BAC Information

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BAC

Clone NameB6Ng01-304J15
Chromosome6 (Build37)
Map Location 119,413,869 - 119,568,407
singlet/doubletdoublet
Overlap geneWnt5b, Fbxl14, Erc1
Upstream geneZfp9, Ankrd26, Cacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304J15.bB6Ng01-304J15.g
ACCGA098118GA098119
length876735
definitionB6Ng01-304J15.b B6Ng01-304J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,413,869 - 119,414,738)(119,567,673 - 119,568,407)
sequence
gaattctttccaatccacgagcaaagaggtttatcttctaagatcgtttc
cagtttctttcttccatgctttaaagttaccatcatacaggtctttcccg
tccttggtttagttttacttcaaggctcaaggttttggtttcttttcttt
ttctttttctattgtgagtggggctgtttcctgacttctttctcagcatg
tttgttactaggatataggaaggctgctgagttctgtgtagcaattttgt
atcccgccactttgctgaaagtgtttatcagctctaagagttttcttctg
aaacaaagaaagaaccattttcttatggagtctttatggtccctatgcac
agaatcatattatctgcaaataaagatactttgacttcttcctttcctac
taaacaatgcttttactgaaacagaaattaacattaaaacgtagactctt
aaacacaaggcttgctgtacccacaaacacaactcagacaatcatccgac
catcagcaaaccaacccagcacactgctgcagaggagtagattccaggag
tgtcactgatgtgcctgcaaagtgtctggggttggggtgtggctgggtgg
tagagcaggtatgcactggacacgtcccaggccccgggttccatcttcac
tacaagttctcccctaaacctataactttgttattgttgttttgattccc
atattttagataatttgctctcattagggaatttgcagggtgggtagtca
actaaaaaaatacaagggaaaagttttaatgcttaagaaaatgttcaagt
tttagcctactccagcacataccttcatcgctcacttttcagaaaccgga
gcagtgtagtctaaccaaccacgtgt
gaattctgagggccagtccctaggatctacctggggctttgacattagtt
ttaaaatatcaatttaaaaaaagttggaacaagggagtaaagatggaggg
tatgttttaaatttcttttcttccactgctgccgtgttcaacagctgcca
ggacactgtctagattctcctttacaggccatttggctggaaaacacagt
gcagctgtggctgtgtcttcctttgatctgatgcccttgaggtttgtcta
aggaaatcagtttcttggaaagtgataattgtgactactaagctcacacg
tactggtccttgcatccgctggacacactgcccatgcttttgttgacctc
actcctttggagtctgctctccctgaaatgtctgtgtcttgatgttaaac
tgatttaaaaatgcaaacatatcaacctctgaatattgaacacagccaaa
aaggataaaaggtaagtttttcagtggccagggttctgtgtgacttttag
cagcaggtgggaaatgtacagtagcaaccagaaagcatgctgcacatcag
aaaaagctaaaaatcaaaggacatctgtgtcctggttgttcttttgcaca
ctgcaggggcatgtatttgttaccatgaggcacgtaggggccacacagta
gctatagtttagcagtcatttgtaaatgaatgattctgcctcttctccgg
tgttttgggttttattttgtttttggttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119413869_119414738
seq2: B6Ng01-304J15.b_47_922

seq1  GAATTCTTTCCAATCCACGAGCAAAGAGGTTTATCTTCTAAGATCGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAATCCACGAGCAAAGAGGTTTATCTTCTAAGATCGTTTC  50

seq1  CAGTTTCTTTCTTCCATGCTTTAAAGTTACCATCATACAGGTCTTTCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTTCTTCCATGCTTTAAAGTTACCATCATACAGGTCTTTCCCG  100

seq1  TCCTTGGTTTAGTTTTACTTCAAGGCTCAAGGTTTTGGTTTCTTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTTTAGTTTTACTTCAAGGCTCAAGGTTTTGGTTTCTTTTCTTT  150

seq1  TTCTTTTTCTATTGTGAGTGGGGCTGTTTCCTGACTTCTTTCTCAGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTATTGTGAGTGGGGCTGTTTCCTGACTTCTTTCTCAGCATG  200

seq1  TTTGTTACTAGGATATAGGAAGGCTGCTGAGTTCTGTGTAGCAATTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACTAGGATATAGGAAGGCTGCTGAGTTCTGTGTAGCAATTTTGT  250

seq1  ATCCCGCCACTTTGCTGAAAGTGTTTATCAGCTCTAAGAGTTTTCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGCCACTTTGCTGAAAGTGTTTATCAGCTCTAAGAGTTTTCTTCTG  300

seq1  AAACAAAGAAAGAACCATTTTCTTATGGAGTCTTTATGGTCCCTATGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAAGAACCATTTTCTTATGGAGTCTTTATGGTCCCTATGCAC  350

seq1  AGAATCATATTATCTGCAAATAAAGATACTTTGACTTCTTCCTTTCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATATTATCTGCAAATAAAGATACTTTGACTTCTTCCTTTCCTAC  400

seq1  TAAACAATGCTTTTACTGAAACAGAAATTAACATTAAAACGTAGACTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATGCTTTTACTGAAACAGAAATTAACATTAAAACGTAGACTCTT  450

seq1  AAACACAAGGCTTGCTGTACCCACAAACACAACTCAGACAATCATCCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGGCTTGCTGTACCCACAAACACAACTCAGACAATCATCCGAC  500

seq1  CATCAGCAAACCAACCCAGCACACTGCTGCAGAGGAGTAGATTCCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCAAACCAACCCAGCACACTGCTGCAGAGGAGTAGATTCCAGGAG  550

seq1  TGTCACTGATGTGCCTGCAAAGTGTCTGGGGTTGGGGTGTGGCTGGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGATGTGCCTGCAAAGTGTCTGGGGTTGGGGTGTGGCTGGGTGG  600

seq1  TAGAGCAGGTATGCACTGGACACGTCCCAGGCCCCGGGTTCCATCTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGGTATGCACTGGACACGTCCCAGGCCCCGGGTTCCATCTTCAC  650

seq1  TACAAGTTCTCCCCTAAACCTATAAC-TTGTTATTGTTGTTTTGATTCCC  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TACAAGTTCTCCCCTAAACCTATAACTTTGTTATTGTTGTTTTGATTCCC  700

seq1  ATA-TTTAGATAATTTGCTCTCATTAGGGAATTTGCAGGGTGGGTAGTCA  748
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGATAATTTGCTCTCATTAGGGAATTTGCAGGGTGGGTAGTCA  750

seq1  ACTAAAAAAATACAGGGGAAAAGTTTTAATGCTTAAGAAAATGTTCAAGT  798
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAAATACAAGGGAAAAGTTTTAATGCTTAAGAAAATGTTCAAGT  800

seq1  TTTAGCCTACTCCAGCACATA-CTTCATCGCTCAC-TTTCAGAAA-CGGA  845
      ||||||||||||||||||||| ||||||||||||| ||||||||| ||||
seq2  TTTAGCCTACTCCAGCACATACCTTCATCGCTCACTTTTCAGAAACCGGA  850

seq1  GCAGTGTAGTCTAACC-ACCACGTGT  870
      |||||||||||||||| |||||||||
seq2  GCAGTGTAGTCTAACCAACCACGTGT  876

seq1: chr6_119567673_119568407
seq2: B6Ng01-304J15.g_67_801 (reverse)

seq1  AAAAAAAAACCAAAAACAAAATAAAACCCAAAACACCGGAGAAGAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACCAAAAACAAAATAAAACCCAAAACACCGGAGAAGAGGCAG  50

seq1  AATCATTCATTTACAAATGACTGCTAAACTATAGCTACTGTGTGGCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCATTTACAAATGACTGCTAAACTATAGCTACTGTGTGGCCCCT  100

seq1  ACGTGCCTCATGGTAACAAATACATGCCCCTGCAGTGTGCAAAAGAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCTCATGGTAACAAATACATGCCCCTGCAGTGTGCAAAAGAACAA  150

seq1  CCAGGACACAGATGTCCTTTGATTTTTAGCTTTTTCTGATGTGCAGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACACAGATGTCCTTTGATTTTTAGCTTTTTCTGATGTGCAGCATG  200

seq1  CTTTCTGGTTGCTACTGTACATTTCCCACCTGCTGCTAAAAGTCACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGTTGCTACTGTACATTTCCCACCTGCTGCTAAAAGTCACACAG  250

seq1  AACCCTGGCCACTGAAAAACTTACCTTTTATCCTTTTTGGCTGTGTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGCCACTGAAAAACTTACCTTTTATCCTTTTTGGCTGTGTTCAA  300

seq1  TATTCAGAGGTTGATATGTTTGCATTTTTAAATCAGTTTAACATCAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAGGTTGATATGTTTGCATTTTTAAATCAGTTTAACATCAAGAC  350

seq1  ACAGACATTTCAGGGAGAGCAGACTCCAAAGGAGTGAGGTCAACAAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTTCAGGGAGAGCAGACTCCAAAGGAGTGAGGTCAACAAAAGC  400

seq1  ATGGGCAGTGTGTCCAGCGGATGCAAGGACCAGTACGTGTGAGCTTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGTGTGTCCAGCGGATGCAAGGACCAGTACGTGTGAGCTTAGTA  450

seq1  GTCACAATTATCACTTTCCAAGAAACTGATTTCCTTAGACAAACCTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAATTATCACTTTCCAAGAAACTGATTTCCTTAGACAAACCTCAAG  500

seq1  GGCATCAGATCAAAGGAAGACACAGCCACAGCTGCACTGTGTTTTCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGATCAAAGGAAGACACAGCCACAGCTGCACTGTGTTTTCCAGC  550

seq1  CAAATGGCCTGTAAAGGAGAATCTAGACAGTGTCCTGGCAGCTGTTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCCTGTAAAGGAGAATCTAGACAGTGTCCTGGCAGCTGTTGAAC  600

seq1  ACGGCAGCAGTGGAAGAAAAGAAATTTAAAACATACCCTCCATCTTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGCAGTGGAAGAAAAGAAATTTAAAACATACCCTCCATCTTTACT  650

seq1  CCCTTGTTCCAACTTTTTTTAAATTGATATTTTAAAACTAATGTCAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTTCCAACTTTTTTTAAATTGATATTTTAAAACTAATGTCAAAGC  700

seq1  CCCAGGTAGATCCTAGGGACTGGCCCTCAGAATTC  735
      |||||||||||||||||||||||||||||||||||
seq2  CCCAGGTAGATCCTAGGGACTGGCCCTCAGAATTC  735