BAC Information

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BAC

Clone NameB6Ng01-299H14
Chromosome6 (Build37)
Map Location 49,776,251 - 49,776,992
singlet/doubletsinglet
Overlap geneNpy
Upstream geneTmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
Downstream geneLOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299H14.bB6Ng01-299H14.g
ACCGA094306GA094307
length7431,171
definitionB6Ng01-299H14.b B6Ng01-299H14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggttggttgcccaaagtgtgaagatgaacaaaatcaacggaag
ggcaggttaaccaagtgcaagccaccagctcgagtctaatcttgcagaaa
atcttaacaaatgatgtgagcgttgggtgatgaggatgagcattgtttgc
ttttgctccccttgagtctcagcacaggagcaatgagaaatctcgccaac
gtatttggatttagttctgctgggttggcacttagaacaacatctgtcag
ctttgtccagctgttgtgcctatttgttaatccatctggaccaggccaag
ttttcatttggaaatggagtggctgctgatgttccacgcctttccagtga
atggagaaaattgtgtaattagctatcaacttgtcaacacccttagcagt
gttctgtagcaggtagtttattttatctttacagaggaatgtaacctcag
gtccatatattgtccttaccatatcctactatttctgttggccagtagga
ccccatcatgcctcagggaaagcattagtgtctccaacagagaggggaga
gtgcaagatccagggtatgtcgggatgtgtaaggggggagcagtgatgac
cgggatgtaagtgtgggtgcactcgggcagcagcttcatttgtgcatcac
tgatgacctgagttcaatccccagaacccagggaagaaacagaaccaact
atgacttccatgagctgggggaagaggtatgtggggagggttt
gaattctcacctgaggaataccaaatggctaagaagtacctgaaaaaagg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcaaaatggctaagttcaaaaattcaggtgacagt
agatgctggcgaggatgtggagaaagaaacactcctccactgttggtggg
attgcaagcttgtacaaccactctggaaatcagtctggcggttcctcata
aaattggacatagtactaccggaggatcccgcaatacctctcctggacat
atatccagaagatgttccaaccggtaagaaggacacgtgctccactatgt
tcatagcagccttatttataattgtcgcgcccgctctcgaccagcaagaa
cgacgcgaccaccagtccttctaacagcagtttattcagtcctgattctt
cttgtttatatctcccccgaaccctgggcctctcactccttttatactct
ctctcatccacgcaccgcaggccacgccccctcgccagtcacgaggcttc
agctaatcagggcagcaggggcaaatctccaccaaattggattcacctgt
atcctggtacacctgcgcagcactcaagatgtttgtgtcttatatgagga
agtcaggtgcaagtcatatgacttagctgcagtccctggcgcctttggga
ctgccgccacacccgctccccacaataatagccagaagctggaaagaacc
cagatgtccctcaacagaggaatggatacagaaaatgtggtacatttaca
caatggagtactactcagctattaaaaagaatgaatttatgaaattccta
ggcaaatggatggacctgaagggcatcatcctgagtgaagtaacccaatc
acaaaagaactcacatgatatgtactcactgataagtggacattagtcca
gaaacttagaatacccaagatatagatacatttgcaaaacacaggaactc
aaggaggacgagaccaagtgtggacactttgccccttagattgggaacaa
acaccatcaggagtacagagaacaaagtttggagctgagacaaagaatga
ccatctctggacctgcattctcaggaattcatccatatcagccttcctaa
cggccttgacaccacactatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49776251_49776992
seq2: B6Ng01-299H14.b_48_790

seq1  GAATTCAGGTTGGTTGCCCAAAGTGTGAAGATGAACAAAATCAACGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGGTTGCCCAAAGTGTGAAGATGAACAAAATCAACGGAAG  50

seq1  GGCAGGTTAACCAAGTGCAAGCCACCAGCTCGAGTCTAATCTTGCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTTAACCAAGTGCAAGCCACCAGCTCGAGTCTAATCTTGCAGAAA  100

seq1  ATCTTAACAAATGATGTGAGCGTTGGGTGATGAGGATGAGCATTGTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACAAATGATGTGAGCGTTGGGTGATGAGGATGAGCATTGTTTGC  150

seq1  TTTTGCTCCCCTTGAGTCTCAGCACAGGAGCAATGAGAAATCTCGCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCCCCTTGAGTCTCAGCACAGGAGCAATGAGAAATCTCGCCAAC  200

seq1  GTATTTGGATTTAGTTCTGCTGGGTTGGCACTTAGAACAACATCTGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGATTTAGTTCTGCTGGGTTGGCACTTAGAACAACATCTGTCAG  250

seq1  CTTTGTCCAGCTGTTGTGCCTATTTGTTAATCCATCTGGACCAGGCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCAGCTGTTGTGCCTATTTGTTAATCCATCTGGACCAGGCCAAG  300

seq1  TTTTCATTTGGAAATGGAGTGGCTGCTGATGTTCCACGCCTTTCCAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTGGAAATGGAGTGGCTGCTGATGTTCCACGCCTTTCCAGTGA  350

seq1  ATGGAGAAAATTGTGTAATTAGCTATCAACTTGTCAACACCCTTAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAATTGTGTAATTAGCTATCAACTTGTCAACACCCTTAGCAGT  400

seq1  GTTCTGTAGCAGGTAGTTTATTTTATCTTTACAGAGGAATGTAACCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTAGCAGGTAGTTTATTTTATCTTTACAGAGGAATGTAACCTCAG  450

seq1  GTCCATATATTGTCCTTACCATATCCTACTATTTCTGTTGGCCAGTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATATATTGTCCTTACCATATCCTACTATTTCTGTTGGCCAGTAGGA  500

seq1  CCCCATCATGCCTCAGGGAAAGCATTAGTGTCTCCAACAGAGAGGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCATGCCTCAGGGAAAGCATTAGTGTCTCCAACAGAGAGGGGAGA  550

seq1  GTGCAAGATCCAGGGTATGTCGGGATGTGTAAGGGGGGAGCAGTGATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGATCCAGGGTATGTCGGGATGTGTAAGGGGGGAGCAGTGATGAC  600

seq1  CGGGATGTAAGTGTGGGTGCACTCGGGCAGCAGCTTCATTTGTGCATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATGTAAGTGTGGGTGCACTCGGGCAGCAGCTTCATTTGTGCATCAC  650

seq1  TGATGACCTGAGTTCAATCCCCAGAACCCAGGGAAGAAACAGAACCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCTGAGTTCAATCCCCAGAACCCAGGGAAGAAACAGAACCAACT  700

seq1  ATGACTTCCATGAGCTGGGGGAAGAGGTATGT-GGGAGGGTTT  742
      |||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGACTTCCATGAGCTGGGGGAAGAGGTATGTGGGGAGGGTTT  743