcatcaactcagtaatttcttgaatttataaa
tgagcaaaaaaaaaaaaaactgtgaagtgatacttttaactattagatgc
tctttggatttttttttttttgagttcttaccaatggagactcaagcgtt
tcagaaccacattagtcaactctgagctacttcacatataacagtttgaa
gttacttaaaagctaagtataatcagtacttcattttctatactacaata
gacacaaatacagtatatgttcctaaacattataagtatctagttgccag
aatatgagactttcacatcattgaaaattgtaacattgatatatatatca
tcatcatcattcattcaagtaccacttgagggatgcacccaataaccact
ttagccagagaccagattccacttagggaaattttagaaaataaacgaag
agtatcaagagttagatattatatcagcagtgttgagttcagttaagtga
ctggagttccaaacctaaactagtcttaaactagtttccacggggcctga
acgttgcctaaggtcgttaacgcaattgtcactgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15892788_15893905
seq2: B6Ng01-299D01.b_44_1167 (reverse)

seq1  CTGGAT-AAAATGAAGTATCACATGA-CAG-AGTGAAATATTGGT-GTGA  46
      |||||| |||||  |||||||||||| ||| |||||||||||||| ||||
seq2  CTGGATAAAAATTGAGTATCACATGACCAGAAGTGAAATATTGGTGGTGA  50

seq1  CTTTC--ACAGT-AACTGCATGAGAATAAAGGAGATGGAT-AAAAAGAAG  92
      |||||   |||| ||||||||||||||||| ||||||||| |||||||||
seq2  CTTTCCACCAGTAAACTGCATGAGAATAAA-GAGATGGATAAAAAAGAAG  99

seq1  T--CTGTGAGCTCCATGATTGCATTTATGTACAATTCTAGATATATGGGA  140
      |   |||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTTGTGAGCTCCATGA-TGCATTTATGTACAATTCTAGATATATGGGA  148

seq1  GGAAAGCCAGTACTCTCTCAGGGCAGGTTATTTGCATTTCTTAATACAAA  190
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GGAAAGCCAGTACTCTCTCAGGGCAGGTTA-TTGCA-TTCTTAATACAAA  196

seq1  CCTTTGTGGATCATGTTTTCCTCCATTTTTACACGTAAGGAGAGAACATT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGGATCATGTTTTCCTCCATTTTTACACGTAAGGAGAGAACATT  246

seq1  TACTATGCGGAGAACTGGTAGAGATTAATTTGCAAGTAGTGCAAGGAAAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGCGGAGAACTGGTAGAGATTAATTTGCAAGTAGTGCAAGGAAAA  296

seq1  ATTTGGAATGGTAATATTTTCATTTTCTTGTTTTTGATGATAGTTTTACT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAATGGTAATATTTTCATTTTCTTGTTTTTGATGATAGTTTTACT  346

seq1  ACTCACTTTTCATCTAAACTTATCAAAAGTTTCCCCTTAAACATACACAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTTCATCTAAACTTATCAAAAGTTTCCCCTTAAACATACACAA  396

seq1  TAAACTGCATATCAATCAACTTACAAAATTTATTTTTCTTTAATTGACTA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCATATCAATCAACTTACAAAATTTATTTTTCTTTAATTGACTA  446

seq1  TGCAAGTCCTGGCCATTACATTAATTGCTAATATTTGGAAATTAAAAATA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCCTGGCCATTACATTAATTGCTAATATTTGGAAATTAAAAATA  496

seq1  TAGGAAGAAAGTAAGTTTTTTTCCTTCTTTCTCTCTATTTTTAGTCTAAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAAAGTAAGTTTTTTTCCTTCTTTCTCTCTATTTTTAGTCTAAT  546

seq1  TTTTCAAGGATATCACATCATTGGTGAAACTAGTCAGTAAAGATATACTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGGATATCACATCATTGGTGAAACTAGTCAGTAAAGATATACTA  596

seq1  AAATACATGAGGGGAAAACATAAATTATGATATTTCTTAAGGGGAAACTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATGAGGGGAAAACATAAATTATGATATTTCTTAAGGGGAAACTA  646

seq1  TGATCTTTGGCTGCCTGGGAAATCCATTTTTATGGAAGCTTTCACTACAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTGGCTGCCTGGGAAATCCATTTTTATGGAAGCTTTCACTACAT  696

seq1  GTGATACATCAGAGATTACAGACTTTAGCTACCTTTTATTTAAAACATGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACATCAGAGATTACAGACTTTAGCTACCTTTTATTTAAAACATGT  746

seq1  TTGCTTAAATTACAACAAGTTATTGTATGGCTAGACCTATGAATGCCACG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAAATTACAACAAGTTATTGTATGGCTAGACCTATGAATGCCACG  796

seq1  TACTAAGCAAATTGTACATCATGTAGCAAGAATGTTTAAAAATACCCTGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGCAAATTGTACATCATGTAGCAAGAATGTTTAAAAATACCCTGA  846

seq1  AGTTGTGGAAATGTGAGGTGCATATGGAGAATAATTTAAGCCACTTCAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGAAATGTGAGGTGCATATGGAGAATAATTTAAGCCACTTCAGT  896

seq1  CATCTTGCTGATGTTAAATGGAGCTTCCTGTAGTTCTTGTAGCAGAAAAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCTGATGTTAAATGGAGCTTCCTGTAGTTCTTGTAGCAGAAAAG  946

seq1  ACTTGTGTCTTGAATGTATTTTAAATATACACTAAAGCTAACCCCTGTTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTCTTGAATGTATTTTAAATATACACTAAAGCTAACCCCTGTTA  996

seq1  AGGGCATCATTGAATTGATAATTTCAAACAGTTTGTCAAACTCAGACATG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCATTGAATTGATAATTTCAAACAGTTTGTCAAACTCAGACATG  1046

seq1  TTCCAGAGAGGGTAAGGGAATCTTGAATGCATCATTTAGTATATTTTATA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGAGGGTAAGGGAATCTTGAATGCATCATTTAGTATATTTTATA  1096

seq1  ATGTCTTTTTTTTTTTTTTAGAGAATTC  1118
      ||||||||||||||||||||||||||||
seq2  ATGTCTTTTTTTTTTTTTTAGAGAATTC  1124


seq1: chr6_15775776_15776906
seq2: B6Ng01-299D01.g_66_1201

seq1  GAATTCTAATGAAGTTTTGCATATATAGAATTACATGCTATATTACCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGAAGTTTTGCATATATAGAATTACATGCTATATTACCTAT  50

seq1  ATATTTTTCTAAGCTGATCAAGTTTTGAGGATCTGTTCATGTTGCAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCTAAGCTGATCAAGTTTTGAGGATCTGTTCATGTTGCAATTG  100

seq1  AATAATTAGGATTTCTTCAGGAAATAGTAAATATTGGTGAAAGAAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAGGATTTCTTCAGGAAATAGTAAATATTGGTGAAAGAAAAATG  150

seq1  AGAAAATGTTTTAAACTAAGGCTCAGATTGCTTTATAAGTAGAAAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTTTTAAACTAAGGCTCAGATTGCTTTATAAGTAGAAAGAGAG  200

seq1  TGATATTCTCACCATATAAAATTATGGAAAAATGAAGGGCACAGATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCTCACCATATAAAATTATGGAAAAATGAAGGGCACAGATACAT  250

seq1  GACAGGTATCTGGCACATAAATTATTGATGAATAGGATTTCCTATGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTATCTGGCACATAAATTATTGATGAATAGGATTTCCTATGTACA  300

seq1  AGAAGCAGTAGAGTTAATTATATGTTGATATTATGTTATGTTGAGTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGTAGAGTTAATTATATGTTGATATTATGTTATGTTGAGTTATA  350

seq1  TCCTTGAATGTTTTCATTCTTATGTCTGATTTTTAACCTCTTTGACATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAATGTTTTCATTCTTATGTCTGATTTTTAACCTCTTTGACATCT  400

seq1  TAAAGTCAATAAACTGCTGGGTGATAGACGTTAGATATGTCAAGTATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAATAAACTGCTGGGTGATAGACGTTAGATATGTCAAGTATTGA  450

seq1  GCAGTACTCCCACCCTACTTCAACACTCCTGGTGTCCTCTTTTTCTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACTCCCACCCTACTTCAACACTCCTGGTGTCCTCTTTTTCTAGTT  500

seq1  AATCTTCTGGAAGAATAAGGAATAAAAATGATCACTTCTTCAAACCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTGGAAGAATAAGGAATAAAAATGATCACTTCTTCAAACCCCTT  550

seq1  CAATGCCTGGGAGAAAGCGCATCAACTCAGTAATTTCTTGAATTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCTGGGAGAAAGCGCATCAACTCAGTAATTTCTTGAATTTATAAA  600

seq1  TGAGCAAAAAAAAAAAAAACTGTGAAGTGATACTTTTAACTATTAGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAAAAAAAAAAAACTGTGAAGTGATACTTTTAACTATTAGATGC  650

seq1  TCTTTGGATTTTTTTTTTTTTGAGTTCTTACCAATGGAGACTCAAGCGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGATTTTTTTTTTTTTGAGTTCTTACCAATGGAGACTCAAGCGTT  700

seq1  TCAGAACCACATTAGTCAACTCTGAGCTACTTCACATATAACAGTTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCACATTAGTCAACTCTGAGCTACTTCACATATAACAGTTTGAA  750

seq1  GTTACTTAAAAGCTAAGTATAATCAGTACTTCATTTTCTATACTACAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAAAAGCTAAGTATAATCAGTACTTCATTTTCTATACTACAATA  800

seq1  GACACAAATACAGTATATGTTCCTAAACATTATAAGTATCTAGTTGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAATACAGTATATGTTCCTAAACATTATAAGTATCTAGTTGCCAG  850

seq1  AATATGAGACTTTCACATCATTGAAAATTGTAACATTGATATATATATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGACTTTCACATCATTGAAAATTGTAACATTGATATATATATCA  900

seq1  TCATCATCA-TCATTCAAGTACCAACTTGAGGGATGCACCCAATAACCAC  949
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TCATCATCATTCATTCAAGTACC-ACTTGAGGGATGCACCCAATAACCAC  949

seq1  -TTAGCAAGAAGACCAGAATCCACTTA-GGAAATTTTAG-AAATAAAGGA  996
       ||||| || |||||||| |||||||| ||||||||||| ||||||| ||
seq2  TTTAGCCAG-AGACCAGATTCCACTTAGGGAAATTTTAGAAAATAAACGA  998

seq1  AGAGTATCAAGAGTAAGATATAATAATCAGCAGTGTTGAGTTCAGTTAAG  1046
      |||||||||||||| |||||| || |||||||||||||||||||||||||
seq2  AGAGTATCAAGAGTTAGATATTAT-ATCAGCAGTGTTGAGTTCAGTTAAG  1047

seq1  TGACT-GAGTTC--AAACTAAACTAGTCTAAAACTAGTT--CACAGGGCT  1091
      ||||| ||||||  || |||||||||||| |||||||||  ||| |||| 
seq2  TGACTGGAGTTCCAAACCTAAACTAGTCTTAAACTAGTTTCCACGGGGCC  1097

seq1  TGACAGTTTGCTAAAGTCGTTAACAGCATTTGTCACTGTT  1131
      |||  |||  |||| ||||||||| ||| |||||||||||
seq2  TGAACGTTGCCTAAGGTCGTTAAC-GCAATTGTCACTGTT  1136


| Home | SequenceCutter | Blast | Download |