BAC Information

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BAC

Clone NameB6Ng01-303C17
Chromosome6 (Build37)
Map Location 93,324,124 - 93,480,615
singlet/doubletdoublet
Overlap genenone
Upstream genePrickle2, LOC545866, A730049H05Rik, LOC384461, LOC100043253
Downstream geneLOC665831, Magi1, LOC100043262, LOC665856, Slc25a26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303C17.bB6Ng01-303C17.g
ACCGA097036GA097037
length1,0941,147
definitionB6Ng01-303C17.b B6Ng01-303C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,479,546 - 93,480,615)(93,324,124 - 93,325,273)
sequence
gaattctgagtgatgtcacattttgccatcaatatataaaaccagtgctg
gctagtcaattcagttatcagagataccagcaccgacccaaagccccgtc
atgcccaccaaacatgtctattttctctagaagttaagaaggtagagaag
ggatgaatcagaacatggtggagcctgatgctggagacatcccacctctg
ccccctaaggcagcatgcacactgatgggtggatgagcactgatggaaga
tgagcattttgaagacctcaggtcttcttggcttctaaggatcttgaacc
ctgtgagctgtgttcaaattccttttgagaagagagaaacagagctgctg
ctgctgctgtgctattaggagtgagagagagagagagagagagagagaga
gagagagagagagagagagagagaatctccagacagttcagtaattaagg
agattgctctgcttttttctggattgcacagtaccttccaacccctccaa
ggcttttgattgaacaacaacaacaaaacaaaaacaaaaacaaaaaacca
atgacgggaagcaatagaaccatacagcccaatagaattcttgtagtcaa
cactctttttatagcataccaccagccaaaatgtttacatataaattttg
gaaaaaaaaaaaaaccccaaaacaacaaacttttgtgcaaaaaagtaata
ttagagatggtcacctcattaaaaaaaataaacaaaatatttgtatagat
actttatgaccaggtattcgtacctggtgggtaaataaatatctgatatc
agtttccattaattgtcacaaattgcaaatgaatataatgaaatattact
gcacaccccaccaaaatgggcttaattgactatgtgtttttcaggtgaac
atgtgttcacctgtttaacacatatcatgggaagtataactttatgatcc
atggacgaccaagatttgatcatagggtaataccacttgaaagtatatgt
gaaatattctttaattgattcctttgactattttagaccctttataccaa
tgtgtaattggactatattttatcccgggcactccctaagtccc
gaattcaaggccagtctggccaacacagcaagttccagcacagccaaggc
taagacaatcaaatatatatatggaaaatgtgggcagtgtaattaacata
aaataataatgtgtttactttggggaatagtaaagagcagaaaagagttt
tgacttagaaaaagtggacaatatattcttaagaggtaaatttgaattgt
ttctgggtatccatattattttgactctttaaactgtataaatccctttc
attcagtgtcatatgtatgtgacattggatggggcattggagggcagtta
ggtggtttatgtcattttgattttgatacaggatctccttctgtatcctg
ggatggcatctaactcagtaggtagcgcaggataggcttggatttccaag
gatcctcctacttctgtctcttgactgatgagatgagagatataaatcac
ttttttcagcttgcatcccctttaacgtaccagatagttttgaaatgttt
tcaagtatttttaatctcaataaaaatgaaaaattaatatctaaagtagt
tatggctttctcatgaaggaggcaaagaaacatcaagaagagatgttcag
tggaggagagaaaatgatgagatgttcctgtatgggtaatatttatacta
aaggagaattaggtaataattgaaagaacataagcataaatcactcaaag
tccatttctaacctctgtgcccactgctcccaataccctcaactaatact
caaacatattccaaatggctcaatagctggtgtaaccaacagctgtacat
atatagattacgtccattctggactctagaatcaggtcattaaatgtgaa
aaatgctaatcaggttagcctttggaagattttaatcaggaattcacagt
ccagtatctccaaagccaggcatttcaacaccctgaaagttacaccagag
gattctcaaattagtgtatagatgttgggaaataactcattcactggtga
gtgaatgatatttacgttatttaaatgggcagaagagctttcactttata
gagatgaggatgagatctcagccgagcaagcagccttacaatcagcctgc
agagaagggccatccattcaggtgtagaactcacgatcaggggtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93479546_93480615
seq2: B6Ng01-303C17.b_42_1135 (reverse)

seq1  GGGATTTAGGGAGTG-CAGGGAT-AAATATAATC--AATACACATT-GTA  45
      |||| |||||||||| | ||||| ||||||| ||  | |||||||| |||
seq2  GGGACTTAGGGAGTGCCCGGGATAAAATATAGTCCAATTACACATTGGTA  50

seq1  TAAA-TGTCTAAAATTATCAAAGG-ATCAAT--AAAAATATT--ACATAT  89
      ||||  |||||||||  ||||||| ||||||  || ||||||  ||||||
seq2  TAAAGGGTCTAAAATAGTCAAAGGAATCAATTAAAGAATATTTCACATAT  100

seq1  A-TTTC-AGTGGTAT--ACCTATGATC-AATCTTGGTCTTCCAATGATCA  134
      | |||| ||||||||   ||||||||| |||||||||| ||||  |||||
seq2  ACTTTCAAGTGGTATTACCCTATGATCAAATCTTGGTCGTCCATGGATCA  150

seq1  T-AAGTTATACTT-CCATGATATGTGTTAAACAGGTGAACACATGTTCAC  182
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTATACTTCCCATGATATGTGTTAAACAGGTGAACACATGTTCAC  200

seq1  CTGAAAAACACATAGTCAATTTAG-CCATTTTGGT-GGGTGTGCAGTAAT  230
      ||||||||||||||||||||| || |||||||||| ||||||||||||||
seq2  CTGAAAAACACATAGTCAATTAAGCCCATTTTGGTGGGGTGTGCAGTAAT  250

seq1  ATTTCATTATATTCATTTGCATTTTGTGACAATTAAT-GAAACTGATATC  279
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  ATTTCATTATATTCATTTGCAATTTGTGACAATTAATGGAAACTGATATC  300

seq1  AGATATTTA-TTACCCACCAGGTACGAATACCTGGTCATAAAGTATCTAT  328
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTATTTACCCACCAGGTACGAATACCTGGTCATAAAGTATCTAT  350

seq1  ACAAATATTTTGTTTATTTTTTTTAATGAGGTGACCATCTCTAATATTAC  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTTTGTTTATTTTTTTTAATGAGGTGACCATCTCTAATATTAC  400

seq1  -TTTTTGCACAAAAGTTTGTTGTTTTGGGG-TTTTTTTTTTTTCCAAAAT  426
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTTGCACAAAAGTTTGTTGTTTTGGGGTTTTTTTTTTTTTCCAAAAT  450

seq1  TTATATGTAAACATTTTGGCTGGTGGTATGCTATAAAAAGAGTGTTGACT  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTAAACATTTTGGCTGGTGGTATGCTATAAAAAGAGTGTTGACT  500

seq1  ACAAGAATTCTATTGGGCTGTATGGTTCTATTGCTTCCCGTCATTGGTTT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATTCTATTGGGCTGTATGGTTCTATTGCTTCCCGTCATTGGTTT  550

seq1  TTTGTTTTTGTTTTTGTTTTGTTGTTGTTGTTCAATCAAAAGCCTTGGAG  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTGTTTTGTTGTTGTTGTTCAATCAAAAGCCTTGGAG  600

seq1  GGGTTGGAAGGTACTGTGCAATCCAGAAAAAAGCAGAGCAATCTCCTTAA  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGAAGGTACTGTGCAATCCAGAAAAAAGCAGAGCAATCTCCTTAA  650

seq1  TTACTGAACTGTCTGGAGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAACTGTCTGGAGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  700

seq1  TCTCTCTCTCTCTCTCTCTCTCACTCCTAATAGCACAGCAGCAGCAGCAG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCACTCCTAATAGCACAGCAGCAGCAGCAG  750

seq1  CTCTGTTTCTCTCTTCTCAAAAGGAATTTGAACACAGCTCACAGGGTTCA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTCTCTCTTCTCAAAAGGAATTTGAACACAGCTCACAGGGTTCA  800

seq1  AGATCCTTAGAAGCCAAGAAGACCTGAGGTCTTCAAAATGCTCATCTTCC  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTTAGAAGCCAAGAAGACCTGAGGTCTTCAAAATGCTCATCTTCC  850

seq1  ATCAGTGCTCATCCACCCATCAGTGTGCATGCTGCCTTAGGGGGCAGAGG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGCTCATCCACCCATCAGTGTGCATGCTGCCTTAGGGGGCAGAGG  900

seq1  TGGGATGTCTCCAGCATCAGGCTCCACCATGTTCTGATTCATCCCTTCTC  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTCTCCAGCATCAGGCTCCACCATGTTCTGATTCATCCCTTCTC  950

seq1  TACCTTCTTAACTTCTAGAGAAAATAGACATGTTTGGTGGGCATGACGGG  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTTAACTTCTAGAGAAAATAGACATGTTTGGTGGGCATGACGGG  1000

seq1  GCTTTGGGTCGGTGCTGGTATCTCTGATAACTGAATTGACTAGCCAGCAC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGTCGGTGCTGGTATCTCTGATAACTGAATTGACTAGCCAGCAC  1050

seq1  TGGTTTTATATATTGATGGCAAAATGTGACATCACTCAGAATTC  1070
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATATATTGATGGCAAAATGTGACATCACTCAGAATTC  1094

seq1: chr6_93324124_93325273
seq2: B6Ng01-303C17.g_68_1214

seq1  GAATTCAAGGCCAGTCTGGCCAACACAGCAAGTTCCAGCACAGCCAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGTCTGGCCAACACAGCAAGTTCCAGCACAGCCAAGGC  50

seq1  TAAGACAATCAAATATATATATGGAAAATGTGGGCAGTGTAATTAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAATCAAATATATATATGGAAAATGTGGGCAGTGTAATTAACATA  100

seq1  AAATAATAATGTGTTTACTTTGGGGAATAGTAAAGAGCAGAAAAGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATGTGTTTACTTTGGGGAATAGTAAAGAGCAGAAAAGAGTTT  150

seq1  TGACTTAGAAAAAGTGGACAATATATTCTTAAGAGGTAAATTTGAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAGAAAAAGTGGACAATATATTCTTAAGAGGTAAATTTGAATTGT  200

seq1  TTCTGGGTATCCATATTATTTTGACTCTTTAAACTGTATAAATCCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTATCCATATTATTTTGACTCTTTAAACTGTATAAATCCCTTTC  250

seq1  ATTCAGTGTCATATGTATGTGACATTGGATGGGGCATTGGAGGGCAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGTCATATGTATGTGACATTGGATGGGGCATTGGAGGGCAGTTA  300

seq1  GGTGGTTTATGTCATTTTGATTTTGATACAGGATCTCCTTCTGTATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTATGTCATTTTGATTTTGATACAGGATCTCCTTCTGTATCCTG  350

seq1  GGATGGCATCTAACTCAGTAGGTAGCGCAGGATAGGCTTGGATTTCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCATCTAACTCAGTAGGTAGCGCAGGATAGGCTTGGATTTCCAAG  400

seq1  GATCCTCCTACTTCTGTCTCTTGACTGATGAGATGAGAGATATAAATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCTACTTCTGTCTCTTGACTGATGAGATGAGAGATATAAATCAC  450

seq1  TTTTTTCAGCTTGCATCCCCTTTAACGTACCAGATAGTTTTGAAATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGCTTGCATCCCCTTTAACGTACCAGATAGTTTTGAAATGTTT  500

seq1  TCAAGTATTTTTAATCTCAATAAAAATGAAAAATTAATATCTAAAGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATTTTTAATCTCAATAAAAATGAAAAATTAATATCTAAAGTAGT  550

seq1  TATGGCTTTCTCATGAAGGAGGCAAAGAAACATCAAGAAGAGATGTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTTCTCATGAAGGAGGCAAAGAAACATCAAGAAGAGATGTTCAG  600

seq1  TGGAGGAGAGAAAATGATGAGATGTTCCTGTATGGGTAATATTTATACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGAGAAAATGATGAGATGTTCCTGTATGGGTAATATTTATACTA  650

seq1  AAGGAGAATTAGGTAATAATTGAAAGAACATAAGCATAAATCACTCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATTAGGTAATAATTGAAAGAACATAAGCATAAATCACTCAAAG  700

seq1  TCCATTTCTAACCTCTGTGCCCACTGCTCCCAATACCCTCAACTAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCTAACCTCTGTGCCCACTGCTCCCAATACCCTCAACTAATACT  750

seq1  CAAACATATTCCAAATGGCTCAATAGCTGGTGTAACCAACAGCTGTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATATTCCAAATGGCTCAATAGCTGGTGTAACCAACAGCTGTACAT  800

seq1  ATATAGATTACGTCCATTCTGGACTCTAGAATCAGGTCATTAAATGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATTACGTCCATTCTGGACTCTAGAATCAGGTCATTAAATGTGAA  850

seq1  AAATGCTAATCAGGTTAGCCTTTGGAAGATTTTAATCAGGAATTCACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAATCAGGTTAGCCTTTGGAAGATTTTAATCAGGAATTCACAGT  900

seq1  CCAGTATCTCCAAAGCCAGGCATTTCAAACACCCTGAAAGTTACACCAGA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGTATCTCCAAAGCCAGGCATTTC-AACACCCTGAAAGTTACACCAGA  949

seq1  GGATTCTCAAATTAGTGTAATAGATGTT-GGAAATAACTCATTCACTGGT  999
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  GGATTCTCAAATTAGTGT-ATAGATGTTGGGAAATAACTCATTCACTGGT  998

seq1  GAAGTGAATGATATTTAAGGTATTTAAAT-GGCAGGAAAGAGCTTTCACC  1048
      | ||||||||||||||| | ||||||||| |||||  ||||||||||| |
seq2  G-AGTGAATGATATTTACGTTATTTAAATGGGCAG--AAGAGCTTTCA-C  1044

seq1  TTTATAGAGATGAGGGATGAGAACCCAGCGAGGCGAGGGGAGCCTAACAA  1098
      ||||||||||||| |||||||| | ||||   || |  | ||||| ||||
seq2  TTTATAGAGATGA-GGATGAGATCTCAGCCGAGCAA--GCAGCCTTACAA  1091

seq1  TTCAG-CTGCAGAGA--GGGCATCCATTCAGGTGTAG-ACCCACG-TCAG  1143
       |||| |||||||||  || ||||||||||||||||| || |||| ||||
seq2  -TCAGCCTGCAGAGAAGGGCCATCCATTCAGGTGTAGAACTCACGATCAG  1140

seq1  GGGTGCT  1150
      |||||||
seq2  GGGTGCT  1147