BAC Information

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BAC

Clone NameB6Ng01-305D01
Chromosome6 (Build37)
Map Location 98,805,616 - 98,944,383
singlet/doubletdoublet
Overlap geneLOC665979, Foxp1
Upstream geneLOC100043692, Mitf, Gm765, LOC666019, LOC665963
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305D01.bB6Ng01-305D01.g
ACCGA098543GA098544
length7631,100
definitionB6Ng01-305D01.b B6Ng01-305D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,943,621 - 98,944,383)(98,805,616 - 98,806,723)
sequence
gaattctcctaactgcaattttcctttttgtgtgtactcagaaataacat
ccttatgggctgctcagtgccacggcgcagacagagcacaattgccacag
cccaggtggcgttaatatgggacaatcccccgggcacatgtcgccaagag
ttgtacagcttgttcagtgtcttcatccatatggcaatctgtcccattca
cagaaaggcatcagggctgtgccgggtggggaccgtggtcaatgtagtgt
gaagagtcaggctctgttcatgcctcctccctcgtctggaatatttaatt
gtagaccagcaagcactcatctctctctctctctctctctctctctctct
ctctctcacacacacacacacacacacacacacccttgttaacctattat
tcagtatcaggagcacactgttaagtgagcaggcaacattctagtgtaca
aaactcccgtgatgactaggaaatcagctaacatcccacacagagacctt
tctaggctcttgttcaggagtaacttagcataagtactacatgcttgtac
taaaattcttccagaaaccgaaatgatttttttgttctctgtggtttttc
ttccttacaaattgtaaatgcttttattgtccaatttgaactgttgagct
aaataattttggcttctaagtcttaaaattaaaagaaaagaaaagaaaag
aaagaaagagaaaagtggagtgtgtgtgtgagagagagagagatagagag
agagagagagaac
gaattcaaaggtcggatttggaagtaaggttacaaattccaggagttggg
agttgcagaggaggaaggatgaagctttatgagaaaatagaaaatatttg
tggtgttggaactgttggagatcttgactgtggctttagattgattaatg
caaatagctagtaacatataaatttgacacgctgtctacgccacatacaa
aggaggacacatgcaagtgcggcagtctgggcaggaacagtggatctcag
catggttgctatcgaagttgcagtattttatctaaactctatctatttgg
aaagactgtgccaaatgcactatggatctctcagagggagttcttaaaac
cacaggggagggctagggagatcaccccatctgtgaaatgctggccttac
actcagaagctgggcatggtggtgtggactccttaatcccagcactgggg
agtggagacagatgaattcatgaggttctctgaccagccaccctagcctg
ttttgcacattccaggtcagcaaaagcgctttctcaggaaaggaaatggc
agctgaggaatgacagctgaggttgtcctctgacctgcaaaaacacacac
ttacttacaccaacacactcacatgtacacacacacacacacacacacac
acacacacacacactgtagtgatctaaaaataaaagatgatttaaaatta
ataacaatatctcatttaactggggattgaggaactgaaaaagaagataa
ttaatggatctttggtaaagaaaggaacaattataaacgtcttcacaaag
gtcactgtgactatgttatgtatcagagatttaatcactgtgtggcacta
tgtgttctaggaattgccaaacatgcaaaaaagagccatcgttccttcca
taagaacactaaccctccttccatttgtatgtgcagggacaactgagcct
ttcccttcccttcttattctgagaagaaatattaaaaaaatgttaacgtt
gaatttctgcttaaaattttaactgatccgtgctctggctatggggagga
tgattttctgtgtaaattgatcttgtgagttctcgtcctgggaggtacat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98943621_98944383
seq2: B6Ng01-305D01.b_42_804 (reverse)

seq1  GTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACTCCACT  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCACACACACACTCCACT  50

seq1  TTTCTCTTTCTTTCTTTTCTTTTCTTTTCTTTTAATTTTAAGACTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCTTTCTTTTCTTTTCTTTTCTTTTAATTTTAAGACTTAGAA  100

seq1  GCCAAAATTATTTAGCTCAACAGTTCAAATTGGACAATAAAAGCATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATTATTTAGCTCAACAGTTCAAATTGGACAATAAAAGCATTTAC  150

seq1  AATTTGTAAGGAAGAAAAACCACAGAGAACAAAAAAATCATTTCGGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAAGGAAGAAAAACCACAGAGAACAAAAAAATCATTTCGGTTTC  200

seq1  TGGAAGAATTTTAGTACAAGCATGTAGTACTTATGCTAAGTTACTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAATTTTAGTACAAGCATGTAGTACTTATGCTAAGTTACTCCTGA  250

seq1  ACAAGAGCCTAGAAAGGTCTCTGTGTGGGATGTTAGCTGATTTCCTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCCTAGAAAGGTCTCTGTGTGGGATGTTAGCTGATTTCCTAGTC  300

seq1  ATCACGGGAGTTTTGTACACTAGAATGTTGCCTGCTCACTTAACAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGGGAGTTTTGTACACTAGAATGTTGCCTGCTCACTTAACAGTGTG  350

seq1  CTCCTGATACTGAATAATAGGTTAACAAGGGTGTGTGTGTGTGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATACTGAATAATAGGTTAACAAGGGTGTGTGTGTGTGTGTGTGT  400

seq1  GTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAGTG  450

seq1  CTTGCTGGTCTACAATTAAATATTCCAGACGAGGGAGGAGGCATGAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGTCTACAATTAAATATTCCAGACGAGGGAGGAGGCATGAACAG  500

seq1  AGCCTGACTCTTCACACTACATTGACCACGGTCCCCACCCGGCACAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACTCTTCACACTACATTGACCACGGTCCCCACCCGGCACAGCCC  550

seq1  TGATGCCTTTCTGTGAATGGGACAGATTGCCATATGGATGAAGACACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTTTCTGTGAATGGGACAGATTGCCATATGGATGAAGACACTGA  600

seq1  ACAAGCTGTACAACTCTTGGCGACATGTGCCCGGGGGATTGTCCCATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGTACAACTCTTGGCGACATGTGCCCGGGGGATTGTCCCATATT  650

seq1  AACGCCACCTGGGCTGTGGCAATTGTGCTCTGTCTGCGCCGTGGCACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCACCTGGGCTGTGGCAATTGTGCTCTGTCTGCGCCGTGGCACTGA  700

seq1  GCAGCCCATAAGGATGTTATTTCTGAGTACACACAAAAAGGAAAATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCATAAGGATGTTATTTCTGAGTACACACAAAAAGGAAAATTGCA  750

seq1  GTTAGGAGAATTC  763
      |||||||||||||
seq2  GTTAGGAGAATTC  763

seq1: chr6_98805616_98806723
seq2: B6Ng01-305D01.g_68_1167

seq1  GAATTCAAAGGTCGGATTTGGAAGTAAGGTTACAAATTCCAGGAGTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGTCGGATTTGGAAGTAAGGTTACAAATTCCAGGAGTTGGG  50

seq1  AGTTGCAGAGGAGGAAGGATGAAGCTTTATGAGAAAATAGAAAATATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGAGGAGGAAGGATGAAGCTTTATGAGAAAATAGAAAATATTTG  100

seq1  TGGTGTTGGAACTGTTGGAGATCTTGACTGTGGCTTTAGATTGATTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGGAACTGTTGGAGATCTTGACTGTGGCTTTAGATTGATTAATG  150

seq1  CAAATAGCTAGTAACATATAAATTTGACACGCTGTCTACGCCACATACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCTAGTAACATATAAATTTGACACGCTGTCTACGCCACATACAA  200

seq1  AGGAGGACACATGCAAGTGCGGCAGTCTGGGCAGGAACAGTGGATCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACACATGCAAGTGCGGCAGTCTGGGCAGGAACAGTGGATCTCAG  250

seq1  CATGGTTGCTATCGAAGTTGCAGTATTTTATCTAAACTCTATCTATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGCTATCGAAGTTGCAGTATTTTATCTAAACTCTATCTATTTGG  300

seq1  AAAGACTGTGCCAAATGCACTATGGATCTCTCAGAGGGAGTTCTTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTGCCAAATGCACTATGGATCTCTCAGAGGGAGTTCTTAAAAC  350

seq1  CACAGGGGAGGGCTAGGGAGATCACCCCATCTGTGAAATGCTGGCCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGGAGGGCTAGGGAGATCACCCCATCTGTGAAATGCTGGCCTTAC  400

seq1  ACTCAGAAGCTGGGCATGGTGGTGTGGACTCCTTAATCCCAGCACTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAGCTGGGCATGGTGGTGTGGACTCCTTAATCCCAGCACTGGGG  450

seq1  AGTGGAGACAGATGAATTCATGAGGTTCTCTGACCAGCCACCCTAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGACAGATGAATTCATGAGGTTCTCTGACCAGCCACCCTAGCCTG  500

seq1  TTTTGCACATTCCAGGTCAGCAAAAGCGCTTTCTCAGGAAAGGAAATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCACATTCCAGGTCAGCAAAAGCGCTTTCTCAGGAAAGGAAATGGC  550

seq1  AGCTGAGGAATGACAGCTGAGGTTGTCCTCTGACCTGCAAAAACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGAATGACAGCTGAGGTTGTCCTCTGACCTGCAAAAACACACAC  600

seq1  TTACTTACACCAACACACTCACATGTACACACACACACACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACACCAACACACTCACATGTACACACACACACACACACACACAC  650

seq1  ACACACACACACACTGTAGTGATCTAAAAATAAAAGATGATTTAAAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACTGTAGTGATCTAAAAATAAAAGATGATTTAAAATTA  700

seq1  ATAACAATATCTCATTTAACTGGGGATTGAGGAACTGAAAAAGAAGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATATCTCATTTAACTGGGGATTGAGGAACTGAAAAAGAAGATAA  750

seq1  TTAATGGATCTTTGGTAAAGAAAGGAACAATTATAAACGTCTTCACAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGATCTTTGGTAAAGAAAGGAACAATTATAAACGTCTTCACAAAG  800

seq1  GTCACTGTGACTATGTTATGTATCAGAGATTTAATCACTGTGTGGCACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGACTATGTTATGTATCAGAGATTTAATCACTGTGTGGCACTA  850

seq1  TGTGTTCTAGGAATTGCCAAACATGCAAAAAAGAGCCATCGTTCCTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTAGGAATTGCCAAACATGCAAAAAAGAGCCATCGTTCCTTCCA  900

seq1  TAAGAACACTAACCTTCCTTCCATTTGTATGTGCAGGGACAAACTGAGCC  950
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  TAAGAACACTAACCCTCCTTCCATTTGTATGTGCAGGGAC-AACTGAGCC  949

seq1  TTTCCCTT-CCTTCTTATTCTGAGAAGAAATATT-AAAAAATGTTAACGT  998
      |||||||| ||||||||||||||||||||||||| |||||||||||||| 
seq2  TTTCCCTTCCCTTCTTATTCTGAGAAGAAATATTAAAAAAATGTTAACG-  998

seq1  TTGAATTTCTGCCTAAAATTTTAACTGATCCGTGGCTCTGGCTATTGGGG  1048
      |||||||||||| |||||||||||||||||||| |||||||||| |||||
seq2  TTGAATTTCTGCTTAAAATTTTAACTGATCCGT-GCTCTGGCTA-TGGGG  1046

seq1  AGGGATGATTTTTCTGTGGTAAAATTGATCTTGTGAGTTTCTCGTCACTG  1098
      | |||||| |||||||||   |||||||||||||||| |||||||| |||
seq2  A-GGATGA-TTTTCTGTG--TAAATTGATCTTGTGAG-TTCTCGTC-CTG  1090

seq1  GGAGGTACAT  1108
      ||||||||||
seq2  GGAGGTACAT  1100