BAC Information

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BAC

Clone NameB6Ng01-303J12
Chromosome6 (Build37)
Map Location 125,131,895 - 125,132,998
singlet/doubletsinglet
Overlap geneNcapd2
Upstream geneVmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh
Downstream geneMrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303J12.bB6Ng01-303J12.g
ACCGA097357GA097358
length1,1201,201
definitionB6Ng01-303J12.b B6Ng01-303J12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagccttttttttttttttcttttgcatacccacacctggcttc
taggttgttttttgagaaagtagctttcagttaggctggaagtgtgcgcc
tagagtctgagacccagagggctgagaggaaggaggacccagctgaggtt
ataaagcaaaactgtccccaaaatagaattttgcataaaatagacaaggt
tgtctagatttaccactgtgacattcctatggggaagcacaggaggagcc
ctttataagtggtatttctggatttgtgcagtactggtagacgagatagc
catcccacagcctgtctaatgagaatgacttagctttggtgcccagtcca
tgcactccttggcctggagcctctcgcccccatctggctagcctcacttt
ctacagacaatgagctgtctcaaccaaactctgctgttctttttacttct
ctttcctggatgcttacctggcctcttcccaggctagcgctgggggttcc
taggtaaatgtcaaagacagtctactcattgatctaattttctttaactt
ctgtgtgcaactgttctctggctcttggccgaggcagggggaaaaatccc
ctgtcctagtctctcccggattacataatacacttcttggcactgaggcc
gctttctgctcttctgtgtccctaaggagtaagaaggaaagcaaatgttt
attcataaggctcaaacgttttgtggcctcatataaaggatgagaagaaa
tgttcctcaaatgtgcattgatggatagacctgatttaggtttttaattg
ttatttgccaggcatggtgacactcatcttaaatccctgtacccagaatg
cagaggcaggtggctctctctgaggccagcctgcttgtcatacttgtagg
cccagacagggctacttagcgtgtatgtgtattaatgtgtacatacatgt
ggaagtttggctctcttcccttcacctgggccctggggaatcaaacctcc
cgactatccaagcctttagttggcagcacctgaacctgctgaaccgtctt
tgaaccagtgccagatggttatcacgtattagtttaggcacagaatccct
gattctgaaccatattcaga
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagcccccgccctgcgtagtgcgtcagca
atgcgcagagaggcaatgcgcagagagatgcgcagagaggcagtgcgcag
agaggcagtgcgcagactcattcattcccagagaggaacaaaggaaaata
caacaggcatttccagtctttgaaggagccgagggtgggcgtgtccacgc
tccggtagaatacttacaaattaaagaactcgccgagtcggtccgtaaat
acggaaccaatgctaattttaccttggtgcagttagacaggcttgccggc
atggcactaactcctgccgactggcaaacggttgtaaaagccgctctccc
tagtatgggcaaatatatggaatggagagctctttggcatgaaactgcac
aagcgcaggcccgagcaaacgcagctgctttgactccagagcagagagat
tggacttttgacttgttaacgggtcagggagcttattctgctgatcagac
aaactaccattggggagcttatgcccagatttcttccacggctattaggg
cctggaaggcgctctctcgagcaggtgaaaccactggtgcagttaacaaa
gataatccagggacctcagaatccttctcagatttttgtggccagaatga
cagaggcagcagagcgtatttttggagagtcagagcaagctgcgcctctg
atagaacagctaatctatgagcaagccacaaaggagtgccgagcggccat
agccccaagaaagaacaaaggctttacaagactggcctcagggttctgtc
ggagagcttggggggacctctcagccaatgcaaggttttagccggcctgc
catcccttccaatcccaaaaccgcttccatggccaagaaatattccagag
gacatgttttaactggcggaagccctggcattttaagaaagattgccaga
gctccaagataaacagggagggacctctcaactcctttgctctaagttgt
gccaggtaatccaatagaagcctgaacgcaggtgttctctgccctcctct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_125131895_125132998
seq2: B6Ng01-303J12.b_47_1166 (reverse)

seq1  TCTGATTATGTTTCAGAATCAGGATTTCTGTTGCTTAAACT-ATACGTGA  49
      ||||| |||| ||||||||||||  ||||| ||| |||||| ||||||||
seq2  TCTGAATATGGTTCAGAATCAGGGATTCTG-TGCCTAAACTAATACGTGA  49

seq1  ATACCATCTGGCACTGGT---CAGACGGTTCAGCAGG-TCAGGTGCTTGC  95
        ||||||||||||||||    ||||||||||||||| |||||||||  |
seq2  TAACCATCTGGCACTGGTTCAAAGACGGTTCAGCAGGTTCAGGTGCTGCC  99

seq1  CACTAA--GCTT-GATAGTCGG--AGTTTGA-TCCCCAGGGCC--AGTGA  137
       |||||  |||| |||||||||   |||||| |||||||||||   ||||
seq2  AACTAAAGGCTTGGATAGTCGGGAGGTTTGATTCCCCAGGGCCCAGGTGA  149

seq1  AGGG-AGAGAGCC-AACTTCCACATGTATGTACACATT-ATACACATACA  184
      |||| |||||||| |||||||||||||||||||||||| |||||||||||
seq2  AGGGAAGAGAGCCAAACTTCCACATGTATGTACACATTAATACACATACA  199

seq1  CGCTAAGTAGCCCTGTCT-GGCCTACAAGTATGACAAGCAGGCTGGCCTC  233
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CGCTAAGTAGCCCTGTCTGGGCCTACAAGTATGACAAGCAGGCTGGCCTC  249

seq1  AGAGAGAGCCACCTGCCTCTGCATTCTGGGTACAGGGATTTAAGATGAGT  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCCACCTGCCTCTGCATTCTGGGTACAGGGATTTAAGATGAGT  299

seq1  GTCACCATGCCTGGCAAATAACAATTAAAAACCTAAATCAGGTCTATCCA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATGCCTGGCAAATAACAATTAAAAACCTAAATCAGGTCTATCCA  349

seq1  TCAATGCACATTTGAGGAACATTTCTTCTCATCCTTTATATGAGGCCACA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCACATTTGAGGAACATTTCTTCTCATCCTTTATATGAGGCCACA  399

seq1  AAACGTTTGAGCCTTATGAATAAACATTTGCTTTCCTTCTTACTCCTTAG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTTGAGCCTTATGAATAAACATTTGCTTTCCTTCTTACTCCTTAG  449

seq1  GGACACAGAAGAGCAGAAAGCGGCCTCAGTGCCAAGAAGTGTATTATGTA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGAAGAGCAGAAAGCGGCCTCAGTGCCAAGAAGTGTATTATGTA  499

seq1  ATCCGGGAGAGACTAGGACAGGGGATTTTTCCCCCTGCCTCGGCCAAGAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGGAGAGACTAGGACAGGGGATTTTTCCCCCTGCCTCGGCCAAGAG  549

seq1  CCAGAGAACAGTTGCACACAGAAGTTAAAGAAAATTAGATCAATGAGTAG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACAGTTGCACACAGAAGTTAAAGAAAATTAGATCAATGAGTAG  599

seq1  ACTGTCTTTGACATTTACCTAGGAACCCCCAGCGCTAGCCTGGGAAGAGG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTTGACATTTACCTAGGAACCCCCAGCGCTAGCCTGGGAAGAGG  649

seq1  CCAGGTAAGCATCCAGGAAAGAGAAGTAAAAAGAACAGCAGAGTTTGGTT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAGCATCCAGGAAAGAGAAGTAAAAAGAACAGCAGAGTTTGGTT  699

seq1  GAGACAGCTCATTGTCTGTAGAAAGTGAGGCTAGCCAGATGGGGGCGAGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCTCATTGTCTGTAGAAAGTGAGGCTAGCCAGATGGGGGCGAGA  749

seq1  GGCTCCAGGCCAAGGAGTGCATGGACTGGGCACCAAAGCTAAGTCATTCT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGGCCAAGGAGTGCATGGACTGGGCACCAAAGCTAAGTCATTCT  799

seq1  CATTAGACAGGCTGTGGGATGGCTATCTCGTCTACCAGTACTGCACAAAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACAGGCTGTGGGATGGCTATCTCGTCTACCAGTACTGCACAAAT  849

seq1  CCAGAAATACCACTTATAAAGGGCTCCTCCTGTGCTTCCCCATAGGAATG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATACCACTTATAAAGGGCTCCTCCTGTGCTTCCCCATAGGAATG  899

seq1  TCACAGTGGTAAATCTAGACAACCTTGTCTATTTTATGCAAAATTCTATT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGGTAAATCTAGACAACCTTGTCTATTTTATGCAAAATTCTATT  949

seq1  TTGGGGACAGTTTTGCTTTATAACCTCAGCTGGGTCCTCCTTCCTCTCAG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACAGTTTTGCTTTATAACCTCAGCTGGGTCCTCCTTCCTCTCAG  999

seq1  CCCTCTGGGTCTCAGACTCTAGGCGCACACTTCCAGCCTAACTGAAAGCT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGGTCTCAGACTCTAGGCGCACACTTCCAGCCTAACTGAAAGCT  1049

seq1  ACTTTCTCAAAAAACAACCTAGAAGCCAGGTGTGGGTATGCAAAAGAAAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCAAAAAACAACCTAGAAGCCAGGTGTGGGTATGCAAAAGAAAA  1099

seq1  AAAAAAAAAAGGCTGGAATTC  1104
      |||||||||||||||||||||
seq2  AAAAAAAAAAGGCTGGAATTC  1120