BAC Information

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BAC

Clone NameB6Ng01-301K11
Chromosome6 (Build37)
Map Location 126,681,257 - 126,822,091
singlet/doubletdoublet
Overlap geneKcna6, LOC667463, Ndufa9, Akap3
Upstream geneTmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1
Downstream geneDyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301K11.bB6Ng01-301K11.g
ACCGA095910GA095911
length9871,190
definitionB6Ng01-301K11.b B6Ng01-301K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,681,257 - 126,682,250)(126,820,926 - 126,822,091)
sequence
gaattcattcagccctaagaacagccccatcagatcaatgttgatattat
cccccatgtaacagaaagggaaactgagttgcaggacagcttcatacttg
cctggggtcactcagtaggaaaggatttaaacctgaacccctggctcatc
accactttattctaaagcagtgactctcaacctgtgagtcatgacccctt
tcggggaagtggagtgtcaaaaggacctttacacagaggtcacctaagac
caaccgaaaacatagatgtttacattacaatttataacagcagcaaaatt
gcagtaatgaagtagtaacagaaatgaatttatggttggagggggggtca
tcacaacctgaggaactgttttaaagggacacagcattgggaaggttaag
aaccattgctctaaaacctaatagcaaagagccccacccaggtttcagaa
gaccataaagggcaagaacccttggggttccttaaccttgggaggctgca
gagtaccttcagcttcctcgggcaagggtataagagctcagccagagttc
tgcagactcttacagctgcatgacagtcatactgtgtgttctctcagagc
acatctctgctgccgggagcaggttcatctccaggagacagcggttgtca
agcccccccccccccccccccagagaacagcaagcttgtcaaaaatagca
gctcgtagactgcgtagctgcaatttcctttccgaatgtcggctttgctt
tcactgaagggcccaggtctgaatgcattctgtgcatccagcagcagact
gccctaaggttccaggattggtttctaacggcagacatctgcatggagga
gtctaaaggatgtggaaagcaaatcttaccacttacccatgggtctgtgg
acttcgactcacggaatttcgtctatatatcagtgatgagtagagttaat
tttttaaaattgcattaacctgagctggtaggccccg
gaattcctcatgcagcagaaatacaccccaagaatgaaggctaaataaaa
aaaacattttcagacgggtttgccgaagtgggtgctgcaccctgggtttg
atctctagcacaaacagaagagaactcctttccagcatatgtgttctaga
agaatcactagaggaccacattagcccaaggcaattagaggccgagtaag
agaagctgtgactgtcagtacaaatgggtgactgtcctttaactcctaaa
aacaggagttaacacagatgcctgggccacagagtaacgcatcttaaaga
aaacaaaccaaataagacagcccctgaattatcacaatagagaaatgcaa
atggaacattggaaaacgttcagataaaccataaggaggcagaaaaggag
aagcagaaggacaaccacatctagagcaagcggctctagcactatgacca
tctcttagcgaagtggccggaaaattcataggggccagatacccacgggc
ctttcgagggtaagtcagaaacacatccttgtgtgaaggattatatttag
ttcccttcctgacaagtatgcaaaacccacccatagggggaacagtaact
cggtggtagagtacctgcctagtgtgtgtggagccgtggtattaactccc
agcaccgagaacacaaaaccacacaaacacaaaggaccaacatcaacaca
caaggcacacacagacacaagccaaggaggaaggtctgtgtgaccttagg
gtgggccagctctgtcagtactgcttccttcacagggtcacagttcttca
ctgtaaggttgtcctgtgctctatagggtgctgtatctgtggtatatcct
tggcctactgccacactagcaactgtcttccccactgggacagtcaaagg
tctccagacttaggcgtgtgtcctctggtgacaaaactgcatgcagtcaa
gaaccactgtaaagggctgtaaaccactgtagaatgcctttgcctagcat
attgaaggcctcattcgagcccccaacaaaagaaccaggaaagccaacac
ttagttggaacaggaaagtatttcgtattcattggataagatattaaaag
cattcacagccttttagtatccctgcaggtaagggcaagggaagaaactc
gagtcagttcaatcttagcctacactatgtgtaatgaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126681257_126682250
seq2: B6Ng01-301K11.b_50_1036

seq1  GAATTCATTCAGCCCTAAGAACAGCCCCATCAGATCAATGTTGATATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGCCCTAAGAACAGCCCCATCAGATCAATGTTGATATTAT  50

seq1  CCCCCATGTAACAGAAAGGGAAACTGAGTTGCAGGACAGCTTCATACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGTAACAGAAAGGGAAACTGAGTTGCAGGACAGCTTCATACTTG  100

seq1  CCTGGGGTCACTCAGTAGGAAAGGATTTAAACCTGAACCCCTGGCTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTCACTCAGTAGGAAAGGATTTAAACCTGAACCCCTGGCTCATC  150

seq1  ACCACTTTATTCTAAAGCAGTGACTCTCAACCTGTGAGTCATGACCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTATTCTAAAGCAGTGACTCTCAACCTGTGAGTCATGACCCCTT  200

seq1  TCGGGGAAGTGGAGTGTCAAAAGGACCTTTACACAGAGGTCACCTAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGAAGTGGAGTGTCAAAAGGACCTTTACACAGAGGTCACCTAAGAC  250

seq1  CAACCGAAAACATAGATGTTTACATTACAATTTATAACAGCAGCAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGAAAACATAGATGTTTACATTACAATTTATAACAGCAGCAAAATT  300

seq1  GCAGTAATGAAGTAGTAACAGAAATGAATTTATGGTTGGAGGGGGGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATGAAGTAGTAACAGAAATGAATTTATGGTTGGAGGGGGGGTCA  350

seq1  TCACAACCTGAGGAACTGTTTTAAAGGGACACAGCATTGGGAAGGTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCTGAGGAACTGTTTTAAAGGGACACAGCATTGGGAAGGTTAAG  400

seq1  AACCATTGCTCTAAAACCTAATAGCAAAGAGCCCCACCCAGGTTTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTGCTCTAAAACCTAATAGCAAAGAGCCCCACCCAGGTTTCAGAA  450

seq1  GACCATAAAGGGCAAGAACCCTTGGGGTTCCTTAACCTTGGGAGGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAAAGGGCAAGAACCCTTGGGGTTCCTTAACCTTGGGAGGCTGCA  500

seq1  GAGTACCTTCAGCTTCCTCGGGCAAGGGTATAAGAGCTCAGCCAGAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCTTCAGCTTCCTCGGGCAAGGGTATAAGAGCTCAGCCAGAGTTC  550

seq1  TGCAGACTCTTACAGCTGCATGACAGTCATACTGTGTGTTCTCTCAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTCTTACAGCTGCATGACAGTCATACTGTGTGTTCTCTCAGAGC  600

seq1  ACATCTCTGCTGCCGGGAGCAGGTTCATCTCCAGGAGACAGCGGTTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTGCTGCCGGGAGCAGGTTCATCTCCAGGAGACAGCGGTTGTCA  650

seq1  AG--CCCCCCCCCCCCCCCCCAGAGAACAGCAAGCTTGTCAAAAATAGCA  698
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCCCCCCCCCCCCCCCAGAGAACAGCAAGCTTGTCAAAAATAGCA  700

seq1  GCTCGTAGACTGCGTAGCTGCAATTTCCTTTCCGAATGTCGGCTTTGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTAGACTGCGTAGCTGCAATTTCCTTTCCGAATGTCGGCTTTGCTT  750

seq1  TCACTGAAGGGCCCAGGTCTGAATGCATTCTGTGCATCCAGCAGCAGACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAGGGCCCAGGTCTGAATGCATTCTGTGCATCCAGCAGCAGACT  800

seq1  GCCCTAAGGTTCCAGGATTGGTTTCTAACGGCAGACATCTGCATGGAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAGGTTCCAGGATTGGTTTCTAACGGCAGACATCTGCATGGAGGA  850

seq1  GTCTAAAAGGATGTGGAAAGCAAATCTTACCACTTAACCCATGGGTCTGT  898
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTCT-AAAGGATGTGGAAAGCAAATCTTACCACTT-ACCCATGGGTCTGT  898

seq1  GGAC-TCGACTCAGGGAAATTTCCTCTATAATATCAGTGATGAGGTTAGA  947
      |||| |||||||| || |||||| ||||| ||||||||||||||  ||||
seq2  GGACTTCGACTCACGG-AATTTCGTCTAT-ATATCAGTGATGAG--TAGA  944

seq1  GTTAAATTTTTTAAAAATTGTCATAAACCTGAGCTGGGTAGGCCCCG  994
      |||||  ||||| ||||||| ||| |||||||||| |||||||||||
seq2  GTTAA--TTTTTTAAAATTG-CATTAACCTGAGCT-GGTAGGCCCCG  987

seq1: chr6_126820926_126822091
seq2: B6Ng01-301K11.g_67_1256 (reverse)

seq1  GCCTCATTACATA---TGTA-GCTAAGATTGACTCTGACTTCTGATTCT-  45
      ||||||||||| |   |||| |||||||||||  ||||||   | |||| 
seq2  GCCTCATTACACATAGTGTAGGCTAAGATTGA-ACTGACTCGAGTTTCTT  49

seq1  --CCTGCCTCTACCT-CAGGG-TACTAAA--GCTGT--ATGCTTTTTATA  87
        | ||||  ||||| ||||| |||||||  |||||  |||||||| |||
seq2  CCCTTGCCCTTACCTGCAGGGATACTAAAAGGCTGTGAATGCTTTTAATA  99

seq1  TCTTATCTAATG-ATACG-AATACTTT-CTG-TCCAACT-AGTGTT-GCT  131
      ||||||| |||| ||||| |||||||| ||| ||||||| |||||| |||
seq2  TCTTATCCAATGAATACGAAATACTTTCCTGTTCCAACTAAGTGTTGGCT  149

seq1  TTTCTGTGTC-TTTGTT--GTGCTCGAATTGAGCCT--CATATGCTAGGC  176
      || |||  || ||||||  | ||||||||   ||||   |||||||||||
seq2  TTCCTGGTTCTTTTGTTGGGGGCTCGAATGAGGCCTTCAATATGCTAGGC  199

seq1  -AAGGCATTCTACAGTGGTTTACAGCCCTTTACAGTGGTTCTTGACTGCA  225
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATTCTACAGTGGTTTACAGCCCTTTACAGTGGTTCTTGACTGCA  249

seq1  TGCAGTTTTGTCACCAGAGGACACACGCCTAAGTCTGGAGACCTTTGACT  275
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTTGTCACCAGAGGACACACGCCTAAGTCTGGAGACCTTTGACT  299

seq1  GTCCCAGTGGGGAAGACAGTTGCTAGTGTGGCAGTAGGCCAAGGATATAC  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTGGGGAAGACAGTTGCTAGTGTGGCAGTAGGCCAAGGATATAC  349

seq1  CACAGATACAGCACCCTATAGAGCACAGGACAACCTTACAGTGAAGAACT  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATACAGCACCCTATAGAGCACAGGACAACCTTACAGTGAAGAACT  399

seq1  GTGACCCTGTGAAGGAAGCAGTACTGACAGAGCTGGCCCACCCTAAGGTC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTGTGAAGGAAGCAGTACTGACAGAGCTGGCCCACCCTAAGGTC  449

seq1  ACACAGACCTTCCTCCTTGGCTTGTGTCTGTGTGTGCCTTGTGTGTTGAT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACCTTCCTCCTTGGCTTGTGTCTGTGTGTGCCTTGTGTGTTGAT  499

seq1  GTTGGTCCTTTGTGTTTGTGTGGTTTTGTGTTCTCGGTGCTGGGAGTTAA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCCTTTGTGTTTGTGTGGTTTTGTGTTCTCGGTGCTGGGAGTTAA  549

seq1  TACCACGGCTCCACACACACTAGGCAGGTACTCTACCACCGAGTTACTGT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACGGCTCCACACACACTAGGCAGGTACTCTACCACCGAGTTACTGT  599

seq1  TCCCCCTATGGGTGGGTTTTGCATACTTGTCAGGAAGGGAACTAAATATA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTATGGGTGGGTTTTGCATACTTGTCAGGAAGGGAACTAAATATA  649

seq1  ATCCTTCACACAAGGATGTGTTTCTGACTTACCCTCGAAAGGCCCGTGGG  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCACACAAGGATGTGTTTCTGACTTACCCTCGAAAGGCCCGTGGG  699

seq1  TATCTGGCCCCTATGAATTTTCCGGCCACTTCGCTAAGAGATGGTCATAG  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGCCCCTATGAATTTTCCGGCCACTTCGCTAAGAGATGGTCATAG  749

seq1  TGCTAGAGCCGCTTGCTCTAGATGTGGTTGTCCTTCTGCTTCTCCTTTTC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAGCCGCTTGCTCTAGATGTGGTTGTCCTTCTGCTTCTCCTTTTC  799

seq1  TGCCTCCTTATGGTTTATCTGAACGTTTTCCAATGTTCCATTTGCATTTC  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTTATGGTTTATCTGAACGTTTTCCAATGTTCCATTTGCATTTC  849

seq1  TCTATTGTGATAATTCAGGGGCTGTCTTATTTGGTTTGTTTTCTTTAAGA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTGATAATTCAGGGGCTGTCTTATTTGGTTTGTTTTCTTTAAGA  899

seq1  TGCGTTACTCTGTGGCCCAGGCATCTGTGTTAACTCCTGTTTTTAGGAGT  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTACTCTGTGGCCCAGGCATCTGTGTTAACTCCTGTTTTTAGGAGT  949

seq1  TAAAGGACAGTCACCCATTTGTACTGACAGTCACAGCTTCTCTTACTCGG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACAGTCACCCATTTGTACTGACAGTCACAGCTTCTCTTACTCGG  999

seq1  CCTCTAATTGCCTTGGGCTAATGTGGTCCTCTAGTGATTCTTCTAGAACA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATTGCCTTGGGCTAATGTGGTCCTCTAGTGATTCTTCTAGAACA  1049

seq1  CATATGCTGGAAAGGAGTTCTCTTCTGTTTGTGCTAGAGATCAAACCCAG  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTGGAAAGGAGTTCTCTTCTGTTTGTGCTAGAGATCAAACCCAG  1099

seq1  GGTGCAGCACCCACTTCGGCAAACCCGTCTGAAAATGTTTTTTTTATTTA  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGCACCCACTTCGGCAAACCCGTCTGAAAATGTTTTTTTTATTTA  1149

seq1  GCCTTCATTCTTGGGGTGTATTTCTGCTGCATGAGGAATTC  1166
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATTCTTGGGGTGTATTTCTGCTGCATGAGGAATTC  1190