BAC Information

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BAC

Clone NameB6Ng01-301B04
Chromosome6 (Build37)
Map Location 104,475,814 - 104,574,872
singlet/doubletdoublet
Overlap geneCntn6
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneLOC384470, LOC100043716, LOC100043350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301B04.bB6Ng01-301B04.g
ACCGA095482GA095483
length1,107694
definitionB6Ng01-301B04.b B6Ng01-301B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,573,756 - 104,574,872)(104,475,814 - 104,476,505)
sequence
gaattctctctacatcctttttgctacatacatcactttaaacttcataa
acaccataattatgccagactgaattcgaatatgaaataagaaaatgaag
tagcatcctctgattcattatgctatattgttttctccccagtataaaca
ttagatgatgggaatagtttacagagaccgggtttaattttttttttcag
actcataatcaacaaaagatctttatatttctctgatgagcaggaataga
gtaccctgtgtgggagaggaccttggaatttctgtttattcttcaaggtt
ccaacagctctgatttgctgctgttatcgctgttgtttctgcttccttcc
ttccttccttccttccttccttccttccttcctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttccagttagtattt
gaacataaacattaactccaaaatgttttattgactttttcaggatttta
aatgggtaaggatgagccaggttttcccttctcctttttaaccaacattt
ctttctattccacatctatttctttgaatgttctttatcagagagaaaaa
taacacaagtgtatgcagcagtactcactagcgtgaacatgttccattca
aacaaataacacattttaagattaagtctcatttctagttattatagaaa
tgataaatgttcaatatggtttatttacaaacttcagaattctaactcaa
aactattcaactttgtccactaaaaataactatcagaaatcaataccttt
taatttggggatttttttcccaaaaattatgtgtaactaattcccaatgg
tactgggcattgaacctacactattatagatactatgcatatctcaagtc
ctaatctttattcttgggcctctttaaagctcccactgaatgtgttttcc
caacaacatataaagtaaacatattctctcttataatgaccttgtgagac
ttaacttcataaaatatcttgttttaaatatgagcataatctcatgtggt
gtatattgtctgcatgtttatggctttcttcagtaaatagcaaaaaaatt
catgttt

gaattcttaaaacgttatgggtcagagttttggctgtggtatggcaacgg
cctccctcacttcctgctggagtgggctgtataaattctctctccctgtt
gtcaggcatttcatctaaggtccctctatttgagtcctgagagtctctaa
cctcccaggtctctggtgcattctggagggtggggggtgaggacatcctt
gtggagacaagggagtggggaggaggtatgttacgcagaacagtcagagg
gtggaccggggtgggggtaataaaatctggagtgtaaaaaaataaataaa
agtttaaaaagaattaaaaataactacatattaataaagcacatataata
ttttatatatatatatatatatatatgtctgtgtatatataaaataagct
atataagataagaaattcctactgaaaatagttgcaaagctctaaatcca
gaatattgctgttagaggtagacggatcagaagttcagtgccatccacag
tcacattgtgaggtgagagccagcctggatcattcataaagacacatttc
aggcacatgagaaaaagaaatattgtaaaagaaggataatgtttaagtaa
tgtggtgcttttaatgttttaaagaggctgcagacttttagaataataaa
catctgatccaattattttggattaactggtaactacattcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_104573756_104574872
seq2: B6Ng01-301B04.b_47_1153 (reverse)

seq1  AAACATGATTTTTTTTGCTTATATTACTGAAGAAAGCCATAAACATGCAG  50
      |||||||| ||||||||| ||| |||||||||||||||||||||||||||
seq2  AAACATGAATTTTTTTGC-TAT-TTACTGAAGAAAGCCATAAACATGCAG  48

seq1  ACATATTACA-CACATGAAGAATTATGCTTCATATTTTAAAAACAGATTA  99
      |||   |||| |||||||   ||||||| ||||||||  ||||||   ||
seq2  ACAATATACACCACATGA--GATTATGC-TCATATTT--AAAACAAGATA  93

seq1  TTTTATGAAAGTTAAGTCTCACAAGGTCAATTAATAAGAGAGAATATGTT  149
      ||||||| |||||||||||||||||||||  | |||||||||||||||||
seq2  TTTTATG-AAGTTAAGTCTCACAAGGTCA--TTATAAGAGAGAATATGTT  140

seq1  TACTTTATATTGTTGTTGGGAAAACACATTCAGTGGGAGCTTTAAAGAGG  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATA-TGTTGTTGGGAAAACACATTCAGTGGGAGCTTTAAAGAGG  189

seq1  -CCAAGAATAAAGATTAGGACTTGAGATATGCATAGTATCTATAATAGTG  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAATAAAGATTAGGACTTGAGATATGCATAGTATCTATAATAGTG  239

seq1  TAGGTTCAATGCCCAGTACCATTGGGAATTAGTTACACATAATTTTTGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCAATGCCCAGTACCATTGGGAATTAGTTACACATAATTTTTGGG  289

seq1  AAAAAAATCCCCAAATTAAAAGGTATTGATTTCCTGATAGTTATTTTTAG  348
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAAAAATCCCCAAATTAAAAGGTATTGATTT-CTGATAGTTATTTTTAG  338

seq1  TGGACAAAGTTGAATAGTTTTGAGTTAGAATTCTGAAGTTTGTAAATAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAGTTGAATAGTTTTGAGTTAGAATTCTGAAGTTTGTAAATAAA  388

seq1  CCATATTGAACATTTATCATTTCTATAATAACTAGAAATGAGACTTAATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGAACATTTATCATTTCTATAATAACTAGAAATGAGACTTAATC  438

seq1  TTAAAATGTGTTATTTGTTTGAATGGAACATGTTCACGCTAGTGAGTACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTGTTATTTGTTTGAATGGAACATGTTCACGCTAGTGAGTACT  488

seq1  GCTGCATACACTTGTGTTATTTTTCTCTCTGATAAAGAACATTCAAAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATACACTTGTGTTATTTTTCTCTCTGATAAAGAACATTCAAAGAA  538

seq1  ATAGATGTGGAATAGAAAGAAATGTTGGTTAAAAAGGAGAAGGGAAAACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTGGAATAGAAAGAAATGTTGGTTAAAAAGGAGAAGGGAAAACC  588

seq1  TGGCTCATCCTTACCCATTTAAAATCCTGAAAAAGTCAATAAAACATTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATCCTTACCCATTTAAAATCCTGAAAAAGTCAATAAAACATTTT  638

seq1  GGAGTTAATGTTTATGTTCAAATACTAACTGGAAAGAAAGAAAGAAAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAATGTTTATGTTCAAATACTAACTGGAAAGAAAGAAAGAAAGAA  688

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAG  738

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGCAGAAACAACAGCGATAACAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGCAGAAACAACAGCGATAACAGC  788

seq1  AGCAAATCAGAGCTGTTGGAACCTTGAAGAATAAACAGAAATTCCAAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCAGAGCTGTTGGAACCTTGAAGAATAAACAGAAATTCCAAGGT  838

seq1  CCTCTCCCACACAGGGTACTCTATTCCTGCTCATCAGAGAAATATAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCACACAGGGTACTCTATTCCTGCTCATCAGAGAAATATAAAGA  888

seq1  TCTTTTGTTGATTATGAGTCTGAAAAAAAAAATTAAACCCGGTCTCTGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTGATTATGAGTCTGAAAAAAAAAATTAAACCCGGTCTCTGTA  938

seq1  AACTATTCCCATCATCTAATGTTTATACTGGGGAGAAAACAATATAGCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCCCATCATCTAATGTTTATACTGGGGAGAAAACAATATAGCAT  988

seq1  AATGAATCAGAGGATGCTACTTCATTTTCTTATTTCATATTCGAATTCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATCAGAGGATGCTACTTCATTTTCTTATTTCATATTCGAATTCAG  1038

seq1  TCTGGCATAATTATGGTGTTTATGAAGTTTAAAGTGATGTATGTAGCAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATAATTATGGTGTTTATGAAGTTTAAAGTGATGTATGTAGCAAA  1088

seq1  AAGGATGTAGAGAGAATTC  1117
      |||||||||||||||||||
seq2  AAGGATGTAGAGAGAATTC  1107


seq1: chr6_104475814_104476505
seq2: B6Ng01-301B04.g_66_759

seq1  GAATTCTTAAAACGTTATGGGTCAGAGTTTTGGCTGTGGTATGGCAACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAACGTTATGGGTCAGAGTTTTGGCTGTGGTATGGCAACGG  50

seq1  CCTCCCTCACTTCCTGCTGGAGTGGGCTGTATAAATTCTCTCTCCCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCACTTCCTGCTGGAGTGGGCTGTATAAATTCTCTCTCCCTGTT  100

seq1  GTCAGGCATTTCATCTAAGGTCCCTCTATTTGAGTCCTGAGAGTCTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCATTTCATCTAAGGTCCCTCTATTTGAGTCCTGAGAGTCTCTAA  150

seq1  CCTCCCAGGTCTCTGGTGCATTCTGGAGGGTGGGGGGTGAGGACATCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGGTCTCTGGTGCATTCTGGAGGGTGGGGGGTGAGGACATCCTT  200

seq1  GTGGAGACAAGGGAGTGGGGAGGAGGTATGTTACGCAGAACAGTCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACAAGGGAGTGGGGAGGAGGTATGTTACGCAGAACAGTCAGAGG  250

seq1  GTGGACCGGGGTGGGGGTAATAAAATCTGGAGTGTAAAAAAATAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCGGGGTGGGGGTAATAAAATCTGGAGTGTAAAAAAATAAATAAA  300

seq1  AGTTTAAAAAGAATTAAAAATAACTACATATTAATAAAGCACATATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAAAGAATTAAAAATAACTACATATTAATAAAGCACATATAATA  350

seq1  TTTTATATATATATATATATATATATGTCTGTGTATATATAAAATAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATATATATATATATATATGTCTGTGTATATATAAAATAAGCT  400

seq1  ATATAAGATAAGAAATTCCTACTGAAAATAGTTGCAAAGCTCTAAATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGATAAGAAATTCCTACTGAAAATAGTTGCAAAGCTCTAAATCCA  450

seq1  GAATATTGCTGTTAGAGGTAGACGGATCAGAAGTTCAGTGCCATCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGCTGTTAGAGGTAGACGGATCAGAAGTTCAGTGCCATCCACAG  500

seq1  TCACATTGTGAGGTGAGAGCCAGCCTGGATCATTCATAAAGACACATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTGTGAGGTGAGAGCCAGCCTGGATCATTCATAAAGACACATTTC  550

seq1  AGGCACATGAGAAAAAGAAATATTGTAAAAGAAGGATAATG-TTAAGTAA  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGCACATGAGAAAAAGAAATATTGTAAAAGAAGGATAATGTTTAAGTAA  600

seq1  TGTGGTGCTTTTAATG-TTTAAAGAGGCTGCAGACTTTTAGAATAATAAA  648
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTGGTGCTTTTAATGTTTTAAAGAGGCTGCAGACTTTTAGAATAATAAA  650

seq1  CATCTGATCCAATTATTTTGGATTAACTGGTAACCACATTCACT  692
      |||||||||||||||||||||||||||||||||| |||||||||
seq2  CATCTGATCCAATTATTTTGGATTAACTGGTAACTACATTCACT  694


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