BAC Information

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BAC

Clone NameB6Ng01-299M08
Chromosome6 (Build37)
Map Location 84,316,324 - 84,452,964
singlet/doubletdoublet
Overlap genenone
Upstream geneD230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
Downstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299M08.bB6Ng01-299M08.g
ACCGA094520GA094521
length6141,048
definitionB6Ng01-299M08.b B6Ng01-299M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,452,351 - 84,452,964)(84,316,324 - 84,317,361)
sequence
gaattctctatgtagtgaggcatactctgactccatgccccttattcctg
agtcctgggattatagatgttcacccccacacctggcttgtttcttacag
agtctcactatatgtctcaggctggcctcaaacttaaagcaatcctcctg
tctcagtctctcgagttctgggattttaggcatgtaccgctatgcttagc
tatgcagtataaagtcttgacgtggactcttagaaacaggtgcactgtag
aaaaacaaaaggtaggagcttgggaaacaaggtggttgagtggccacaaa
ccagaacaaaatgattaaaaatgtattatgtcagcagtgatgtgcccaag
tttagaaaaaagagagaccatgaattatagatgggttcaagtacatgaac
acatgctacaatcgtggacgtatctggttccttattctaaacatgaaaaa
gcatgctgtcctgttaactgaaaacctgtgtctctccatctttactaaga
gctggacaaaacaagttttgatagattatttggataaccaaagcattcct
ctccagggctgagcagctgccctggcttttccctgatgcgcatggcttgg
gggtgggggtgggg
gaattcttggcaggggtggtaccttccaagccagcgctaggagaccccat
ggaagatgctggaagcttgaatgagaaactgccaggaagcttctcctgtc
caagtgccagtgtcctcccacctcctctcgggtctcccgctctggcagac
ttcaggcctcacactgccctctgcctctcacctcctaggcgttcccttgc
tcccagccccccatggccatagccactgccaagccctggcactgacacat
ggctcagcccctgcctggggccctctcagctccagtgacctctggatgcc
cctcccaggcccaccacacactgtgggttgttccagccgaaattcccttg
caccgtggaaagaggaaatgagagcaggggtgggggcaatgaatggtgga
aaaaaagaaaacgagatggaactgagtcctgaaagagagggaggactgaa
tcatgaaagagagggatgactgagttctgagagggagggaggactgaatc
ctcaaagagaggtagaattgagtcttgaaagagagggaggactggatcct
gaaagagaggggggaactgaatctgggaagagagggaggactgtcctgaa
agagagggaggactgaaggaagaagagaaagccagggttagttatccatc
tggggatgcactggggctatggagggaggaaatcaggacagacccatgag
gaatccagtctcttcttatagcaaagtctaggggtttgctttggcctaca
tttggtcctgcctctaccctgcttctttttggaatgagaactgctatcca
ccagggtttgtcaaaacacccagggacatctgaagtgctgaggaggcaag
gattgtgtaggcaacccagggccagagagtgggcttcacagaaggagcct
agagagagtcacatgttccttgtagtctgacttctcttcactccccatca
tttccctcccagatcttgcatcccactttccacccctttagggtccttga
tgctttcactagcctctctcttgccctgccccagatggtgtgtggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_84452351_84452964
seq2: B6Ng01-299M08.b_50_663 (reverse)

seq1  CCCCACCCCCACCCCCAAGCCATGCGCATCAGGGAAAAGCCAGGGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCACCCCCAAGCCATGCGCATCAGGGAAAAGCCAGGGCAGCT  50

seq1  GCTCAGCCCTGGAGAGGAATGCTTTGGTTATCCAAATAATCTATCAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCCTGGAGAGGAATGCTTTGGTTATCCAAATAATCTATCAAAAC  100

seq1  TTGTTTTGTCCAGCTCTTAGTAAAGATGGAGAGACACAGGTTTTCAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTCCAGCTCTTAGTAAAGATGGAGAGACACAGGTTTTCAGTTA  150

seq1  ACAGGACAGCATGCTTTTTCATGTTTAGAATAAGGAACCAGATACGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAGCATGCTTTTTCATGTTTAGAATAAGGAACCAGATACGTCCA  200

seq1  CGATTGTAGCATGTGTTCATGTACTTGAACCCATCTATAATTCATGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGTAGCATGTGTTCATGTACTTGAACCCATCTATAATTCATGGTCT  250

seq1  CTCTTTTTTCTAAACTTGGGCACATCACTGCTGACATAATACATTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTCTAAACTTGGGCACATCACTGCTGACATAATACATTTTTAA  300

seq1  TCATTTTGTTCTGGTTTGTGGCCACTCAACCACCTTGTTTCCCAAGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTCTGGTTTGTGGCCACTCAACCACCTTGTTTCCCAAGCTCC  350

seq1  TACCTTTTGTTTTTCTACAGTGCACCTGTTTCTAAGAGTCCACGTCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTGTTTTTCTACAGTGCACCTGTTTCTAAGAGTCCACGTCAAGA  400

seq1  CTTTATACTGCATAGCTAAGCATAGCGGTACATGCCTAAAATCCCAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACTGCATAGCTAAGCATAGCGGTACATGCCTAAAATCCCAGAAC  450

seq1  TCGAGAGACTGAGACAGGAGGATTGCTTTAAGTTTGAGGCCAGCCTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAGACTGAGACAGGAGGATTGCTTTAAGTTTGAGGCCAGCCTGAGA  500

seq1  CATATAGTGAGACTCTGTAAGAAACAAGCCAGGTGTGGGGGTGAACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGTGAGACTCTGTAAGAAACAAGCCAGGTGTGGGGGTGAACATCT  550

seq1  ATAATCCCAGGACTCAGGAATAAGGGGCATGGAGTCAGAGTATGCCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCAGGACTCAGGAATAAGGGGCATGGAGTCAGAGTATGCCTCAC  600

seq1  TACATAGAGAATTC  614
      ||||||||||||||
seq2  TACATAGAGAATTC  614

seq1: chr6_84316324_84317361
seq2: B6Ng01-299M08.g_69_1116

seq1  GAATTCTTGGCAGGGGTGGTACCTTCCAAGCCAGCGCTAGGAGACCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCAGGGGTGGTACCTTCCAAGCCAGCGCTAGGAGACCCCAT  50

seq1  GGAAGATGCTGGAAGCTTGAATGAGAAACTGCCAGGAAGCTTCTCCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGCTGGAAGCTTGAATGAGAAACTGCCAGGAAGCTTCTCCTGTC  100

seq1  CAAGTGCCAGTGTCCTCCCACCTCCTCTCGGGTCTCCCGCTCTGGCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCCAGTGTCCTCCCACCTCCTCTCGGGTCTCCCGCTCTGGCAGAC  150

seq1  TTCAGGCCTCACACTGCCCTCTGCCTCTCACCTCCTAGGCGTTCCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCCTCACACTGCCCTCTGCCTCTCACCTCCTAGGCGTTCCCTTGC  200

seq1  TCCCAGCCCCCCATGGCCATAGCCACTGCCAAGCCCTGGCACTGACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCCCCCATGGCCATAGCCACTGCCAAGCCCTGGCACTGACACAT  250

seq1  GGCTCAGCCCCTGCCTGGGGCCCTCTCAGCTCCAGTGACCTCTGGATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCCCCTGCCTGGGGCCCTCTCAGCTCCAGTGACCTCTGGATGCC  300

seq1  CCTCCCAGGCCCACCACACACTGTGGGTTGTTCCAGCCGAAATTCCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGGCCCACCACACACTGTGGGTTGTTCCAGCCGAAATTCCCTTG  350

seq1  CACCGTGGAAAGAGGAAATGAGAGCAGGGGTGGGGGCAATGAATGGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGGAAAGAGGAAATGAGAGCAGGGGTGGGGGCAATGAATGGTGGA  400

seq1  AAAAAAGAAAACGAGATGGAACTGAGTCCTGAAAGAGAGGGAGGACTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAACGAGATGGAACTGAGTCCTGAAAGAGAGGGAGGACTGAA  450

seq1  TCATGAAAGAGAGGGATGACTGAGTTCTGAGAGGGAGGGAGGACTGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAAGAGAGGGATGACTGAGTTCTGAGAGGGAGGGAGGACTGAATC  500

seq1  CTCAAAGAGAGGTAGAATTGAGTCTTGAAAGAGAGGGAGGACTGGATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAGAGGTAGAATTGAGTCTTGAAAGAGAGGGAGGACTGGATCCT  550

seq1  GAAAGAGAGGGGGGAACTGAATCTGGGAAGAGAGGGAGGACTGTCCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGGGGGAACTGAATCTGGGAAGAGAGGGAGGACTGTCCTGAA  600

seq1  AGAGAGGGAGGACTGAAGGAAGAAGAGAAAGCCAGGGTTAGTTATCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGAGGACTGAAGGAAGAAGAGAAAGCCAGGGTTAGTTATCCATC  650

seq1  TGGGGATGCACTGGGGCTATGGAGGGAGGAAATCAGGACAGACCCATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGCACTGGGGCTATGGAGGGAGGAAATCAGGACAGACCCATGAG  700

seq1  GAATCCAGTCTCTTCTTATAGCAAAGTCTAGGGGTTTGCTTTGGCCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGTCTCTTCTTATAGCAAAGTCTAGGGGTTTGCTTTGGCCTACA  750

seq1  TTTGGTCCTGCCTCTACCCTGCTTC-TTTTGGAATGAGAACTGCTATCCA  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGGTCCTGCCTCTACCCTGCTTCTTTTTGGAATGAGAACTGCTATCCA  800

seq1  CCAGGGTTTGTCAAAACACCCAGGGACATCTGAAGTGCTGAGGAGGCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTTGTCAAAACACCCAGGGACATCTGAAGTGCTGAGGAGGCAAG  850

seq1  GATTGTGTAGGCAACCCAGGGCCAGAGAGTGGGCTTCACAGAAGGAGCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTAGGCAACCCAGGGCCAGAGAGTGGGCTTCACAGAAGGAGCCT  900

seq1  AGAGAGAGTCACATGTT-CTTGTAGTCTGACTTCTCTTCACTCCCCATCA  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGAGAGTCACATGTTCCTTGTAGTCTGACTTCTCTTCACTCCCCATCA  950

seq1  -TTCCCTCCCAGATCCTTGCATCCCACTTTCCACCC--TTAGGGTCTTTG  995
       ||||||||||||| |||||||||||||||||||||  |||||||| |||
seq2  TTTCCCTCCCAGAT-CTTGCATCCCACTTTCCACCCCTTTAGGGTCCTTG  999

seq1  ATGC-TTCACTAGCCTCTCTCT--GCCTGCCCCAG--TGTGTGT-GTGT  1038
      |||| |||||||||||||||||   ||||||||||   |||||| ||||
seq2  ATGCTTTCACTAGCCTCTCTCTTGCCCTGCCCCAGATGGTGTGTGGTGT  1048