BAC Information

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BAC

Clone NameB6Ng01-304B24
Chromosome6 (Build37)6 (Build37)
Map Location 90,077,857 - 90,078,64385,609,369 - 85,609,727
singlet/doubletsingletsinglet
Overlap geneV1ra1
Upstream geneGm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1
Downstream geneLOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304B24.bB6Ng01-304B24.g
ACCGA097757GA097758
length1,037954
definitionB6Ng01-304B24.b B6Ng01-304B24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,077,857 - 90,078,643)(85,609,369 - 85,609,727)
sequence
gaattcctttgtagaccgagctggcctccatttcataaagccgcctgcct
ctgcctcctcagtgctggaaggaaaggcttgtggcaccacaccccggctc
ctttccctttttctgctgtgtccctcctgggccatgtgaacgtgctggag
ggactcttctggctggcctttttcttttgctcccttggcctctgcgtctg
ccttatattgaaatttccattacccgggggagagatttattagcggtaat
atgcactgacaactttcctacccaacattggtttagtaatgctgttttac
tccacctgtgtgtaatcaagaatctgtaataattttatagtatatatagc
acactaatgaatattgacttgtagttggcatatcaggaagctgaaaaagt
atcatctttcaattatggaaagagggaaaacagaatcctttataaaatgc
ctttctagactgagttgaaccactttgttttaattctgtaataagggata
accccaatacttttaattgtacttcaatttcccctgatgtctatactgaa
agaggacatggagtaaacttctgcagacatttgcctactttgctattctc
atgcaggcacttctagactatgactactatcatgaaagatgcacttacag
agcattgctcatagactgaattgtccacctgagttctctggaaaggattc
cactcgagtgttctgtattggaaatcatctatcttttatcttctatttca
agcatggatggagggtgaccagtaactatgtatggccttgtctcttcgag
agcacaatctatgttcgctctgctagagaagaaccatcaagtgaaatatc
tgcagaggactatctttgtactggaacactaccgtgttcggtgtgaaaag
agcatgctctcgaataccaaagtgtccacctgatagaagtccatggctaa
gcataaggttcaggagagctgacctggaagctgcagctcaaaatcattcg
agggatcatttctctgcttaaaatggcagaattggct
gaattccacacccctaaagacataaatgttgggatgccctggtgtgtgag
ctagccaaatcgtggagtctgaagtgggaaggaggagacagaagaaacca
tgctcatgattacctgtgacttctcaagaatgacgagcccgtaccccagt
ttcttaggctgcttgctgtggccacggtggcagagggtgttgagatgaat
agagggactgggagatgggccaactgtgtgcgagcttgcccagcttcctt
gctggaagtttctgggaaacgaggctgataagatgctactaaatgggaat
ggggtagggatgggtttgagtgaacggggaagcacccagagttttatgct
tctgtgccctagcttgaaacatcgatggtttttcacatatgcaagaccag
gggatctgcatactctgttagacatggctaaagtcgctgataccattatg
ttcctccagaccatttgcttggaaaattgttttccagcctttcattctga
ggtagtgtctatctttttctctgagatgagtttcctgtaagcagcaaaat
gttgggtcttgtttgtgtagccagtttgttagtctatgtcttatgagttt
tcctcttagaaatgctttcattgtgtcccataagtttgggcgtgttgtgg
cttcattttcattaaactccaaaaagtccttaatttctttctttcttcct
tccttgaccaagttatcattgagaagagtgttgttcattttccacgtgaa
tgttggctttctattatttattttgttattgaagatcagccttagtccat
ggtgatctgataggatccatgggactatttcaatattttttgtatatgtt
gaagcttgttttgtgaccagtatgtggtcaagttttggagaagtaccatg
ggggtgctgagaagaaggtatattccttttgtttaggataaatgttctgt
atga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_90077857_90078643
seq2: B6Ng01-304B24.b_279_1079

seq1  TTATTAGCAGTAATATGCAATAAAGACTTTCCTACCCAACATTGGTTTAG  50
      |||||||| |||||||||| | |  |||||||||||||||||||||||||
seq2  TTATTAGCGGTAATATGCACTGACAACTTTCCTACCCAACATTGGTTTAG  50

seq1  TAATGCTGTTTTACTAAGTCAATGTGTAATCAAGAATCTGTAATAATTTT  100
      |||||||||||||||    |  ||||||||||||||||||||||||||||
seq2  TAATGCTGTTTTACTCCACCTGTGTGTAATCAAGAATCTGTAATAATTTT  100

seq1  ATAGTATATATAGCACACTAATGAATATAAGCTTGTAGTTGGCATATCAG  150
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  ATAGTATATATAGCACACTAATGAATATTGACTTGTAGTTGGCATATCAG  150

seq1  GAAGCTGAAAAAGTATCAACTTTCAATTATGGAAAGAGGGAAAACAGAAT  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAGCTGAAAAAGTATCATCTTTCAATTATGGAAAGAGGGAAAACAGAAT  200

seq1  CCTTTAGAACATGCCTTTCTAGACTGAGTTGAACCACTTTGTTTTAATTC  250
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATAAAATGCCTTTCTAGACTGAGTTGAACCACTTTGTTTTAATTC  250

seq1  TGTAATAAGGGATAACCCCAATACTTTTAATTGTAGTTCAATTTCCCCTG  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTAATAAGGGATAACCCCAATACTTTTAATTGTACTTCAATTTCCCCTG  300

seq1  ATGTATATACTGAAAGAGGACATGGAGTAAGCTTCTGCAGACATTTGCCT  350
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTCTATACTGAAAGAGGACATGGAGTAAACTTCTGCAGACATTTGCCT  350

seq1  ACTTTGCTATTCTCTTGCAGGCAGTTCTAGAATATGACTAAAATCATGAA  400
      |||||||||||||| |||||||| ||||||| ||||||||  ||||||||
seq2  ACTTTGCTATTCTCATGCAGGCACTTCTAGACTATGACTACTATCATGAA  400

seq1  AGACGCACTTACAGAGCATTGCTCAAAGACTGAATTGTCCACCTGAGTTC  450
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGATGCACTTACAGAGCATTGCTCATAGACTGAATTGTCCACCTGAGTTC  450

seq1  TCTGGAAAGGATTCCACTCCAGTGTTCTGTTTTGGAATTCATTTATCTTT  500
      ||||||||||||||||||| |||||||||| |||||| |||| |||||||
seq2  TCTGGAAAGGATTCCACTCGAGTGTTCTGTATTGGAAATCATCTATCTTT  500

seq1  TATCTTCTATTTCAAGCATGGATGGA-GGTGACCAGTAACTATGTATGGC  549
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATCTTCTATTTCAAGCATGGATGGAGGGTGACCAGTAACTATGTATGGC  550

seq1  CTTATCTCTTCTAGAGCACAAAC-ATG-AGGCACTGC-ATGGGAGAACCA  596
      ||| ||||||| ||||||||| | |||   || |||| |  | |||||||
seq2  CTTGTCTCTTCGAGAGCACAATCTATGTTCGCTCTGCTAGAGAAGAACCA  600

seq1  GCAGGTGAAATATCTGCAGA-GACCATC-TTGTACTGGAACACTGCCATG  644
       || |||||||||||||||| ||| ||| ||||||||||||||| || ||
seq2  TCAAGTGAAATATCTGCAGAGGACTATCTTTGTACTGGAACACTACCGTG  650

seq1  TTCGGTGTGTAAAGAGCATGCTCTTGAATACC-TAGTGTCCACCTGATAC  693
      ||||||||| |||||||||||||| |||||||  ||||||||||||||| 
seq2  TTCGGTGTGAAAAGAGCATGCTCTCGAATACCAAAGTGTCCACCTGATAG  700

seq1  AAGCACATGGCTGTGTAT-ATGTTCAGGAGGAGCTGA-CTGG-AGCT-CA  739
      |||  |||||||  | || | |||||||| ||||||| |||| |||| ||
seq2  AAGTCCATGGCTAAGCATAAGGTTCAGGA-GAGCTGACCTGGAAGCTGCA  749

seq1  GCCTCAGAGT-ATTC--TGGGTCA-TACT-TGGTTAAAATGGCAGATTTG  784
      | |||| | | ||||   || ||| | || || ||||||||||||| |||
seq2  G-CTCAAAATCATTCGAGGGATCATTTCTCTGCTTAAAATGGCAGAATTG  798

seq1  GGT  787
      | |
seq2  GCT  801

seq1: chr6_85609369_85609727
seq2: B6Ng01-304B24.g_657_1016 (reverse)

seq1  TACAGAACATTTTATCCTAAAACAAAGG-ATATACCTTCTTCTCAGCA-C  48
      ||||||||| |||||||||||  ||||| ||||||||||||||||||| |
seq2  TACAGAACA-TTTATCCTAAACAAAAGGAATATACCTTCTTCTCAGCACC  49

seq1  CTCATGGTACCTTCTCTAAAA-TTGACCACATAATTGGTCACAAAACAAG  97
      | ||||||| |||||| |||| |||||||||| | |||||||||||||||
seq2  CCCATGGTA-CTTCTCCAAAACTTGACCACAT-ACTGGTCACAAAACAAG  97

seq1  CCTCAACATATAC-AAAAATATTGAAATTGTCCCATGCATCCTATCAGAT  146
      | ||||||||||| |||||||||||||| |||||||| ||||||||||||
seq2  CTTCAACATATACAAAAAATATTGAAATAGTCCCATGGATCCTATCAGAT  147

seq1  CACCATGGACTAAGGCTGATCTTCAATAACAAAATAAATAATAGAAAGCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGACTAAGGCTGATCTTCAATAACAAAATAAATAATAGAAAGCC  197

seq1  AACATTCATGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCA  246
      |||||||| ||||||| |||||||||||||||||||||||| ||||||||
seq2  AACATTCACGTGGAAAATGAACAACACTCTTCTCAATGATAACTTGGTCA  247

seq1  AGGAAGGAATAAAGAAAGAAATTAAGGACTTTTTGGAGTTTAATGAAAAT  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGAAAGAAAGAAATTAAGGACTTTTTGGAGTTTAATGAAAAT  297

seq1  GAAGCCACAACATACCCAAACTTATGGGACACAATGAAAGCATTCCTAAG  346
      ||||||||||||  |||||||||||||||||||||||||||||| |||||
seq2  GAAGCCACAACACGCCCAAACTTATGGGACACAATGAAAGCATTTCTAAG  347

seq1  AGGAAAACTCATA  359
      |||||||||||||
seq2  AGGAAAACTCATA  360