BAC Information

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BAC

Clone NameB6Ng01-301D23
Chromosome6 (Build37)
Map Location 34,071,900 - 34,170,951
singlet/doubletdoublet
Overlap geneLrguk, Slc35b4
Upstream geneGm1401, Exoc4
Downstream geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301D23.bB6Ng01-301D23.g
ACCGA095608GA095609
length1,0451,180
definitionB6Ng01-301D23.b B6Ng01-301D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,071,900 - 34,072,935)(34,169,766 - 34,170,951)
sequence
gaattcttgcatgtgtggtcttcagtggatgtgtggtccacccaccggac
tgttcctctccggcagctgtcagtggccagtatcctctcatctaggggtg
gggcgttcattctcacgttccaccatgttgtttaaggctgtgtgacagct
acacatagtcggtctgtattttatattaattctaaaatatgtatatactt
aaggttcattagactatggcttagcatccagttgttgtatgagtgtattc
tgtgtacagaaaaagctattgaaaaatattttctgagttcttataagcta
atacctgtccgttccacgcgtaggcattgtcttcagagtgtagtgttcct
tatccctgtcacgggtgcttagcatttgcatgttgagtctccacacctga
aatacccgtccttttctcccagatcttaattcatatcctctctctctctc
tctctctctctctctctctctctcatccttgtatttcttctgatttagtt
gtttctgtagtaatatttccccttgtatctctagttcatttttgagttct
gccactccatttgtaggcaatttaattataattttatttgtttttttaat
gccttgtgtcttttactttatgtctttgtgtttactttgagacagcaagg
ttacagaatttaatctgttctatatgaaagctttgtctgaaggcctgggg
ctcaccttttatttttcctctcaggatacccgcatatgaaatttaactag
gtactttctgtcgccactacctgagctcctcctcagtttacaccattctt
ttttctgtgggttttgcccaattaaattggtctttcattctccttagctg
ctcttggtgcatgtggtggttggcatgagatgtcccctgtatccgcaggc
attctgaatgcttgagcctcaattggaatccctctgtgggttctctctct
ctctctcttcttgtgcgccgccctaactggcccaggtagacgatgtctgc
accaggattccttctgcacacgtttattcagtctgtttcttcttg
gaattctctaggaagtaagtcatacagttggtctcaacttctggtcccta
tcattcaggctggaagcaagatccacagggcacgtgactatacagtagca
aagcatcttgcttataagtgagttttgattaacgaaggaacacgtgccac
tgccaataagcataacatggcagtgtgctgatatttaaaaccatattcat
ttctattactaggtattatgttattagcatgatctgccactgtgtaacaa
aacactgaaattatttttgctatttttacaaaataacaaaaatatccatt
tcctttcctttcttaacttcagatttaggccaaggcaatgttgctttcat
cctaaacaagacttacaataatactttcccctctctccctctctatctca
ctgcatgtatgttgtgcacacatttccatgcacacatgtatgtagatgtg
caatttctgagagcctatcctcatacaacaaaatgaatttgtagtgaaca
acagtggtagagggagggtagagaaaaaaaaacaaagaagatagctggat
ggatgggcctccgaatctcaggggtaccggctaatgttagcatagcttgc
agactgtctagtcatttaatgaatcatagagacaagagagttacatttgc
tattctaaaaagccacaagtcagtgaatgcaaatgcgtcctattcagaaa
accaaattaaaggaactgctgggaattctctgcgtagttaaacagaacaa
tctctctcctctttaaggccatgtttacccttcagaaatcgcaggccccg
ggaagcctggagcgtggaccatatcatcttcaggagtgatgtgccgcatt
agccagactctgtccttcaaaagaagcagcaggagatccattattgtcct
gggcagcttctgtcagagctctgtggctccaaggaaagaaaatgggcgcc
agggctcctgtctagcgctgcagcaatgacaggcgtgttgggtggcccga
caccttggcttcttgactcatagccaggttcagcatgaagaacaactcaa
agtctgtgaaagaaaggtgggactgaattggacgaggcgagttaggacgt
ggcagcccccaaaaggtgacctgtgttatcaacagcgaacacttatgcag
gagcacatcgcttgttcagaacaccacggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34071900_34072935
seq2: B6Ng01-301D23.b_48_1092

seq1  GAATTCTTGCATGTGTGGTCTTCAGTGGATGTGTGGTCCACCCACCGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATGTGTGGTCTTCAGTGGATGTGTGGTCCACCCACCGGAC  50

seq1  TGTTCCTCTCCGGCAGCTGTCAGTGGCCAGTATCCTCTCATCTAGGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTCCGGCAGCTGTCAGTGGCCAGTATCCTCTCATCTAGGGGTG  100

seq1  GGGCGTTCATTCTCACGTTCCACCATGTTGTTTAAGGCTGTGTGACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTTCATTCTCACGTTCCACCATGTTGTTTAAGGCTGTGTGACAGCT  150

seq1  ACACATAGTCGGTCTGTATTTTATATTAATTCTAAAATATGTATATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGTCGGTCTGTATTTTATATTAATTCTAAAATATGTATATACTT  200

seq1  AAGGTTCATTAGACTATGGCTTAGCATCCAGTTGTTGTATGAGTGTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCATTAGACTATGGCTTAGCATCCAGTTGTTGTATGAGTGTATTC  250

seq1  TGTGTACAGAAAAAGCTATTGAAAAATATTTTCTGAGTTCTTATAAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAGAAAAAGCTATTGAAAAATATTTTCTGAGTTCTTATAAGCTA  300

seq1  ATACCTGTCCGTTCCACGCGTAGGCATTGTCTTCAGAGTGTAGTGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGTCCGTTCCACGCGTAGGCATTGTCTTCAGAGTGTAGTGTTCCT  350

seq1  TATCCCTGTCACGGGTGCTTAGCATTTGCATGTTGAGTCTCCACACCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGTCACGGGTGCTTAGCATTTGCATGTTGAGTCTCCACACCTGA  400

seq1  AATACCCGTCCTTTTCTCCCAGATCTTAATTCATATCCTCTCTCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCGTCCTTTTCTCCCAGATCTTAATTCATATCCTCTCTCTCTCTC  450

seq1  TCTCTCTCTCTCTCTCTCTCTCTCATCCTTGTATTTCTTCTGATTTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCATCCTTGTATTTCTTCTGATTTAGTT  500

seq1  GTTTCTGTAGTAATATTTCCCCTTGTATCTCTAGTTCATTTTTGAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTAGTAATATTTCCCCTTGTATCTCTAGTTCATTTTTGAGTTCT  550

seq1  GCCACTCCATTTGTAGGCAATTTAATTATAATTTTATTTGTTTTTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCCATTTGTAGGCAATTTAATTATAATTTTATTTGTTTTTTTAAT  600

seq1  GCCTTGTGTCTTTTAC-TTATGTCTTTGTGTTTACTTTGAGACAGC-AGG  648
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  GCCTTGTGTCTTTTACTTTATGTCTTTGTGTTTACTTTGAGACAGCAAGG  650

seq1  TTACAGAATTTAATCTGTTCTATATGAAAGCTTTGTCTGAAGGCCTGGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAATTTAATCTGTTCTATATGAAAGCTTTGTCTGAAGGCCTGGGG  700

seq1  CTCACC-TTTATTTTTCCTCTCAGGATACCCGCATATGAAATTTAACTAG  747
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTTTATTTTTCCTCTCAGGATACCCGCATATGAAATTTAACTAG  750

seq1  GTACTTTCTGTCGCCACTACCTGAGCTCCTCCTCAGTTTACACCATTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCTGTCGCCACTACCTGAGCTCCTCCTCAGTTTACACCATTCTT  800

seq1  TTTTCTGTGGGTTTTGCCCAATTAAATTTGTCTTTCATTCTCCTTAGCTG  847
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTCTGTGGGTTTTGCCCAATTAAATTGGTCTTTCATTCTCCTTAGCTG  850

seq1  CTCTTGGTGCATGTGGTGGTTGGCATGAGATGTCCCCTGTATCCGCAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTGCATGTGGTGGTTGGCATGAGATGTCCCCTGTATCCGCAGGC  900

seq1  A-TCTGAATGCTTGAGCCTCAATTGG-ATCCCTCTGTGGG-TCTCTCTCT  944
      | |||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  ATTCTGAATGCTTGAGCCTCAATTGGAATCCCTCTGTGGGTTCTCTCTCT  950

seq1  CTCTCTCTTCTTGTGCG-CGCCC-AACTGG-CCAGGAAGAACGATG-CTG  990
      ||||||||||||||||| ||||| |||||| ||||| || |||||| |||
seq2  CTCTCTCTTCTTGTGCGCCGCCCTAACTGGCCCAGGTAG-ACGATGTCTG  999

seq1  CAACAGGA-TCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTG  1036
      || ||||| |||||||||||||||||||||||| |||||||||||||
seq2  CACCAGGATTCCTTCTGCACACGTTTATTCAGT-CTGTTTCTTCTTG  1045

seq1: chr6_34169766_34170951
seq2: B6Ng01-301D23.g_67_1246 (reverse)

seq1  CCCGTGG---TCTGAACAGAGGATGTGCCTCCTGCATAAGTGCTCGCTGT  47
      |||||||   ||||||||   |||||| |||||||||||||| |||||||
seq2  CCCGTGGTGTTCTGAACAAGCGATGTG-CTCCTGCATAAGTGTTCGCTGT  49

seq1  TGATAGACACAGTGTCAAACCTCTGGGGGCTGCCACGTCCCTACTCGCCT  97
      ||||| |||||| ||| | | | |||||||||||||||||  ||||||||
seq2  TGATA-ACACAG-GTC-ACCTTTTGGGGGCTGCCACGTCCTAACTCGCCT  96

seq1  CGTCCCATTCAGTTCCCCACTTTCTGTCACAGACTTTGGAAGTTG-TCTT  146
      ||||| |||||| ||||  |||||| ||||||||||||  ||||| ||||
seq2  CGTCCAATTCAG-TCCCACCTTTCTTTCACAGACTTTG--AGTTGTTCTT  143

seq1  CATGCTGAAACCTGGCTATGAGTTAAAGGAAGGCCCAGGTGTC-GGCCAC  195
      ||||||| ||||||||||||||| ||  ||| ||| ||||||| ||||||
seq2  CATGCTG-AACCTGGCTATGAGTCAA--GAA-GCCAAGGTGTCGGGCCAC  189

seq1  CCAACACGCCTGTCAATTGCTGCAGCGCTAGACAGGAGCCCTGGCGCCCA  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAACACGCCTGTC-ATTGCTGCAGCGCTAGACAGGAGCCCTGGCGCCCA  238

seq1  TTTTCTTTCCCTGGAGCCACAGAGCTCTGACAGAAGCTGCCCAGGACAAT  295
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCCTTGGAGCCACAGAGCTCTGACAGAAGCTGCCCAGGACAAT  288

seq1  AATGGATCTCCTGCTGCTTCTTTTGAAGGACAGAGTCTGGCTAATGCGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATCTCCTGCTGCTTCTTTTGAAGGACAGAGTCTGGCTAATGCGGC  338

seq1  ACATCACTCCTGAAGATGATATGGTCCACGCTCCAGGCTT-CCGGGGCCT  394
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACATCACTCCTGAAGATGATATGGTCCACGCTCCAGGCTTCCCGGGGCCT  388

seq1  GCGATTTCTGAAGGGTAAACATGGCCTTAAAGAGGAGAGAGATTGTTCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTTCTGAAGGGTAAACATGGCCTTAAAGAGGAGAGAGATTGTTCTG  438

seq1  TTTAACTACGCAGAGAATTCCCAGCAGTTCCTTTAATTTGGTTTTCTGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTACGCAGAGAATTCCCAGCAGTTCCTTTAATTTGGTTTTCTGAA  488

seq1  TAGGACGCATTTGCATTCACTGACTTGTGGCTTTTTAGAATAGCAAATGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACGCATTTGCATTCACTGACTTGTGGCTTTTTAGAATAGCAAATGT  538

seq1  AACTCTCTTGTCTCTATGATTCATTAAATGACTAGACAGTCTGCAAGCTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTTGTCTCTATGATTCATTAAATGACTAGACAGTCTGCAAGCTA  588

seq1  TGCTAACATTAGCCGGTACCCCTGAGATTCGGAGGCCCATCCATCCAGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACATTAGCCGGTACCCCTGAGATTCGGAGGCCCATCCATCCAGCT  638

seq1  ATCTTCTTTGTTTTTTTTTCTCTACCCTCCCTCTACCACTGTTGTTCACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTGTTTTTTTTTCTCTACCCTCCCTCTACCACTGTTGTTCACT  688

seq1  ACAAATTCATTTTGTTGTATGAGGATAGGCTCTCAGAAATTGCACATCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCATTTTGTTGTATGAGGATAGGCTCTCAGAAATTGCACATCTA  738

seq1  CATACATGTGTGCATGGAAATGTGTGCACAACATACATGCAGTGAGATAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTGTGCATGGAAATGTGTGCACAACATACATGCAGTGAGATAG  788

seq1  AGAGGGAGAGAGGGGAAAGTATTATTGTAAGTCTTGTTTAGGATGAAAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAGAGGGGAAAGTATTATTGTAAGTCTTGTTTAGGATGAAAGC  838

seq1  AACATTGCCTTGGCCTAAATCTGAAGTTAAGAAAGGAAAGGAAATGGATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCCTTGGCCTAAATCTGAAGTTAAGAAAGGAAAGGAAATGGATA  888

seq1  TTTTTGTTATTTTGTAAAAATAGCAAAAATAATTTCAGTGTTTTGTTACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTATTTTGTAAAAATAGCAAAAATAATTTCAGTGTTTTGTTACA  938

seq1  CAGTGGCAGATCATGCTAATAACATAATACCTAGTAATAGAAATGAATAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCAGATCATGCTAATAACATAATACCTAGTAATAGAAATGAATAT  988

seq1  GGTTTTAAATATCAGCACACTGCCATGTTATGCTTATTGGCAGTGGCACG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAATATCAGCACACTGCCATGTTATGCTTATTGGCAGTGGCACG  1038

seq1  TGTTCCTTCGTTAATCAAAACTCACTTATAAGCAAGATGCTTTGCTACTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTCGTTAATCAAAACTCACTTATAAGCAAGATGCTTTGCTACTG  1088

seq1  TATAGTCACGTGCCCTGTGGATCTTGCTTCCAGCCTGAATGATAGGGACC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCACGTGCCCTGTGGATCTTGCTTCCAGCCTGAATGATAGGGACC  1138

seq1  AGAAGTTGAGACCAACTGTATGACTTACTTCCTAGAGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGAGACCAACTGTATGACTTACTTCCTAGAGAATTC  1180