BAC Information

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BAC

Clone NameB6Ng01-301J15
Chromosome6 (Build37)
Map Location 18,103,117 - 18,255,941
singlet/doubletdoublet
Overlap geneLOC636450, LOC100040751, Cftr
Upstream geneEG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301J15.bB6Ng01-301J15.g
ACCGA095870GA095871
length7551,105
definitionB6Ng01-301J15.b B6Ng01-301J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,103,117 - 18,103,870)(18,254,826 - 18,255,941)
sequence
gaattctaaaagacagcaagagtcgtggtcaaatcaggtcttgaaaacat
agcagtgcaatcgcagctgtggctagctctatggctggcgatgagcctgt
agcacgggactggatgttctaccatgtctctggctctcctccagggagct
gtcagtatctgggttcccacagtgctgagcacaaggcaggtgcaaaaagg
ttcaaggtttctgttccccattagaattgagggcatgcagttcctctaac
ttgaaggatggtggggtggaattcctgctctgttttgagggaaggaaggg
aagatctgtgcattgaataagttccagaacctgatataactcttcatatt
cctcagcctgtctttgataggagtgagaaatatccaggatcttttgagag
aaacttggctgtgatatttcccattcttgaagcttctggattttgtttgt
ttatttgtttgcttttgttttatatttataattagtattgttaataagta
aaaattaaatgcaatcgagattgtacacactttttaaaaagaataactga
tgataaattagtgctagtagtgaaagaatgtagttatacaactggttcaa
agttatctgagggaaatattttcttattctcaacaggtatttttttgtga
ctgtatctaatagctgtagagaacatcttgtttttgacactaatccacaa
gtggggtagtcatgcagtcctggggtagggataaagaagtggagatttta
agact
gaattccatgagacaccatcaatctctatatcacctttaatgttcaacat
tcgtaaaaatgctgaaagcaaagtactttttcctgatccagttcttccta
agagccccacctagaaggagaaagtgatggcattactcttgcaccaagga
tagcacctattatccaatcagcactgctccttggacagaaagcagtggaa
tgggttctcttctcatggagccacgtaagcctgtttacacactccgaatt
ctcatcactatctggaactgatctggaactcatcataatctgcaactgaa
atcagaaactggccatacagaactgtattcctgatgtgggcttcattgac
cactgacttttactaatgagaaaaagggagaaagtgtccatttaaagtca
aggaagagtaaaaacagtctatcttgatgcacgtcagctcaaaccagaag
cagggacctgctgcccgatgtacttttgaatatggatacaaacttgaagt
ttactcaaaataggcctaacactacttactgtccctggactaaacttatt
tcctcattggtggagcatgtacagttgtctagcatgtacaaggtccaggg
attgggccccggcattgaagaggcagatggattctgcccttaaggaatga
gcagtgtcaagttcaggcctgatgataagatacaggcatgttcagtaaag
tatacattctcacagaattcaggttgagtcgagagccaagatcactcagc
ttctcagcaatgtttgaatcaaatgctaactaacatatgactcttctggc
aagaaaggaaactctaagaagcaaaaaggatattaaactgttctcattat
gcaaagaccacagctgcaagagcacagcatcagattaaggctacttccca
ttacagagatcagttgtccaggtagccctcaaagctcacattctttgtat
gataataagctcagttccttgcatgactaactgatccacagaataagctg
cagtatatatgcacacttaatttgtttcatgctgtcacactgccccttta
tttcctattgtttgacctcttagagaatgtctttttgaaaggttcttaca
tatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18103117_18103870
seq2: B6Ng01-301J15.b_46_800

seq1  GAATTCTAAAAGACAGCAAGAGTCGTGGTCAAATCAGGTCTTGAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAAGACAGCAAGAGTCGTGGTCAAATCAGGTCTTGAAAACAT  50

seq1  AGCAGTGCAATCGCAGCTGTGGCTAGCTCTATGGCTGGCGATGAGCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCAATCGCAGCTGTGGCTAGCTCTATGGCTGGCGATGAGCCTGT  100

seq1  AGCACGGGACTGGATGTTCTACCATGTCTCTGGCTCTCCTCCAGGGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGGACTGGATGTTCTACCATGTCTCTGGCTCTCCTCCAGGGAGCT  150

seq1  GTCAGTATCTGGGTTCCCACAGTGCTGAGCACAAGGCAGGTGCAAAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATCTGGGTTCCCACAGTGCTGAGCACAAGGCAGGTGCAAAAAGG  200

seq1  TTCAAGGTTTCTGTTCCCCATTAGAATTGAGGGCATGCAGTTCCTCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTTTCTGTTCCCCATTAGAATTGAGGGCATGCAGTTCCTCTAAC  250

seq1  TTGAAGGATGGTGGGGTGGAATTCCTGCTCTGTTTTGAGGGAAGGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGATGGTGGGGTGGAATTCCTGCTCTGTTTTGAGGGAAGGAAGGG  300

seq1  AAGATCTGTGCATTGAATAAGTTCCAGAACCTGATATAACTCTTCATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGTGCATTGAATAAGTTCCAGAACCTGATATAACTCTTCATATT  350

seq1  CCTCAGCCTGTCTTTGATAGGAGTGAGAAATATCCAGGATCTTTTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCTGTCTTTGATAGGAGTGAGAAATATCCAGGATCTTTTGAGAG  400

seq1  AAACTTGGCTGTGATATTTCCCATTCTTGAAGCTTCTGGATTTTGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGCTGTGATATTTCCCATTCTTGAAGCTTCTGGATTTTGTTTGT  450

seq1  TTATTTGTTTGCTTTTGTTTTATATTTATAATTAGTATTGTTAATAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTGCTTTTGTTTTATATTTATAATTAGTATTGTTAATAAGTA  500

seq1  AAAATTAAATGCAATCGAGATTGTACACACTTTTTAAAAAGAATAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAATGCAATCGAGATTGTACACACTTTTTAAAAAGAATAACTGA  550

seq1  TGATAAATTAGTGCTAGTAGTGAAAGAATGTAGTTATACAACTGGTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATTAGTGCTAGTAGTGAAAGAATGTAGTTATACAACTGGTTCAA  600

seq1  AGTTATCTGAGGGAAATATTTTCTTATTCTCAACAGGTATTTTTTTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTGAGGGAAATATTTTCTTATTCTCAACAGGTATTTTTTTGTGA  650

seq1  CTGTATCTAATAGCTGTAGAGAACATCTTGTTTTTGACACTAATCCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTAATAGCTGTAGAGAACATCTTGTTTTTGACACTAATCCACAA  700

seq1  GTGGGGTAGTCATGCAGTCCTGGGGTAGGGATAAAGAAGTGGAGA-TTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGGGGTAGTCATGCAGTCCTGGGGTAGGGATAAAGAAGTGGAGATTTTA  750

seq1  AGACT  754
      |||||
seq2  AGACT  755

seq1: chr6_18254826_18255941
seq2: B6Ng01-301J15.g_68_1172 (reverse)

seq1  ATATATGTAAAGAACACTTTTCAAAAAGACCATTTTCTCCTTAAAGAGGT  50
      |||||||| ||||  || ||||||||||| |||| |||     |||||||
seq2  ATATATGT-AAGA--ACCTTTCAAAAAGA-CATTCTCT-----AAGAGGT  41

seq1  CAAACAATAGGAAATAAAGGGGCAGTGTGAACAGCATGAAACAAATTTAA  100
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  CAAACAATAGGAAATAAAGGGGCAGTGTG-ACAGCATGAAACAAA-TTAA  89

seq1  GTGTTGCATATATACTGCAGCTTATTCTGT-GATCAGTTAGTCATTGCAA  149
      ||| |||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GTG-TGCATATATACTGCAGCTTATTCTGTGGATCAGTTAGTCA-TGCAA  137

seq1  GGAACTGAGCTTA-TATCATAACAAAGAATGTGAGCTTTGAGGGCTACCT  198
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  GGAACTGAGCTTATTATCAT-ACAAAGAATGTGAGCTTTGAGGGCTACCT  186

seq1  GGACAACTGATCTCTGTAATGGGAAGTAGCCTTAATCTGATGCTGTGCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTGATCTCTGTAATGGGAAGTAGCCTTAATCTGATGCTGTGCTC  236

seq1  TTGCAGCTGTGGTCTTTGCATAATGAGAACAGTTTAATATCCTTTTTGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTGTGGTCTTTGCATAATGAGAACAGTTTAATATCCTTTTTGCT  286

seq1  TCTTAGAGTTTCC-TTCTTGCCAGAAGAGTCATATGTTAGTTAGCATTTG  347
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGTTTCCTTTCTTGCCAGAAGAGTCATATGTTAGTTAGCATTTG  336

seq1  ATTCAAACATTGCTGAGAAGCTGAGTGATCTTGGCTCTCGACTCAACCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACATTGCTGAGAAGCTGAGTGATCTTGGCTCTCGACTCAACCTG  386

seq1  AATTCTGTGAGAATGTATACTTTACTGAACATGCCTGTATCTTATCATCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTGAGAATGTATACTTTACTGAACATGCCTGTATCTTATCATCA  436

seq1  GGCCTGAACTTGACACTGCTCATTCCTTAAGGGCAGAATCCATCTGCCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAACTTGACACTGCTCATTCCTTAAGGGCAGAATCCATCTGCCTC  486

seq1  TTCAATGCCGGGGCCCAATCCCTGGACCTTGTACATGCTAGACAACTGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCCGGGGCCCAATCCCTGGACCTTGTACATGCTAGACAACTGTA  536

seq1  CATGCTCCACCAATGAGGAAATAAGTTTAGTCCAGGGACAGTAAGTAGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCCACCAATGAGGAAATAAGTTTAGTCCAGGGACAGTAAGTAGTG  586

seq1  TTAGGCCTATTTTGAGTAAACTTCAAGTTTGTATCCATATTCAAAAGTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCTATTTTGAGTAAACTTCAAGTTTGTATCCATATTCAAAAGTAC  636

seq1  ATCGGGCAGCAGGTCCCTGCTTCTGGTTTGAGCTGACGTGCATCAAGATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGCAGCAGGTCCCTGCTTCTGGTTTGAGCTGACGTGCATCAAGATA  686

seq1  GACTGTTTTTACTCTTCCTTGACTTTAAATGGACACTTTCTCCCTTTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTTACTCTTCCTTGACTTTAAATGGACACTTTCTCCCTTTTTC  736

seq1  TCATTAGTAAAAGTCAGTGGTCAATGAAGCCCACATCAGGAATACAGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGTAAAAGTCAGTGGTCAATGAAGCCCACATCAGGAATACAGTTC  786

seq1  TGTATGGCCAGTTTCTGATTTCAGTTGCAGATTATGATGAGTTCCAGATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCCAGTTTCTGATTTCAGTTGCAGATTATGATGAGTTCCAGATC  836

seq1  AGTTCCAGATAGTGATGAGAATTCGGAGTGTGTAAACAGGCTTACGTGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGATAGTGATGAGAATTCGGAGTGTGTAAACAGGCTTACGTGGC  886

seq1  TCCATGAGAAGAGAACCCATTCCACTGCTTTCTGTCCAAGGAGCAGTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGAAGAGAACCCATTCCACTGCTTTCTGTCCAAGGAGCAGTGCT  936

seq1  GATTGGATAATAGGTGCTATCCTTGGTGCAAGAGTAATGCCATCACTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGATAATAGGTGCTATCCTTGGTGCAAGAGTAATGCCATCACTTTC  986

seq1  TCCTTCTAGGTGGGGCTCTTAGGAAGAACTGGATCAGGAAAAAGTACTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAGGTGGGGCTCTTAGGAAGAACTGGATCAGGAAAAAGTACTTT  1036

seq1  GCTTTCAGCATTTTTACGAATGTTGAACATTAAAGGTGATATAGAGATTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGCATTTTTACGAATGTTGAACATTAAAGGTGATATAGAGATTG  1086

seq1  ATGGTGTCTCATGGAATTC  1116
      |||||||||||||||||||
seq2  ATGGTGTCTCATGGAATTC  1105