BAC Information

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BAC

Clone NameB6Ng01-302H03
Chromosome3 (Build37)6 (Build37)
Map Location 150,098,791 - 150,099,8759,625,934 - 9,626,035
singlet/doubletsingletsinglet
Overlap geneLOC100040455
Upstream geneLOC100040620, LOC100040633
Downstream geneLOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302H03.bB6Ng01-302H03.g
ACCGA096491GA096492
length1,084216
definitionB6Ng01-302H03.b B6Ng01-302H03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(150,098,791 - 150,099,875)(9,625,934 - 9,626,035)
sequence
gaattctccatcatactctctctgacaaagagaacacactatgttcattt
gacaagcaatttgtatttctaactagcttcagaacaattacttttcccct
aattgctaaaatgtctggggctgtatttagatggccacacatgcctgagt
gcaccaggccacatttaaaattcaaccagcaagcttgtcactgccccaat
caatagtagggaagcacaaaaattcagaccaccaggccagttagccttct
catttcacatcagctacaaggtgcagcctggcaatgtttgatttaattaa
tttcaaattaaagaaaggaaacaaagaaagaaaagaaagagtgcgctttg
gcctataactgatagaactgaatccaacgaaagctcattgtaaatcagcg
tggaatgaactcacttcgatgatgcttggaagaaaagcaaatttttcatt
gctgcacacttcattttcacctgtccaaaactaaattcatgttcttcaat
gggtaaataattgttttaatataaaataagtgtttaaaatgacatccggt
atacacagtgctttaaagaaagagcagtccttacacgctggcagtgtgaa
ttcaaactgagccagtcagtatggaaatcaacatggatgatcttcatcaa
aacagaaataaatagaatagaaatgccatatggcttagcaacaattctcc
cagagtttacctgaaagaatacatgtcagctatgtagagagcatcagcac
tcatgtgattatttctgcactaatcagggtagggaagataggggtcagca
cagaggtccaccagtgaatgggtagataaaaaaattattcaaaaaagagt
tttatttagctatgaataacaatgaaatcatgtgacatgctggataataa
atcacactgtattacaatgaaacacacatgagagagagggaaagagataa
ttagagataacacagatcgctgagtgtattaaaactaaacacattattag
aggaaagaaaacagtggagaactgacagcattacagaatagaaagcgtat
gtagatgcatacatgagtcaatggctgagaccag
aacatcatttcttggtatccacaggcatccaacatacatggaatatattg
acacagacagtcctatatatatatggatatatatatatatggatatatat
atatccatatatatatatatatggatatatatatatatggatatatatat
atatatatatatatatatatatatatatatatatatgtatatatatatat
atatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150098791_150099875
seq2: B6Ng01-302H03.b_46_1129

seq1  GAATTCTCCATCATACTCTCTCTGACAAAGAGAACACACTATGTTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCATACTCTCTCTGACAAAGAGAACACACTATGTTCATTT  50

seq1  GACAAGCAATTTGTATTTCTAACTAGCTTCAGAACAATTACTTTTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCAATTTGTATTTCTAACTAGCTTCAGAACAATTACTTTTCCCCT  100

seq1  AATTGCTAAAATGTCTGGGGCTGTATTTAGATGGCCACACATGCCTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTAAAATGTCTGGGGCTGTATTTAGATGGCCACACATGCCTGAGT  150

seq1  GCACCAGGCCACATTTAAAATTCAACCAGCAAGCTTGTCACTGCCCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGCCACATTTAAAATTCAACCAGCAAGCTTGTCACTGCCCCAAT  200

seq1  CAATAGTAGGGAAGCACAAAAATTCAGACCACCAGGCCAGTTAGCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTAGGGAAGCACAAAAATTCAGACCACCAGGCCAGTTAGCCTTCT  250

seq1  CATTTCACATCAGCTACAAGGTGCAGCCTGGCAATGTTTGATTTAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACATCAGCTACAAGGTGCAGCCTGGCAATGTTTGATTTAATTAA  300

seq1  TTTCAAATTAAAGAAAGGAAACAAAGAAAGAAAAGAAAGAGTGCGCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTAAAGAAAGGAAACAAAGAAAGAAAAGAAAGAGTGCGCTTTG  350

seq1  GCCTATAACTGATAGAACTGAATCCAACGAAAGCTCATTGTAAATCAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAACTGATAGAACTGAATCCAACGAAAGCTCATTGTAAATCAGCG  400

seq1  TGGAATGAACTCACTTCGATGATGCTTGGAAGAAAAGCAAATTTTTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAACTCACTTCGATGATGCTTGGAAGAAAAGCAAATTTTTCATT  450

seq1  GCTGCACACTTCATTTTCACCTGTCCAAAACTAAATTCATGTTCTTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACACTTCATTTTCACCTGTCCAAAACTAAATTCATGTTCTTCAAT  500

seq1  GGGTAAATAATTGTTTTAATATAAAATAAGTGTTTAAAATGACATCCGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATAATTGTTTTAATATAAAATAAGTGTTTAAAATGACATCCGGT  550

seq1  ATACACAGTGCTTTAAAGAAAGAGCAGTCCTTACACGCTGGCAGTGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGTGCTTTAAAGAAAGAGCAGTCCTTACACGCTGGCAGTGTGAA  600

seq1  TTCAAACTGAGCCAGTCAGTATGGAAATCAACATGGATGATCTTCATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGAGCCAGTCAGTATGGAAATCAACATGGATGATCTTCATCAA  650

seq1  AACAGAAATAAATAGAATAGAAATGCCATATGGCTTAGCAACAATTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATAAATAGAATAGAAATGCCATATGGCTTAGCAACAATTCTCC  700

seq1  CAGAGTTTACCTGAAAGAATACATGTCAGCTATGTAGAGAGCATCAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTACCTGAAAGAATACATGTCAGCTATGTAGAGAGCATCAGCAC  750

seq1  TCATGTGATTATTTCTGCACTAATCAGGGTAGGGAAGATAGGGGTCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGATTATTTCTGCACTAATCAGGGTAGGGAAGATAGGGGTCAGCA  800

seq1  CAGAGGTCCACCAGTGAATGGGTAGATAAAAAAATTATTCAAAAAAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCCACCAGTGAATGGGTAGATAAAAAAATTATTCAAAAAAGAGT  850

seq1  TTTATTTAGCTATGAATAACAATGAAATCATGTGACATGCTGGATAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAGCTATGAATAACAATGAAATCATGTGACATGCTGGATAATAA  900

seq1  ATCACACTGTATTACAATGAAACACACATGAGAGAGAGGGAAAGAGATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTGTATTACAATGAAACACACATGAGAGAGAGGGAAAGAGATAA  950

seq1  TTAGAGATAACACAGATCGCTGAGTGTATTAAAACTAAACACATTATTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATAACACAGATCGCTGAGTGTATTAAAACTAAACACATTATTAG  1000

seq1  AGGAAAGAAACAAGTGGAGAACTGACAGCATTACAGAATAGAAAGCGTAT  1050
      ||||||||||  ||||||||||||||||||||||||||||||||||||| 
seq2  AGGAAAGAAAACAGTGGAGAACTGACAGCATTACAGAATAGAAAGCGTA-  1049

seq1  TGTAGATGCATACATGAGTCAATGGCTGAGACCAG  1085
      |||||||||||||||||||||||||||||||||||
seq2  TGTAGATGCATACATGAGTCAATGGCTGAGACCAG  1084

seq1: chr6_9625934_9626035
seq2: B6Ng01-302H03.g_187_286 (reverse)

seq1  ATATATATATATATATATATATATATATACATGTATATATATATACATTA  50
      |||||||||||||||||||||||||||||||| ||||||||||||   ||
seq2  ATATATATATATATATATATATATATATACATATATATATATATA---TA  47

seq1  TATATATATAAAATGTATATATATATATATGTATATATATATATAT--AT  98
      ||||||||| | || |||||||||||||||  ||||||||||||||  ||
seq2  TATATATAT-ATATATATATATATATATATCCATATATATATATATCCAT  96

seq1  ATAT  102
      ||||
seq2  ATAT  100